Wall clock time and date at job start Tue Mar 31 2020 03:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47243 * 2 1 4 4 C 1.34778 * 119.99958 * 83.91221 * 3 2 1 5 5 O 1.21573 * 119.99837 * 185.54872 * 4 3 2 6 6 C 1.47714 * 120.00129 * 5.55282 * 4 3 2 7 7 N 1.31803 * 126.51624 * 354.43087 * 6 4 3 8 8 N 1.28469 * 110.07282 * 179.97438 * 7 6 4 9 9 H 0.97006 * 124.88761 * 179.97438 * 8 7 6 10 10 C 1.35033 * 110.22836 * 0.23504 * 8 7 6 11 11 C 1.35362 * 107.23136 * 359.62227 * 10 8 7 12 12 C 1.50697 * 127.25272 * 180.13101 * 11 10 8 13 13 C 1.46499 * 119.99721 * 263.92004 * 3 2 1 14 14 H 1.08992 * 110.88774 * 10.06764 * 13 3 2 15 15 C 1.55160 * 111.00207 * 246.18437 * 13 3 2 16 16 C 1.54321 * 102.94410 * 277.43040 * 15 13 3 17 17 N 1.47025 * 107.27185 * 337.80650 * 16 15 13 18 18 C 1.36931 * 125.64590 * 178.98645 * 17 16 15 19 19 H 1.07999 * 119.99961 * 179.97438 * 18 17 16 20 20 C 1.38814 * 120.00425 * 359.97438 * 18 17 16 21 21 N 1.31623 * 119.99652 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00278 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46768 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47145 * 119.99735 * 22 20 18 25 25 H 1.48502 * 109.47088 * 240.00009 * 22 20 18 26 26 C 1.47425 * 108.70099 * 358.94134 * 17 16 15 27 27 H 1.09005 * 109.46694 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47558 * 299.99975 * 1 2 3 29 29 H 1.08996 * 109.46819 * 60.00438 * 1 2 3 30 30 H 1.08999 * 109.47419 * 239.99492 * 2 1 3 31 31 H 1.09001 * 109.47256 * 119.99732 * 2 1 3 32 32 H 1.08001 * 126.38425 * 179.77481 * 10 8 7 33 33 H 1.08999 * 109.47038 * 270.27638 * 12 11 10 34 34 H 1.08998 * 109.47112 * 30.26981 * 12 11 10 35 35 H 1.08993 * 109.47282 * 150.27325 * 12 11 10 36 36 H 1.09001 * 110.71901 * 35.79839 * 15 13 3 37 37 H 1.09003 * 110.71519 * 159.06304 * 15 13 3 38 38 H 1.08998 * 109.88338 * 97.22432 * 16 15 13 39 39 H 1.08999 * 109.88186 * 218.23370 * 16 15 13 40 40 H 0.96998 * 119.99781 * 179.97438 * 21 20 18 41 41 H 1.09001 * 110.36696 * 265.28954 * 26 17 16 42 42 H 1.09006 * 110.36453 * 142.96707 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1263 2.0578 1.1606 5 8 2.4345 3.2338 1.1523 6 6 1.8703 1.3705 2.4428 7 7 1.4321 0.1372 2.5977 8 7 1.3228 -0.1382 3.8478 9 1 1.0183 -0.9874 4.2043 10 6 1.6873 0.9265 4.5940 11 6 2.0494 1.9109 3.7383 12 6 2.5355 3.2930 4.0909 13 6 2.3892 2.0270 -1.2616 14 1 2.0813 1.4209 -2.1136 15 6 3.9120 2.3207 -1.3094 16 6 4.0330 3.6462 -0.5284 17 7 2.7151 4.2968 -0.5658 18 6 2.3962 5.4883 0.0289 19 1 1.3950 5.8841 -0.0576 20 6 3.3596 6.1876 0.7429 21 7 4.5796 5.7050 0.8487 22 14 2.9243 7.8126 1.5548 23 1 1.4986 8.1323 1.2891 24 1 3.1441 7.7086 3.0197 25 1 3.7841 8.8889 1.0003 26 6 1.7942 3.4545 -1.3506 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6917 0.9816 5.6726 33 1 1.6840 3.9692 4.1668 34 1 3.0602 3.2610 5.0457 35 1 3.2138 3.6485 3.3153 36 1 4.4733 1.5285 -0.8139 37 1 4.2482 2.4473 -2.3385 38 1 4.3171 3.4435 0.5042 39 1 4.7788 4.2869 -0.9989 40 1 5.2529 6.1938 1.3473 41 1 1.7645 3.7891 -2.3876 42 1 0.7952 3.4769 -0.9151 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033824013.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:20 Heat of formation + Delta-G solvation = 106.005426 kcal Electronic energy + Delta-G solvation = -25675.178317 eV Core-core repulsion = 22273.485937 eV Total energy + Delta-G solvation = -3401.692380 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.47939 -40.96663 -37.66174 -36.57724 -34.12128 -33.78487 -31.99982 -31.33903 -30.34761 -28.74483 -27.93621 -26.36209 -25.11045 -23.64175 -22.22553 -21.71402 -21.11826 -19.43883 -18.78953 -18.52564 -17.69619 -16.92756 -16.65407 -16.41606 -15.81360 -15.55765 -15.31694 -14.74354 -14.51933 -14.18008 -13.82335 -13.79829 -13.60144 -13.51691 -13.36893 -13.17392 -12.93041 -12.79941 -12.69650 -12.57482 -12.13724 -12.06168 -11.91100 -11.82441 -11.58293 -11.33482 -11.08282 -10.51447 -10.20672 -10.04983 -9.66585 -9.19396 -8.21132 -7.55229 -4.77564 0.85008 1.31464 1.45612 1.47289 1.55569 2.09705 2.46163 2.65506 2.80084 3.59696 3.62602 3.88043 4.00351 4.08297 4.17737 4.30322 4.37568 4.43850 4.55077 4.64145 4.71517 4.73692 4.81828 4.88825 4.89840 4.96738 5.04848 5.11170 5.16353 5.20713 5.23730 5.30548 5.48683 5.60531 5.69656 5.88899 6.06885 6.14104 6.33303 6.48525 6.82324 7.07863 7.40181 7.86060 8.10482 8.75422 9.56791 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015378 B = 0.007748 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.395609 B = 3612.980217 C = 4841.135171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.102 3.898 3 N -0.603 5.603 4 C 0.529 3.471 5 O -0.448 6.448 6 C -0.027 4.027 7 N -0.258 5.258 8 N -0.371 5.371 9 H 0.463 0.537 10 C 0.006 3.994 11 C -0.187 4.187 12 C -0.066 4.066 13 C 0.146 3.854 14 H 0.130 0.870 15 C -0.146 4.146 16 C 0.205 3.795 17 N -0.576 5.576 18 C -0.183 4.183 19 H 0.057 0.943 20 C -0.061 4.061 21 N -0.945 5.945 22 Si 0.952 3.048 23 H -0.276 1.276 24 H -0.299 1.299 25 H -0.298 1.298 26 C 0.126 3.874 27 H 0.083 0.917 28 H 0.029 0.971 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.224 0.776 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.015 0.985 39 H -0.014 1.014 40 H 0.232 0.768 41 H 0.035 0.965 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.693 -18.920 4.172 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 N -0.339 5.339 4 C 0.313 3.687 5 O -0.314 6.314 6 C -0.187 4.187 7 N -0.096 5.096 8 N -0.087 5.087 9 H 0.311 0.689 10 C -0.139 4.139 11 C -0.197 4.197 12 C -0.124 4.124 13 C 0.042 3.958 14 H 0.148 0.852 15 C -0.186 4.186 16 C 0.081 3.919 17 N -0.301 5.301 18 C -0.313 4.313 19 H 0.075 0.925 20 C -0.253 4.253 21 N -0.597 5.597 22 Si 0.784 3.216 23 H -0.201 1.201 24 H -0.227 1.227 25 H -0.226 1.226 26 C 0.000 4.000 27 H 0.101 0.899 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.240 0.760 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.033 0.967 39 H 0.004 0.996 40 H 0.042 0.958 41 H 0.052 0.948 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -7.771 -18.996 3.667 20.850 hybrid contribution 0.111 1.656 1.299 2.108 sum -7.660 -17.340 4.967 19.597 Atomic orbital electron populations 1.21974 0.95887 1.02221 1.00387 1.21946 0.94633 0.81117 1.04302 1.47773 1.66439 1.14810 1.04906 1.17984 0.80342 0.87376 0.83026 1.91626 1.41349 1.13336 1.85054 1.22297 1.08298 0.92503 0.95574 1.73587 1.19609 1.15654 1.00741 1.43432 1.47418 1.14892 1.02943 0.68881 1.23034 1.03948 0.86920 1.00045 1.20544 1.08357 0.98808 0.92019 1.19904 1.00029 0.91335 1.01147 1.22253 0.93837 0.93388 0.86337 0.85206 1.23237 0.96562 0.97839 1.00940 1.20703 0.86353 0.89083 0.95809 1.44222 1.07202 1.20550 1.58090 1.18989 0.94555 0.94276 1.23515 0.92501 1.25142 0.96261 1.01351 1.02580 1.70199 1.02705 1.39109 1.47708 0.85354 0.76979 0.81242 0.78034 1.20143 1.22677 1.22568 1.21932 0.93067 0.90728 0.94292 0.89861 0.95134 0.93525 0.89082 0.88451 0.75985 0.93209 0.90178 0.94241 0.91635 0.89697 0.96731 0.99631 0.95798 0.94756 0.96157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.81 71.98 0.71 -2.67 16 2 C 0.10 2.58 5.70 86.38 0.49 3.07 16 3 N -0.60 -21.07 2.57 -793.64 -2.04 -23.11 16 4 C 0.53 22.74 7.07 86.75 0.61 23.36 16 5 O -0.45 -23.82 7.18 -3.95 -0.03 -23.85 16 6 C -0.03 -0.97 6.72 42.46 0.29 -0.69 16 7 N -0.26 -6.97 7.73 -48.18 -0.37 -7.34 16 8 N -0.37 -6.87 6.83 -57.51 -0.39 -7.26 16 9 H 0.46 3.89 8.96 -219.98 -1.97 1.92 16 10 C 0.01 0.12 11.97 83.54 1.00 1.12 16 11 C -0.19 -6.29 6.25 -19.72 -0.12 -6.41 16 12 C -0.07 -2.54 9.88 71.24 0.70 -1.83 16 13 C 0.15 5.13 3.77 46.38 0.17 5.31 16 14 H 0.13 3.35 7.91 -2.39 -0.02 3.33 16 15 C -0.15 -5.74 6.52 31.78 0.21 -5.53 16 16 C 0.21 11.08 4.22 86.73 0.37 11.45 16 17 N -0.58 -31.80 1.73 -691.98 -1.20 -33.00 16 18 C -0.18 -11.22 8.73 84.03 0.73 -10.49 16 19 H 0.06 3.48 7.83 -2.91 -0.02 3.45 16 20 C -0.06 -3.82 5.49 84.86 0.47 -3.36 16 21 N -0.95 -61.52 10.31 21.65 0.22 -61.30 16 22 Si 0.95 50.56 29.55 68.60 2.03 52.58 16 23 H -0.28 -14.05 7.11 99.48 0.71 -13.35 16 24 H -0.30 -15.88 7.11 99.48 0.71 -15.18 16 25 H -0.30 -15.68 7.11 99.48 0.71 -14.97 16 26 C 0.13 5.57 6.17 86.86 0.54 6.11 16 27 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.03 0.85 7.31 -2.39 -0.02 0.83 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.80 7.92 -2.39 -0.02 1.78 16 31 H 0.10 2.52 5.20 -2.39 -0.01 2.50 16 32 H 0.22 2.48 8.06 -2.91 -0.02 2.45 16 33 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.04 1.96 6.84 -2.39 -0.02 1.94 16 36 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 38 H 0.01 0.91 5.86 -2.39 -0.01 0.90 16 39 H -0.01 -0.88 7.50 -2.39 -0.02 -0.90 16 40 H 0.23 14.89 8.31 -92.71 -0.77 14.12 16 41 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -83.92 326.37 3.44 -80.48 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -0.94 Total: 3.35 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: 6.16 Total: 19.44 kcal Atomic # 7 Polarization: -128.23 SS G_CDS: -3.78 Total: -132.01 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.03 Total: -23.85 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 2.03 Total: 52.58 kcal Total: -83.92 3.44 -80.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033824013.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.490 kcal (2) G-P(sol) polarization free energy of solvation -83.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds