Wall clock time and date at job start Tue Mar 31 2020 03:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35033 * 124.88282 * 2 1 4 4 C 1.35364 * 107.22797 * 180.02562 * 3 2 1 5 5 C 1.41497 * 105.50178 * 359.97438 * 4 3 2 6 6 C 1.47718 * 126.51650 * 180.02562 * 5 4 3 7 7 O 1.21571 * 119.99884 * 359.97438 * 6 5 4 8 8 N 1.34768 * 120.00096 * 180.02562 * 6 5 4 9 9 C 1.46504 * 120.00048 * 179.97438 * 8 6 5 10 10 H 1.08992 * 109.36025 * 324.71977 * 9 8 6 11 11 C 1.54848 * 109.35752 * 204.99495 * 9 8 6 12 12 C 1.50127 * 110.81324 * 200.92532 * 11 9 8 13 13 C 1.52524 * 105.41056 * 97.69134 * 12 11 9 14 14 C 1.46246 * 114.27473 * 270.58696 * 13 12 11 15 15 N 1.50174 * 107.52763 * 58.41316 * 14 13 12 16 16 C 1.36931 * 120.53639 * 109.56731 * 15 14 13 17 17 H 1.08004 * 119.99977 * 172.84410 * 16 15 14 18 18 C 1.38819 * 120.00300 * 352.84291 * 16 15 14 19 19 N 1.31616 * 119.99532 * 319.30052 * 18 16 15 20 20 Si 1.86802 * 120.00013 * 139.29464 * 18 16 15 21 21 H 1.48494 * 109.46784 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47014 * 60.00199 * 20 18 16 23 23 H 1.48496 * 109.47313 * 300.00228 * 20 18 16 24 24 C 1.43432 * 118.92662 * 289.83617 * 15 14 13 25 25 N 1.28468 * 124.88338 * 180.32493 * 2 1 3 26 26 H 1.08997 * 109.46899 * 90.01296 * 1 2 3 27 27 H 1.09005 * 109.46913 * 210.00735 * 1 2 3 28 28 H 1.08998 * 109.47200 * 330.00757 * 1 2 3 29 29 H 1.08000 * 126.38497 * 359.97438 * 3 2 1 30 30 H 1.07997 * 127.24691 * 179.97438 * 4 3 2 31 31 H 0.97006 * 120.00326 * 359.97438 * 8 6 5 32 32 H 1.09003 * 109.20441 * 80.58964 * 11 9 8 33 33 H 1.08999 * 109.20970 * 321.27605 * 11 9 8 34 34 H 1.08992 * 110.25071 * 338.71747 * 12 11 9 35 35 H 1.08998 * 110.36908 * 216.71900 * 12 11 9 36 36 H 1.08999 * 108.52632 * 149.35177 * 13 12 11 37 37 H 1.08994 * 108.40503 * 31.74138 * 13 12 11 38 38 H 1.08994 * 109.84609 * 298.90236 * 14 13 12 39 39 H 1.09005 * 109.90189 * 177.94928 * 14 13 12 40 40 H 0.97000 * 120.00306 * 353.65432 * 19 18 16 41 41 H 1.08998 * 108.16066 * 213.03735 * 24 15 14 42 42 H 1.09004 * 108.15966 * 329.60760 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.1077 0.0000 4 6 3.5272 0.6972 -0.0006 5 6 3.4740 -0.7168 -0.0003 6 6 4.6273 -1.6398 -0.0002 7 8 5.7598 -1.1976 -0.0008 8 7 4.4242 -2.9721 -0.0005 9 6 5.5681 -3.8875 -0.0009 10 1 6.3745 -3.4577 -0.5949 11 6 5.1413 -5.2418 -0.6184 12 6 6.0737 -6.3391 -0.1937 13 6 5.3808 -7.0294 0.9766 14 6 5.6957 -6.4562 2.2847 15 7 5.2955 -5.0091 2.2525 16 6 4.2183 -4.5689 2.9743 17 1 4.0067 -3.5117 3.0382 18 6 3.3983 -5.4814 3.6238 19 7 3.0733 -6.6114 3.0324 20 14 2.7562 -5.1055 5.3373 21 1 1.9094 -6.2315 5.8065 22 1 1.9486 -3.8598 5.3010 23 1 3.9005 -4.9267 6.2666 24 6 6.0563 -4.0966 1.4489 25 7 2.1997 -1.0538 -0.0060 26 1 -0.3633 -0.0002 -1.0277 27 1 -0.3633 -0.8900 0.5140 28 1 -0.3633 0.8900 0.5137 29 1 1.8904 2.1305 -0.0004 30 1 4.4108 1.3181 -0.0011 31 1 3.5206 -3.3250 -0.0003 32 1 5.1549 -5.1605 -1.7054 33 1 4.1303 -5.4830 -0.2901 34 1 7.0279 -5.9207 0.1263 35 1 6.2267 -7.0444 -1.0106 36 1 5.6711 -8.0800 0.9802 37 1 4.3035 -6.9695 0.8226 38 1 6.7651 -6.5402 2.4778 39 1 5.1373 -6.9773 3.0624 40 1 3.3293 -6.7670 2.1098 41 1 6.0572 -3.1262 1.9452 42 1 7.0855 -4.4538 1.4113 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034532035.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:25 Heat of formation + Delta-G solvation = 80.052381 kcal Electronic energy + Delta-G solvation = -24431.255075 eV Core-core repulsion = 21028.437286 eV Total energy + Delta-G solvation = -3402.817789 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.49545 -39.24429 -37.75066 -34.35567 -33.43247 -33.17814 -31.14632 -30.66001 -29.86619 -27.47201 -25.93186 -24.29529 -23.14912 -22.18583 -21.36353 -20.39833 -19.43965 -19.16487 -17.63498 -17.02642 -16.28484 -16.20191 -15.56619 -15.02457 -14.54869 -14.24127 -13.94712 -13.63739 -13.56630 -13.45922 -13.07399 -12.77247 -12.67381 -12.59683 -12.29141 -12.07235 -11.75496 -11.00314 -10.80695 -10.76155 -10.53755 -10.32853 -10.10093 -9.98559 -9.76579 -9.69866 -9.55342 -9.38665 -9.17491 -8.97211 -8.57094 -8.06728 -6.88843 -6.10604 -2.94615 1.82065 2.26290 2.51452 3.54404 3.61414 3.71907 3.77500 3.88781 4.39769 4.66821 4.78451 4.90132 5.01110 5.20504 5.21171 5.27730 5.37159 5.44059 5.48358 5.72779 5.80196 5.86395 6.01281 6.06007 6.08919 6.30969 6.41309 6.44875 6.51023 6.66772 6.75021 6.76650 6.79562 6.92627 6.98190 7.19177 7.29382 7.31112 7.90651 8.08103 8.22650 8.60201 8.75944 9.15127 9.92812 10.36742 11.19959 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013204 B = 0.006017 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.996831 B = 4652.541677 C = 5946.804986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.289 5.289 3 C -0.026 4.026 4 C -0.182 4.182 5 C -0.009 4.009 6 C 0.600 3.400 7 O -0.550 6.550 8 N -0.688 5.688 9 C 0.114 3.886 10 H 0.076 0.924 11 C -0.112 4.112 12 C -0.110 4.110 13 C -0.135 4.135 14 C 0.130 3.870 15 N -0.586 5.586 16 C -0.347 4.347 17 H 0.063 0.937 18 C -0.017 4.017 19 N -0.903 5.903 20 Si 1.034 2.966 21 H -0.288 1.288 22 H -0.297 1.297 23 H -0.296 1.296 24 C 0.153 3.847 25 N -0.256 5.256 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.179 0.821 30 H 0.160 0.840 31 H 0.405 0.595 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.039 0.961 37 H 0.071 0.929 38 H 0.023 0.977 39 H 0.094 0.906 40 H 0.272 0.728 41 H 0.042 0.958 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.269 9.963 -8.600 13.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.077 5.077 3 C -0.169 4.169 4 C -0.210 4.210 5 C -0.170 4.170 6 C 0.384 3.616 7 O -0.427 6.427 8 N -0.337 5.337 9 C 0.006 3.994 10 H 0.094 0.906 11 C -0.150 4.150 12 C -0.148 4.148 13 C -0.175 4.175 14 C 0.006 3.994 15 N -0.308 5.308 16 C -0.475 4.475 17 H 0.081 0.919 18 C -0.219 4.219 19 N -0.546 5.546 20 Si 0.865 3.135 21 H -0.214 1.214 22 H -0.224 1.224 23 H -0.224 1.224 24 C 0.022 3.978 25 N -0.092 5.092 26 H 0.101 0.899 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.197 0.803 30 H 0.178 0.822 31 H 0.240 0.760 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.042 0.958 39 H 0.112 0.888 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.201 8.713 -7.285 12.109 hybrid contribution 0.622 1.389 -1.319 2.014 sum -3.579 10.102 -8.604 13.744 Atomic orbital electron populations 1.22144 0.73450 1.05527 1.04171 1.45407 1.07738 1.03177 1.51385 1.22800 0.91088 0.93618 1.09348 1.21762 0.97164 0.93696 1.08361 1.22120 0.90859 0.94262 1.09723 1.16828 0.86321 0.81776 0.76720 1.90734 1.22518 1.77333 1.52069 1.45856 1.10973 1.04798 1.72069 1.22808 0.87764 0.88116 1.00719 0.90584 1.21665 1.00843 0.94245 0.98226 1.20938 0.98832 0.97001 0.97995 1.21100 1.01604 0.98032 0.96724 1.20595 0.97005 0.85297 0.96542 1.44386 1.32616 1.03582 1.50175 1.19904 1.06874 0.93501 1.27200 0.91868 1.25347 0.96593 0.95405 1.04539 1.70860 1.39992 1.29482 1.14245 0.83967 0.75814 0.75150 0.78590 1.21420 1.22412 1.22386 1.20635 0.93569 0.94554 0.89017 1.73614 1.03148 1.13775 1.18679 0.89934 0.88365 0.88793 0.80342 0.82222 0.75952 0.93643 0.90984 0.91716 0.92652 0.94246 0.91035 0.95832 0.88764 0.91444 0.93986 0.94360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 11.31 59.85 0.68 1.34 16 2 N -0.29 -3.68 3.70 -68.13 -0.25 -3.93 16 3 C -0.03 -0.30 11.46 -17.17 -0.20 -0.50 16 4 C -0.18 -2.68 10.81 -39.37 -0.43 -3.11 16 5 C -0.01 -0.16 7.13 -82.76 -0.59 -0.75 16 6 C 0.60 12.11 7.64 -12.39 -0.09 12.02 16 7 O -0.55 -12.19 16.59 5.30 0.09 -12.10 16 8 N -0.69 -13.60 5.08 -53.13 -0.27 -13.87 16 9 C 0.11 2.21 2.91 -66.22 -0.19 2.02 16 10 H 0.08 1.46 7.58 -51.93 -0.39 1.06 16 11 C -0.11 -1.99 5.23 -27.19 -0.14 -2.13 16 12 C -0.11 -1.87 5.76 -28.40 -0.16 -2.04 16 13 C -0.14 -2.69 4.96 -30.19 -0.15 -2.84 16 14 C 0.13 2.95 5.22 -5.20 -0.03 2.92 16 15 N -0.59 -14.28 2.62 -175.39 -0.46 -14.74 16 16 C -0.35 -9.50 9.46 -15.06 -0.14 -9.64 16 17 H 0.06 1.84 8.05 -52.48 -0.42 1.41 16 18 C -0.02 -0.47 4.53 -17.43 -0.08 -0.55 16 19 N -0.90 -25.77 11.99 55.49 0.67 -25.10 16 20 Si 1.03 25.32 30.06 -169.99 -5.11 20.21 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 24 C 0.15 3.36 4.75 -4.93 -0.02 3.33 16 25 N -0.26 -4.31 11.67 33.42 0.39 -3.92 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.09 0.42 8.13 -51.93 -0.42 0.00 16 29 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.16 2.14 8.06 -52.49 -0.42 1.72 16 31 H 0.41 8.11 8.17 -40.82 -0.33 7.77 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.45 6.58 -51.93 -0.34 1.11 16 34 H 0.06 1.10 6.28 -51.93 -0.33 0.77 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.60 4.65 -51.93 -0.24 1.36 16 38 H 0.02 0.50 8.13 -51.93 -0.42 0.08 16 39 H 0.09 2.43 5.61 -51.93 -0.29 2.14 16 40 H 0.27 7.57 4.95 -40.82 -0.20 7.36 16 41 H 0.04 1.02 7.81 -51.93 -0.41 0.62 16 42 H 0.04 0.79 6.89 -51.93 -0.36 0.43 16 LS Contribution 333.81 15.07 5.03 5.03 Total: -1.00 -33.15 333.81 -7.38 -40.53 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.91 Total: 7.83 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -1.55 Total: 0.07 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: 0.07 Total: -61.56 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.11 Total: 20.21 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.15 -7.38 -40.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034532035.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.585 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds