Wall clock time and date at job start Tue Mar 31 2020 02:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47233 * 2 1 4 4 N 1.33319 * 126.10747 * 270.12615 * 3 2 1 5 5 C 1.30854 * 109.68817 * 180.27453 * 4 3 2 6 6 N 1.34499 * 109.16052 * 359.75709 * 5 4 3 7 7 H 0.97006 * 126.46871 * 180.02562 * 6 5 4 8 8 C 1.36658 * 126.10907 * 89.99872 * 3 2 1 9 9 C 1.46770 * 126.84537 * 359.97438 * 8 3 2 10 10 O 1.21681 * 119.99813 * 359.71667 * 9 8 3 11 11 N 1.34772 * 119.99962 * 179.70937 * 9 8 3 12 12 C 1.46504 * 119.99676 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.46991 * 184.66328 * 12 11 9 14 14 H 1.08997 * 110.00037 * 54.40463 * 13 12 11 15 15 C 1.54328 * 109.88253 * 293.30821 * 13 12 11 16 16 C 1.55271 * 103.00829 * 218.46742 * 15 13 12 17 17 C 1.54911 * 101.52965 * 35.36431 * 16 15 13 18 18 N 1.47023 * 109.88399 * 175.50576 * 13 12 11 19 19 C 1.36945 * 125.64364 * 298.33764 * 18 13 12 20 20 H 1.07999 * 119.99844 * 346.28822 * 19 18 13 21 21 C 1.38811 * 119.99530 * 166.29381 * 19 18 13 22 22 N 1.31613 * 120.00483 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99613 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47237 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47267 * 119.99835 * 23 21 19 26 26 H 1.48494 * 109.47391 * 240.00014 * 23 21 19 27 27 H 1.08999 * 109.47214 * 60.00403 * 1 2 3 28 28 H 1.09003 * 109.47222 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47404 * 300.00198 * 1 2 3 30 30 H 1.09004 * 109.47133 * 239.99754 * 2 1 3 31 31 H 1.09002 * 109.47198 * 120.00125 * 2 1 3 32 32 H 1.08003 * 125.42323 * 179.78365 * 5 4 3 33 33 H 0.96996 * 120.00164 * 0.02562 * 11 9 8 34 34 H 1.09000 * 109.47103 * 64.66430 * 12 11 9 35 35 H 1.08998 * 109.47218 * 304.66198 * 12 11 9 36 36 H 1.08999 * 110.71908 * 336.76021 * 15 13 12 37 37 H 1.09000 * 110.71633 * 100.02768 * 15 13 12 38 38 H 1.09002 * 110.96391 * 277.33660 * 16 15 13 39 39 H 1.09005 * 111.09857 * 153.45022 * 16 15 13 40 40 H 1.08998 * 110.36709 * 204.23305 * 17 16 15 41 41 H 1.09001 * 110.36536 * 82.01625 * 17 16 15 42 42 H 0.97000 * 120.00236 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2920 2.1623 -1.0771 5 6 2.7168 3.3434 -0.7072 6 7 2.7397 3.4035 0.6362 7 1 3.0127 4.1627 1.1748 8 6 2.3008 2.1801 1.1041 9 6 2.1569 1.7746 2.5073 10 8 1.7562 0.6585 2.7800 11 7 2.4686 2.6385 3.4937 12 6 2.3254 2.2335 4.8943 13 6 2.6304 3.4256 5.8036 14 1 2.0053 4.2747 5.5272 15 6 4.1203 3.8097 5.6836 16 6 4.5038 4.1818 7.1414 17 6 3.6519 3.1739 7.9526 18 7 2.3856 3.0601 7.2064 19 6 1.1806 2.6776 7.7328 20 1 0.2717 2.8344 7.1710 21 6 1.1275 2.0884 8.9886 22 7 2.2352 1.8970 9.6731 23 14 -0.5162 1.5673 9.7070 24 1 -1.6012 1.8905 8.7460 25 1 -0.5023 0.1050 9.9653 26 1 -0.7519 2.2928 10.9811 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.0029 4.1430 -1.3745 33 1 2.7878 3.5282 3.2762 34 1 3.0218 1.4236 5.1114 35 1 1.3053 1.8929 5.0716 36 1 4.7103 2.9617 5.3358 37 1 4.2456 4.6658 5.0207 38 1 4.2173 5.2084 7.3701 39 1 5.5679 4.0260 7.3192 40 1 3.4674 3.5550 8.9570 41 1 4.1522 2.2066 8.0005 42 1 2.1981 1.4850 10.5505 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028289848.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:36 Heat of formation + Delta-G solvation = 11.165828 kcal Electronic energy + Delta-G solvation = -23491.143702 eV Core-core repulsion = 20085.338768 eV Total energy + Delta-G solvation = -3405.804934 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.22433 -40.53820 -39.21819 -36.08986 -35.02557 -34.40212 -33.07493 -31.49554 -30.77809 -29.66084 -26.81202 -25.99012 -24.72737 -23.61581 -22.22874 -21.92370 -21.33459 -20.59221 -19.74159 -18.67890 -17.39591 -17.19810 -16.77658 -16.64516 -16.00849 -15.79784 -15.64453 -15.52956 -14.89532 -14.77670 -14.55439 -14.32209 -13.99059 -13.67819 -13.44155 -13.31626 -13.06083 -12.88567 -12.72176 -12.42255 -12.04423 -11.99334 -11.87290 -11.72021 -11.50816 -11.47947 -11.42658 -11.01697 -10.90431 -10.71351 -10.25486 -9.51791 -8.88864 -7.90596 -5.28172 0.26301 1.42519 1.45006 1.53860 1.86998 1.88083 2.14952 2.24605 2.47919 3.29181 3.51410 3.67237 3.79889 3.91430 3.96187 4.10003 4.22736 4.24154 4.39346 4.48224 4.51468 4.56352 4.67433 4.70756 4.76277 4.93684 4.97266 5.05856 5.11689 5.15050 5.23422 5.27897 5.31927 5.45357 5.52225 5.53108 5.65082 5.77136 6.21050 6.35923 6.47281 6.94092 7.07124 7.11393 7.74183 8.38915 9.20013 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018800 B = 0.003922 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.983713 B = 7136.674456 C = 8265.232647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.051 4.051 3 C 0.084 3.916 4 N -0.533 5.533 5 C 0.244 3.756 6 N -0.539 5.539 7 H 0.441 0.559 8 C -0.105 4.105 9 C 0.585 3.415 10 O -0.565 6.565 11 N -0.704 5.704 12 C 0.131 3.869 13 C 0.148 3.852 14 H 0.051 0.949 15 C -0.114 4.114 16 C -0.133 4.133 17 C 0.171 3.829 18 N -0.611 5.611 19 C -0.240 4.240 20 H 0.076 0.924 21 C -0.057 4.057 22 N -0.944 5.944 23 Si 0.969 3.031 24 H -0.268 1.268 25 H -0.295 1.295 26 H -0.288 1.288 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.034 0.966 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.267 0.733 33 H 0.410 0.590 34 H 0.039 0.961 35 H 0.037 0.963 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.037 0.963 41 H -0.009 1.009 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.635 8.326 -20.254 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 C -0.050 4.050 4 N -0.253 5.253 5 C -0.041 4.041 6 N -0.145 5.145 7 H 0.283 0.717 8 C -0.221 4.221 9 C 0.373 3.627 10 O -0.444 6.444 11 N -0.356 5.356 12 C 0.004 3.996 13 C 0.041 3.959 14 H 0.069 0.931 15 C -0.152 4.152 16 C -0.171 4.171 17 C 0.047 3.953 18 N -0.335 5.335 19 C -0.369 4.369 20 H 0.093 0.907 21 C -0.251 4.251 22 N -0.592 5.592 23 Si 0.798 3.202 24 H -0.193 1.193 25 H -0.222 1.222 26 H -0.215 1.215 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.053 0.947 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.283 0.717 33 H 0.246 0.754 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.126 0.874 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.056 0.944 41 H 0.009 0.991 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.169 7.197 -20.592 22.208 hybrid contribution -0.557 0.188 2.037 2.120 sum 3.612 7.384 -18.555 20.294 Atomic orbital electron populations 1.21540 0.94021 1.02346 1.00879 1.20022 0.96611 0.89259 1.03051 1.21156 0.99115 0.97296 0.87447 1.70125 1.20386 1.04359 1.30431 1.26151 0.98006 0.97673 0.82250 1.43233 1.49533 1.12646 1.09134 0.71690 1.20593 1.17724 0.90209 0.93589 1.17226 0.77276 0.84594 0.83624 1.90819 1.48085 1.21873 1.83620 1.45668 1.67220 1.17137 1.05568 1.21743 0.99837 0.98825 0.79161 1.21346 0.96809 0.93583 0.84174 0.93108 1.22654 0.93173 1.01953 0.97384 1.22886 0.99662 0.99120 0.95468 1.21298 0.84859 0.94344 0.94847 1.44755 1.05993 1.79087 1.03694 1.19319 0.85262 1.32065 1.00259 0.90651 1.25632 1.00176 1.00571 0.98720 1.70136 1.26818 1.49097 1.13187 0.85149 0.79733 0.77189 0.78131 1.19286 1.22190 1.21456 0.92255 0.91028 0.94708 0.89683 0.90867 0.71727 0.75383 0.94236 0.94493 0.91521 0.87377 0.91070 0.89860 0.94430 0.99096 0.94291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 9.89 71.98 0.71 -2.51 16 2 C -0.05 -1.35 5.93 29.85 0.18 -1.17 16 3 C 0.08 2.21 6.40 41.96 0.27 2.48 16 4 N -0.53 -11.81 11.20 -187.60 -2.10 -13.92 16 5 C 0.24 3.05 13.01 180.33 2.35 5.40 16 6 N -0.54 -7.19 6.07 -188.04 -1.14 -8.33 16 7 H 0.44 2.37 8.32 -92.70 -0.77 1.59 16 8 C -0.10 -2.56 7.08 40.01 0.28 -2.28 16 9 C 0.59 18.19 7.79 86.47 0.67 18.87 16 10 O -0.57 -22.66 14.82 -4.29 -0.06 -22.72 16 11 N -0.70 -19.14 5.40 -467.00 -2.52 -21.66 16 12 C 0.13 4.87 5.09 86.38 0.44 5.31 16 13 C 0.15 5.39 3.22 45.34 0.15 5.53 16 14 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 15 C -0.11 -3.14 6.07 31.82 0.19 -2.95 16 16 C -0.13 -4.33 7.10 32.03 0.23 -4.10 16 17 C 0.17 8.13 5.42 86.86 0.47 8.60 16 18 N -0.61 -29.96 3.13 -668.26 -2.09 -32.05 16 19 C -0.24 -13.25 9.73 84.03 0.82 -12.43 16 20 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 21 C -0.06 -3.25 5.47 84.86 0.46 -2.78 16 22 N -0.94 -56.54 10.54 21.65 0.23 -56.31 16 23 Si 0.97 46.29 29.55 68.60 2.03 48.32 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 25 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 26 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 27 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.03 0.99 8.14 -2.39 -0.02 0.98 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 2.24 6.49 -2.39 -0.02 2.22 16 32 H 0.27 0.20 8.06 -2.91 -0.02 0.17 16 33 H 0.41 7.40 7.49 -92.71 -0.69 6.71 16 34 H 0.04 1.67 8.03 -2.39 -0.02 1.65 16 35 H 0.04 1.65 7.86 -2.39 -0.02 1.63 16 36 H 0.07 1.85 7.78 -2.39 -0.02 1.83 16 37 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 40 H 0.04 2.03 6.86 -2.39 -0.02 2.01 16 41 H -0.01 -0.48 8.08 -2.39 -0.02 -0.50 16 42 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -78.75 344.47 1.13 -77.62 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -0.42 Total: 11.09 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 7.22 Total: 17.96 kcal Atomic # 7 Polarization: -124.64 SS G_CDS: -7.63 Total: -132.27 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.06 Total: -22.72 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -78.75 1.13 -77.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028289848.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.787 kcal (2) G-P(sol) polarization free energy of solvation -78.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds