Wall clock time and date at job start Tue Mar 31 2020 02:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47233 * 2 1 4 4 N 1.33319 * 126.10747 * 270.12615 * 3 2 1 5 5 C 1.30854 * 109.68817 * 180.27453 * 4 3 2 6 6 N 1.34499 * 109.16052 * 359.75709 * 5 4 3 7 7 H 0.97006 * 126.46871 * 180.02562 * 6 5 4 8 8 C 1.36658 * 126.10907 * 89.99872 * 3 2 1 9 9 C 1.46770 * 126.84537 * 359.97438 * 8 3 2 10 10 O 1.21681 * 119.99813 * 359.71667 * 9 8 3 11 11 N 1.34772 * 119.99962 * 179.70937 * 9 8 3 12 12 C 1.46504 * 119.99676 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.46991 * 184.66328 * 12 11 9 14 14 H 1.08997 * 110.00037 * 54.40463 * 13 12 11 15 15 C 1.54328 * 109.88253 * 293.30821 * 13 12 11 16 16 C 1.55271 * 103.00829 * 218.46742 * 15 13 12 17 17 C 1.54911 * 101.52965 * 35.36431 * 16 15 13 18 18 N 1.47023 * 109.88399 * 175.50576 * 13 12 11 19 19 C 1.36945 * 125.64364 * 298.33764 * 18 13 12 20 20 H 1.07999 * 119.99844 * 346.28822 * 19 18 13 21 21 C 1.38811 * 119.99530 * 166.29381 * 19 18 13 22 22 N 1.31613 * 120.00483 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99613 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47237 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47267 * 119.99835 * 23 21 19 26 26 H 1.48494 * 109.47391 * 240.00014 * 23 21 19 27 27 H 1.08999 * 109.47214 * 60.00403 * 1 2 3 28 28 H 1.09003 * 109.47222 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47404 * 300.00198 * 1 2 3 30 30 H 1.09004 * 109.47133 * 239.99754 * 2 1 3 31 31 H 1.09002 * 109.47198 * 120.00125 * 2 1 3 32 32 H 1.08003 * 125.42323 * 179.78365 * 5 4 3 33 33 H 0.96996 * 120.00164 * 0.02562 * 11 9 8 34 34 H 1.09000 * 109.47103 * 64.66430 * 12 11 9 35 35 H 1.08998 * 109.47218 * 304.66198 * 12 11 9 36 36 H 1.08999 * 110.71908 * 336.76021 * 15 13 12 37 37 H 1.09000 * 110.71633 * 100.02768 * 15 13 12 38 38 H 1.09002 * 110.96391 * 277.33660 * 16 15 13 39 39 H 1.09005 * 111.09857 * 153.45022 * 16 15 13 40 40 H 1.08998 * 110.36709 * 204.23305 * 17 16 15 41 41 H 1.09001 * 110.36536 * 82.01625 * 17 16 15 42 42 H 0.97000 * 120.00236 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2920 2.1623 -1.0771 5 6 2.7168 3.3434 -0.7072 6 7 2.7397 3.4035 0.6362 7 1 3.0127 4.1627 1.1748 8 6 2.3008 2.1801 1.1041 9 6 2.1569 1.7746 2.5073 10 8 1.7562 0.6585 2.7800 11 7 2.4686 2.6385 3.4937 12 6 2.3254 2.2335 4.8943 13 6 2.6304 3.4256 5.8036 14 1 2.0053 4.2747 5.5272 15 6 4.1203 3.8097 5.6836 16 6 4.5038 4.1818 7.1414 17 6 3.6519 3.1739 7.9526 18 7 2.3856 3.0601 7.2064 19 6 1.1806 2.6776 7.7328 20 1 0.2717 2.8344 7.1710 21 6 1.1275 2.0884 8.9886 22 7 2.2352 1.8970 9.6731 23 14 -0.5162 1.5673 9.7070 24 1 -1.6012 1.8905 8.7460 25 1 -0.5023 0.1050 9.9653 26 1 -0.7519 2.2928 10.9811 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.0029 4.1430 -1.3745 33 1 2.7878 3.5282 3.2762 34 1 3.0218 1.4236 5.1114 35 1 1.3053 1.8929 5.0716 36 1 4.7103 2.9617 5.3358 37 1 4.2456 4.6658 5.0207 38 1 4.2173 5.2084 7.3701 39 1 5.5679 4.0260 7.3192 40 1 3.4674 3.5550 8.9570 41 1 4.1522 2.2066 8.0005 42 1 2.1981 1.4850 10.5505 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028289848.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:36 Heat of formation + Delta-G solvation = 34.111589 kcal Electronic energy + Delta-G solvation = -23490.148699 eV Core-core repulsion = 20085.338768 eV Total energy + Delta-G solvation = -3404.809931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.36330 -39.21566 -37.64905 -34.83113 -33.86501 -32.56080 -32.13158 -29.93019 -29.32477 -28.39841 -25.17146 -24.39745 -23.53706 -22.69507 -21.10431 -20.33143 -19.95540 -19.39005 -18.68585 -16.85548 -16.14819 -15.92995 -15.68095 -15.07100 -14.67693 -14.52667 -14.34886 -13.95099 -13.84947 -13.54732 -13.37453 -13.01073 -12.35629 -12.17491 -11.96285 -11.86731 -11.45472 -11.44260 -11.01205 -10.94428 -10.84868 -10.48100 -10.31317 -10.18274 -10.14011 -9.98890 -9.93148 -9.80406 -9.67805 -8.92787 -8.65762 -8.53293 -6.91282 -5.81856 -3.19028 1.22565 2.71181 2.73060 3.28686 3.37506 3.37947 3.44009 3.45511 4.26753 4.44294 4.72333 4.89423 5.06006 5.24803 5.30001 5.39191 5.48475 5.51978 5.54184 5.57444 5.67134 5.71434 5.94046 6.03152 6.05024 6.12948 6.23277 6.29735 6.36968 6.43735 6.47666 6.52056 6.59481 6.70567 6.94598 7.01390 7.45522 7.53298 7.56950 7.74059 7.79499 8.19305 8.30159 9.11800 9.72242 10.38309 11.29822 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018800 B = 0.003922 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.983713 B = 7136.674456 C = 8265.232647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 C 0.095 3.905 4 N -0.499 5.499 5 C 0.212 3.788 6 N -0.556 5.556 7 H 0.422 0.578 8 C -0.084 4.084 9 C 0.586 3.414 10 O -0.520 6.520 11 N -0.722 5.722 12 C 0.110 3.890 13 C 0.152 3.848 14 H 0.037 0.963 15 C -0.128 4.128 16 C -0.148 4.148 17 C 0.171 3.829 18 N -0.588 5.588 19 C -0.236 4.236 20 H 0.077 0.923 21 C 0.000 4.000 22 N -0.915 5.915 23 Si 0.911 3.089 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.290 1.290 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.214 0.786 33 H 0.388 0.612 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.026 0.974 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.830 5.631 -17.415 18.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.087 4.087 3 C -0.039 4.039 4 N -0.218 5.218 5 C -0.072 4.072 6 N -0.161 5.161 7 H 0.261 0.739 8 C -0.200 4.200 9 C 0.371 3.629 10 O -0.395 6.395 11 N -0.372 5.372 12 C -0.015 4.015 13 C 0.043 3.957 14 H 0.054 0.946 15 C -0.166 4.166 16 C -0.187 4.187 17 C 0.046 3.954 18 N -0.312 5.312 19 C -0.364 4.364 20 H 0.095 0.905 21 C -0.197 4.197 22 N -0.561 5.561 23 Si 0.741 3.259 24 H -0.203 1.203 25 H -0.215 1.215 26 H -0.217 1.217 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.230 0.770 33 H 0.220 0.780 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.044 0.956 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.343 4.423 -17.723 18.570 hybrid contribution -0.324 0.978 1.291 1.652 sum 3.019 5.401 -16.432 17.558 Atomic orbital electron populations 1.21611 0.94407 1.01784 1.01740 1.20055 0.96249 0.88748 1.03644 1.21040 0.99154 0.97055 0.86609 1.70107 1.18430 1.02718 1.30578 1.25097 1.01951 0.98044 0.82084 1.43348 1.50384 1.13554 1.08796 0.73946 1.21160 1.15195 0.88101 0.95521 1.16880 0.78331 0.85243 0.82437 1.90839 1.46137 1.19850 1.82713 1.46063 1.67351 1.16195 1.07610 1.22317 1.02866 0.99624 0.76712 1.21127 0.93801 0.93741 0.87005 0.94579 1.22652 0.96366 0.99884 0.97699 1.23025 0.99505 1.00567 0.95589 1.21480 0.84200 0.94416 0.95274 1.44497 1.06566 1.79242 1.00936 1.19035 0.83883 1.33139 1.00337 0.90546 1.24900 0.97280 0.99596 0.97952 1.69940 1.25174 1.47805 1.13172 0.86068 0.82820 0.78232 0.78788 1.20338 1.21503 1.21678 0.93052 0.92199 0.92469 0.90806 0.88692 0.76974 0.77962 0.91668 0.90741 0.91780 0.92593 0.92289 0.92259 0.90707 0.95607 0.93589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.89 37.16 0.37 -1.33 16 2 C -0.05 -0.64 5.93 -27.88 -0.17 -0.80 16 3 C 0.10 1.31 6.40 -82.52 -0.53 0.78 16 4 N -0.50 -6.23 11.20 -10.65 -0.12 -6.35 16 5 C 0.21 1.82 13.01 -90.57 -1.18 0.64 16 6 N -0.56 -4.80 6.07 -10.79 -0.07 -4.87 16 7 H 0.42 2.18 8.32 -40.82 -0.34 1.84 16 8 C -0.08 -1.09 7.08 -82.14 -0.58 -1.67 16 9 C 0.59 9.17 7.79 -12.81 -0.10 9.07 16 10 O -0.52 -9.99 14.82 5.21 0.08 -9.91 16 11 N -0.72 -10.29 5.40 -61.59 -0.33 -10.63 16 12 C 0.11 2.03 5.09 -4.04 -0.02 2.00 16 13 C 0.15 2.86 3.22 -66.95 -0.22 2.64 16 14 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 15 C -0.13 -1.99 6.07 -24.83 -0.15 -2.14 16 16 C -0.15 -2.59 7.10 -24.52 -0.17 -2.76 16 17 C 0.17 3.96 5.42 -2.53 -0.01 3.95 16 18 N -0.59 -14.20 3.13 -162.57 -0.51 -14.70 16 19 C -0.24 -6.34 9.73 -15.06 -0.15 -6.49 16 20 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 21 C 0.00 0.00 5.47 -17.43 -0.10 -0.09 16 22 N -0.91 -26.21 10.54 55.49 0.58 -25.62 16 23 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.09 1.38 6.49 -51.93 -0.34 1.04 16 32 H 0.21 0.79 8.06 -52.48 -0.42 0.37 16 33 H 0.39 4.17 7.49 -40.82 -0.31 3.87 16 34 H 0.06 1.33 8.03 -51.93 -0.42 0.91 16 35 H 0.07 1.60 7.86 -51.93 -0.41 1.19 16 36 H 0.06 0.99 7.78 -51.93 -0.40 0.59 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 1.94 6.86 -51.93 -0.36 1.58 16 41 H 0.03 0.65 8.08 -51.93 -0.42 0.23 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 344.47 15.07 5.19 5.19 Total: -1.00 -33.25 344.47 -9.54 -42.78 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.34 Total: 3.46 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -3.00 Total: 3.80 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -0.44 Total: -62.17 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.25 -9.54 -42.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028289848.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.893 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds