Wall clock time and date at job start Tue Mar 31 2020 03:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47188 * 2 1 4 4 C 1.53001 * 109.47031 * 120.00121 * 2 1 3 5 5 N 1.46501 * 109.47032 * 65.00121 * 4 2 1 6 6 N 1.28447 * 125.18850 * 273.42876 * 5 4 2 7 7 C 1.30866 * 110.92452 * 180.16404 * 6 5 4 8 8 C 1.39676 * 107.86525 * 359.61444 * 7 6 5 9 9 C 1.36600 * 125.19180 * 93.16737 * 5 4 2 10 10 C 1.47161 * 126.88466 * 359.97438 * 9 5 4 11 11 O 1.21630 * 119.99963 * 354.19661 * 10 9 5 12 12 N 1.34778 * 120.00439 * 174.19515 * 10 9 5 13 13 C 1.46495 * 120.00516 * 185.25411 * 12 10 9 14 14 C 1.53937 * 113.74183 * 253.74299 * 13 12 10 15 15 N 1.47814 * 86.03936 * 222.07971 * 14 13 12 16 16 C 1.36929 * 134.46473 * 204.64221 * 15 14 13 17 17 H 1.07994 * 120.00544 * 179.86801 * 16 15 14 18 18 C 1.38819 * 119.99564 * 359.87106 * 16 15 14 19 19 N 1.31616 * 120.00121 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99792 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47098 * 89.99838 * 20 18 16 22 22 H 1.48498 * 109.47066 * 209.99812 * 20 18 16 23 23 H 1.48503 * 109.47452 * 330.00104 * 20 18 16 24 24 C 1.47586 * 91.04390 * 24.54805 * 15 14 13 25 25 H 1.09001 * 109.47078 * 59.99763 * 1 2 3 26 26 H 1.09006 * 109.46844 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47180 * 299.99698 * 1 2 3 28 28 H 1.08998 * 109.46856 * 239.99869 * 2 1 3 29 29 H 1.09004 * 109.47416 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47305 * 300.00098 * 3 2 1 31 31 H 1.08998 * 109.47329 * 60.00159 * 3 2 1 32 32 H 1.08995 * 109.47644 * 304.99793 * 4 2 1 33 33 H 1.09000 * 109.46987 * 184.99797 * 4 2 1 34 34 H 1.07999 * 126.06591 * 179.88277 * 7 6 5 35 35 H 1.07992 * 127.32130 * 180.25582 * 8 7 6 36 36 H 0.97001 * 119.99170 * 5.25244 * 12 10 9 37 37 H 1.09006 * 112.93942 * 25.33360 * 13 12 10 38 38 H 1.09000 * 113.77438 * 336.34482 * 14 13 12 39 39 H 1.09007 * 113.77249 * 107.74363 * 14 13 12 40 40 H 0.96998 * 120.00245 * 179.97438 * 19 18 16 41 41 H 1.09004 * 113.76983 * 221.14935 * 24 15 14 42 42 H 1.09006 * 113.76508 * 89.75707 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 7 0.5332 -2.6109 1.6011 7 6 0.4827 -3.9057 1.4182 8 6 1.6832 -4.3017 0.8241 9 6 2.4242 -3.1408 0.6861 10 6 3.7730 -3.0172 0.1107 11 8 4.2684 -1.9176 -0.0471 12 7 4.4595 -4.1223 -0.2414 13 6 5.8440 -4.0077 -0.7060 14 6 6.0083 -4.2172 -2.2222 15 7 7.2059 -5.0127 -1.8788 16 6 8.3573 -5.3471 -2.5403 17 1 9.1022 -5.9582 -2.0526 18 6 8.5670 -4.9004 -3.8378 19 7 7.6590 -4.1559 -4.4323 20 14 10.1380 -5.3559 -4.7399 21 1 9.9345 -6.6295 -5.4760 22 1 10.4869 -4.2790 -5.7010 23 1 11.2414 -5.5215 -3.7599 24 6 6.6637 -5.2996 -0.5365 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6055 -0.2618 2.1370 33 1 3.1263 -0.6444 1.2951 34 1 -0.3427 -4.5526 1.6764 35 1 1.9717 -5.3010 0.5338 36 1 4.0366 -4.9936 -0.1871 37 1 6.3463 -3.1167 -0.3291 38 1 5.2073 -4.8020 -2.6743 39 1 6.2301 -3.3017 -2.7708 40 1 7.8056 -3.8434 -5.3388 41 1 7.4076 -5.2469 0.2584 42 1 6.0555 -6.2032 -0.4924 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030384365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:58 Heat of formation + Delta-G solvation = 91.392451 kcal Electronic energy + Delta-G solvation = -23398.110299 eV Core-core repulsion = 19995.784253 eV Total energy + Delta-G solvation = -3402.326046 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.58462 -39.38418 -37.51573 -36.61174 -33.72565 -32.14026 -31.89790 -30.68049 -27.51537 -27.28864 -26.63106 -24.88124 -24.04465 -22.46237 -21.44952 -20.83295 -19.92402 -19.38791 -17.77389 -16.83321 -16.24148 -16.10667 -15.64066 -15.02723 -14.98408 -14.40620 -14.36507 -14.08801 -13.84773 -13.65790 -13.28100 -12.83939 -12.70826 -12.40068 -12.15082 -11.96417 -11.53718 -11.50616 -11.46676 -11.14533 -10.93585 -10.90814 -10.83084 -10.78272 -10.50385 -10.10015 -9.78239 -9.57972 -9.22177 -9.05560 -8.84590 -8.52219 -6.96478 -5.80812 -3.15131 1.30421 2.36472 2.58045 3.33985 3.35961 3.39657 3.44305 3.45101 4.40550 4.42814 4.56232 4.69342 4.79298 4.89661 5.07087 5.13730 5.19803 5.37866 5.43610 5.46722 5.48413 5.51275 5.59846 5.67291 5.68439 5.79654 5.93480 5.94032 6.10055 6.14171 6.15691 6.34303 6.43561 6.48888 6.65595 6.71059 7.19214 7.28553 7.50739 7.71444 7.92471 8.03882 8.34811 8.99037 9.65520 10.51031 11.35859 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023510 B = 0.003401 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.705129 B = 8230.892805 C = 8991.152149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.142 4.142 4 C 0.120 3.880 5 N -0.253 5.253 6 N -0.279 5.279 7 C -0.008 4.008 8 C -0.194 4.194 9 C -0.030 4.030 10 C 0.585 3.415 11 O -0.540 6.540 12 N -0.698 5.698 13 C 0.094 3.906 14 C 0.155 3.845 15 N -0.606 5.606 16 C -0.227 4.227 17 H 0.082 0.918 18 C -0.005 4.005 19 N -0.918 5.918 20 Si 0.914 3.086 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.113 3.887 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.183 0.817 35 H 0.159 0.841 36 H 0.400 0.600 37 H 0.112 0.888 38 H 0.030 0.970 39 H 0.078 0.922 40 H 0.255 0.745 41 H 0.051 0.949 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.906 4.324 12.141 19.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.200 4.200 4 C 0.000 4.000 5 N -0.040 5.040 6 N -0.112 5.112 7 C -0.184 4.184 8 C -0.223 4.223 9 C -0.159 4.159 10 C 0.369 3.631 11 O -0.418 6.418 12 N -0.348 5.348 13 C -0.011 4.011 14 C 0.028 3.972 15 N -0.333 5.333 16 C -0.355 4.355 17 H 0.100 0.900 18 C -0.202 4.202 19 N -0.564 5.564 20 Si 0.744 3.256 21 H -0.215 1.215 22 H -0.215 1.215 23 H -0.205 1.205 24 C -0.014 4.014 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.136 0.864 34 H 0.201 0.799 35 H 0.177 0.823 36 H 0.234 0.766 37 H 0.130 0.870 38 H 0.048 0.952 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.839 6.176 12.183 20.168 hybrid contribution 0.895 -1.602 -0.936 2.060 sum -13.944 4.573 11.247 18.489 Atomic orbital electron populations 1.21874 0.94478 1.02470 1.01644 1.21413 0.96539 0.96948 0.97748 1.21734 1.01882 0.94311 1.02087 1.22361 1.03108 0.74465 1.00037 1.45766 1.09387 1.08129 1.40704 1.73176 1.05189 1.13019 1.19784 1.23528 0.99545 0.91148 1.04177 1.22251 0.95471 0.98151 1.06382 1.21622 0.96322 0.89489 1.08487 1.16971 0.82879 0.85226 0.77976 1.90784 1.69916 1.25780 1.55293 1.45878 1.14851 1.08492 1.65551 1.24006 0.78516 1.00174 0.98371 1.22717 0.87626 0.96302 0.90522 1.45716 1.16782 1.59466 1.11352 1.18983 0.93109 1.27708 0.95659 0.89994 1.24820 0.98491 1.00090 0.96809 1.69823 1.34205 1.38776 1.13636 0.86092 0.82378 0.77543 0.79554 1.21543 1.21546 1.20516 1.22876 0.94342 0.93896 0.90258 0.92615 0.92144 0.92543 0.90087 0.91707 0.91934 0.92537 0.88771 0.86429 0.79949 0.82300 0.76578 0.87021 0.95245 0.90382 0.93486 0.93086 0.94564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.97 37.16 0.33 -1.17 16 2 C -0.11 -1.18 3.13 -90.62 -0.28 -1.47 16 3 C -0.14 -1.32 9.19 37.15 0.34 -0.98 16 4 C 0.12 1.39 5.23 -4.04 -0.02 1.37 16 5 N -0.25 -3.31 3.10 -57.14 -0.18 -3.49 16 6 N -0.28 -3.52 10.58 30.59 0.32 -3.20 16 7 C -0.01 -0.09 12.03 -17.43 -0.21 -0.30 16 8 C -0.19 -2.17 10.50 -38.98 -0.41 -2.58 16 9 C -0.03 -0.42 6.96 -82.06 -0.57 -0.99 16 10 C 0.58 9.26 7.78 -12.64 -0.10 9.17 16 11 O -0.54 -9.99 14.37 5.25 0.08 -9.92 16 12 N -0.70 -10.55 5.36 -56.51 -0.30 -10.85 16 13 C 0.09 1.76 4.36 -70.16 -0.31 1.46 16 14 C 0.15 3.63 7.33 -2.84 -0.02 3.61 16 15 N -0.61 -15.28 3.70 -177.88 -0.66 -15.94 16 16 C -0.23 -6.30 10.70 -15.06 -0.16 -6.46 16 17 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 18 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 19 N -0.92 -27.24 11.39 55.49 0.63 -26.61 16 20 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.11 2.19 8.69 -2.97 -0.03 2.16 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.71 6.76 -51.93 -0.35 0.36 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.12 1.49 6.27 -51.93 -0.33 1.17 16 34 H 0.18 1.35 8.06 -52.49 -0.42 0.92 16 35 H 0.16 1.34 7.59 -52.49 -0.40 0.95 16 36 H 0.40 4.92 7.75 -40.82 -0.32 4.60 16 37 H 0.11 2.25 7.58 -51.93 -0.39 1.86 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 2.09 7.17 -51.93 -0.37 1.72 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.04 0.64 8.11 -51.93 -0.42 0.22 16 LS Contribution 348.42 15.07 5.25 5.25 Total: -1.00 -32.60 348.42 -7.76 -40.36 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.35 Total: 3.86 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.53 Total: 3.60 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.18 Total: -60.09 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.92 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.60 -7.76 -40.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030384365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.757 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds