Wall clock time and date at job start Tue Mar 31 2020 03:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.46937 * 2 1 4 4 C 1.35034 * 124.88827 * 125.00262 * 3 2 1 5 5 C 1.35354 * 107.23427 * 180.02562 * 4 3 2 6 6 C 1.41502 * 105.50443 * 0.02562 * 5 4 3 7 7 C 1.47709 * 126.52091 * 180.02562 * 6 5 4 8 8 O 1.21574 * 120.00097 * 355.43931 * 7 6 5 9 9 N 1.34782 * 119.99952 * 175.44362 * 7 6 5 10 10 C 1.46501 * 119.99792 * 5.46575 * 9 7 6 11 11 C 1.46498 * 119.99914 * 185.46966 * 9 7 6 12 12 H 1.09002 * 110.91858 * 356.09664 * 11 9 7 13 13 C 1.55157 * 111.00635 * 119.99916 * 11 9 7 14 14 C 1.54319 * 103.10390 * 153.66283 * 13 11 9 15 15 N 1.47018 * 107.27231 * 337.72126 * 14 13 11 16 16 C 1.36942 * 125.64942 * 178.90913 * 15 14 13 17 17 H 1.07997 * 120.00070 * 175.01076 * 16 15 14 18 18 C 1.38810 * 120.00038 * 355.00196 * 16 15 14 19 19 N 1.31624 * 119.99754 * 5.17053 * 18 16 15 20 20 Si 1.86791 * 120.00161 * 185.16108 * 18 16 15 21 21 H 1.48506 * 109.47239 * 95.00537 * 20 18 16 22 22 H 1.48505 * 109.47484 * 215.00226 * 20 18 16 23 23 H 1.48500 * 109.47242 * 335.00557 * 20 18 16 24 24 C 1.47424 * 108.70428 * 358.93901 * 15 14 13 25 25 N 1.28469 * 124.88779 * 305.33796 * 3 2 1 26 26 H 1.09000 * 109.47093 * 300.00123 * 1 2 3 27 27 H 1.09001 * 109.47909 * 60.00056 * 1 2 3 28 28 H 1.09000 * 109.47275 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47025 * 240.00337 * 2 1 3 30 30 H 1.08997 * 109.47460 * 119.99752 * 2 1 3 31 31 H 1.08001 * 126.37940 * 0.04435 * 4 3 2 32 32 H 1.08002 * 127.25437 * 179.97438 * 5 4 3 33 33 H 1.08990 * 109.47237 * 275.74216 * 10 9 7 34 34 H 1.08992 * 109.47302 * 35.74893 * 10 9 7 35 35 H 1.09007 * 109.46591 * 155.74387 * 10 9 7 36 36 H 1.09000 * 110.71808 * 35.20725 * 13 11 9 37 37 H 1.09000 * 110.71759 * 272.11921 * 13 11 9 38 38 H 1.09003 * 109.88159 * 97.13609 * 14 13 11 39 39 H 1.08997 * 109.88388 * 218.14339 * 14 13 11 40 40 H 0.97001 * 120.00031 * 179.97438 * 19 18 16 41 41 H 1.08992 * 110.36983 * 142.96964 * 24 15 14 42 42 H 1.08998 * 110.36612 * 265.18584 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.8747 1.8977 0.9073 5 6 3.0821 3.1923 0.5714 6 6 2.2990 3.4129 -0.5863 7 6 2.1839 4.6768 -1.3421 8 8 2.7342 5.6812 -0.9343 9 7 1.4688 4.7165 -2.4839 10 6 0.7078 3.5404 -2.9128 11 6 1.4526 5.9357 -3.2960 12 1 2.0090 6.7358 -2.8079 13 6 2.0048 5.6628 -4.7200 14 6 1.3140 6.7448 -5.5764 15 7 0.1035 7.1651 -4.8557 16 6 -0.7792 8.1263 -5.2706 17 1 -1.6837 8.3073 -4.7091 18 6 -0.5113 8.8680 -6.4130 19 7 0.5379 8.5798 -7.1536 20 14 -1.6399 10.2747 -6.8992 21 1 -1.0949 11.5515 -6.3717 22 1 -1.7291 10.3488 -8.3797 23 1 -2.9928 10.0425 -6.3327 24 6 -0.0023 6.3808 -3.6119 25 7 1.6885 2.2772 -0.8596 26 1 -0.3633 0.5139 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 3.3127 1.3749 1.7447 32 1 3.7120 3.9070 1.0803 33 1 1.3643 2.8615 -3.4569 34 1 0.3025 3.0312 -2.0385 35 1 -0.1097 3.8537 -3.5622 36 1 1.7235 4.6655 -5.0582 37 1 3.0877 5.7853 -4.7437 38 1 1.9819 7.5963 -5.7073 39 1 1.0450 6.3322 -6.5487 40 1 0.7249 9.0979 -7.9521 41 1 -0.3927 7.0005 -2.8047 42 1 -0.6416 5.5113 -3.7649 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033471019.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:47 Heat of formation + Delta-G solvation = 90.275265 kcal Electronic energy + Delta-G solvation = -23591.234987 eV Core-core repulsion = 20188.860496 eV Total energy + Delta-G solvation = -3402.374491 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.77094 -39.46866 -37.17887 -34.88624 -34.62485 -32.12770 -30.82458 -30.21157 -29.10351 -27.40751 -26.61248 -25.09064 -24.10098 -22.39057 -21.45209 -20.11643 -20.03181 -18.87200 -17.49942 -16.89480 -16.78012 -16.28862 -15.69860 -14.96350 -14.61481 -14.57961 -14.05626 -13.89063 -13.73463 -13.38865 -12.88832 -12.72464 -12.62299 -12.55672 -12.47360 -12.05885 -11.97968 -11.79293 -11.62982 -10.89756 -10.80539 -10.67268 -10.61334 -10.25253 -10.04448 -9.76851 -9.70724 -9.63624 -9.35979 -9.16112 -8.55055 -8.19953 -6.78217 -5.67617 -3.00984 1.58517 2.06354 2.24944 3.27658 3.44499 3.49494 3.51276 3.57227 4.05300 4.45370 4.53880 4.56779 4.60334 4.71048 5.01311 5.16586 5.33387 5.43888 5.48763 5.51596 5.55839 5.65185 5.67614 5.72670 5.77903 5.89316 5.90999 6.06957 6.29767 6.35379 6.41795 6.57289 6.62241 6.69282 6.78785 7.09351 7.58610 7.66068 7.69332 7.83279 7.87701 8.29284 8.44522 9.25635 9.85742 10.51732 11.44094 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.032063 B = 0.003257 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.084514 B = 8594.655812 C = 8920.632209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.288 5.288 4 C -0.022 4.022 5 C -0.180 4.180 6 C -0.008 4.008 7 C 0.597 3.403 8 O -0.538 6.538 9 N -0.587 5.587 10 C 0.077 3.923 11 C 0.123 3.877 12 H 0.107 0.893 13 C -0.151 4.151 14 C 0.179 3.821 15 N -0.603 5.603 16 C -0.228 4.228 17 H 0.079 0.921 18 C -0.007 4.007 19 N -0.920 5.920 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.131 3.869 25 N -0.254 5.254 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.179 0.821 32 H 0.161 0.839 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.042 0.958 40 H 0.252 0.748 41 H 0.042 0.958 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.238 -20.775 15.339 26.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.002 4.002 3 N -0.077 5.077 4 C -0.165 4.165 5 C -0.208 4.208 6 C -0.168 4.168 7 C 0.383 3.617 8 O -0.413 6.413 9 N -0.319 5.319 10 C -0.066 4.066 11 C 0.019 3.981 12 H 0.125 0.875 13 C -0.191 4.191 14 C 0.054 3.946 15 N -0.330 5.330 16 C -0.356 4.356 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.568 5.568 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.206 1.206 24 C 0.004 3.996 25 N -0.091 5.091 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.119 0.881 31 H 0.196 0.804 32 H 0.178 0.822 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.713 -20.713 14.603 25.488 hybrid contribution 0.038 0.869 0.245 0.904 sum 2.751 -19.843 14.848 24.936 Atomic orbital electron populations 1.22082 0.93076 1.03359 1.04094 1.21972 0.96725 0.76941 1.04594 1.45787 1.32343 1.10338 1.19242 1.22834 0.99575 0.95476 0.98605 1.21775 1.04704 0.96049 0.98292 1.22032 1.02258 0.93159 0.99333 1.16991 0.78989 0.85577 0.80120 1.90778 1.48114 1.34100 1.68333 1.47644 1.47149 1.14806 1.22253 1.22022 0.96118 0.86871 1.01573 1.22553 0.99083 0.85717 0.90736 0.87465 1.23224 1.00009 1.00674 0.95152 1.21149 0.87504 0.93236 0.92688 1.44381 1.26591 1.42956 1.19046 1.19065 0.99780 1.09369 1.07418 0.90362 1.24831 0.98171 0.99585 0.97763 1.69975 1.28600 1.41471 1.16714 0.86097 0.79713 0.82525 0.77420 1.21584 1.21784 1.20639 1.21858 0.92851 0.94719 0.90212 1.73728 1.21809 0.98088 1.15428 0.91850 0.90580 0.90304 0.88917 0.88086 0.80389 0.82157 0.93062 0.89572 0.90531 0.92185 0.91975 0.93007 0.94010 0.93747 0.93971 0.95856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 10.01 37.15 0.37 -0.48 16 2 C 0.12 0.58 7.12 -4.05 -0.03 0.55 16 3 N -0.29 -2.67 3.41 -61.34 -0.21 -2.88 16 4 C -0.02 -0.20 11.40 -17.17 -0.20 -0.39 16 5 C -0.18 -2.18 10.81 -39.37 -0.43 -2.61 16 6 C -0.01 -0.12 6.84 -82.77 -0.57 -0.68 16 7 C 0.60 10.73 7.67 -12.39 -0.10 10.64 16 8 O -0.54 -11.26 16.32 5.30 0.09 -11.17 16 9 N -0.59 -10.25 2.92 -172.35 -0.50 -10.76 16 10 C 0.08 1.12 8.35 59.85 0.50 1.62 16 11 C 0.12 2.47 3.48 -65.52 -0.23 2.24 16 12 H 0.11 2.37 7.02 -51.93 -0.36 2.01 16 13 C -0.15 -3.05 6.53 -24.90 -0.16 -3.22 16 14 C 0.18 4.51 5.38 -3.07 -0.02 4.49 16 15 N -0.60 -15.97 3.40 -169.78 -0.58 -16.55 16 16 C -0.23 -6.53 10.27 -15.06 -0.15 -6.68 16 17 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 18 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 19 N -0.92 -27.52 10.34 55.49 0.57 -26.94 16 20 Si 0.91 22.52 29.56 -169.99 -5.02 17.50 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.13 2.88 6.78 -2.27 -0.02 2.87 16 25 N -0.25 -3.19 8.24 33.42 0.28 -2.91 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.20 8.04 -51.93 -0.42 -0.21 16 31 H 0.18 0.81 8.06 -52.49 -0.42 0.38 16 32 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.15 5.68 -51.93 -0.29 0.86 16 35 H 0.08 1.13 5.97 -51.93 -0.31 0.82 16 36 H 0.06 1.12 7.33 -51.93 -0.38 0.74 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 1.44 7.25 -51.93 -0.38 1.06 16 39 H 0.04 1.14 7.64 -51.93 -0.40 0.74 16 40 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.02 0.50 5.99 -51.93 -0.31 0.19 16 LS Contribution 339.73 15.07 5.12 5.12 Total: -1.00 -34.81 339.73 -7.57 -42.38 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -6.20 Total: -1.82 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -1.11 Total: 8.04 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -0.44 Total: -60.04 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.81 -7.57 -42.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033471019.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.651 kcal (2) G-P(sol) polarization free energy of solvation -34.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds