Wall clock time and date at job start Tue Mar 31 2020 03:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35033 * 124.88282 * 2 1 4 4 C 1.35364 * 107.22797 * 180.02562 * 3 2 1 5 5 C 1.41497 * 105.50178 * 359.97438 * 4 3 2 6 6 C 1.47718 * 126.51650 * 180.02562 * 5 4 3 7 7 O 1.21571 * 119.99884 * 359.97438 * 6 5 4 8 8 N 1.34768 * 120.00096 * 180.02562 * 6 5 4 9 9 C 1.46504 * 120.00048 * 179.97438 * 8 6 5 10 10 H 1.08992 * 109.36025 * 324.71977 * 9 8 6 11 11 C 1.54848 * 109.35752 * 204.99495 * 9 8 6 12 12 C 1.50127 * 110.81324 * 200.92532 * 11 9 8 13 13 C 1.52524 * 105.41056 * 97.69134 * 12 11 9 14 14 C 1.46246 * 114.27473 * 270.58696 * 13 12 11 15 15 N 1.50174 * 107.52763 * 58.41316 * 14 13 12 16 16 C 1.36931 * 120.53639 * 109.56731 * 15 14 13 17 17 H 1.08004 * 119.99977 * 172.84410 * 16 15 14 18 18 C 1.38819 * 120.00300 * 352.84291 * 16 15 14 19 19 N 1.31616 * 119.99532 * 319.30052 * 18 16 15 20 20 Si 1.86802 * 120.00013 * 139.29464 * 18 16 15 21 21 H 1.48494 * 109.46784 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47014 * 60.00199 * 20 18 16 23 23 H 1.48496 * 109.47313 * 300.00228 * 20 18 16 24 24 C 1.43432 * 118.92662 * 289.83617 * 15 14 13 25 25 N 1.28468 * 124.88338 * 180.32493 * 2 1 3 26 26 H 1.08997 * 109.46899 * 90.01296 * 1 2 3 27 27 H 1.09005 * 109.46913 * 210.00735 * 1 2 3 28 28 H 1.08998 * 109.47200 * 330.00757 * 1 2 3 29 29 H 1.08000 * 126.38497 * 359.97438 * 3 2 1 30 30 H 1.07997 * 127.24691 * 179.97438 * 4 3 2 31 31 H 0.97006 * 120.00326 * 359.97438 * 8 6 5 32 32 H 1.09003 * 109.20441 * 80.58964 * 11 9 8 33 33 H 1.08999 * 109.20970 * 321.27605 * 11 9 8 34 34 H 1.08992 * 110.25071 * 338.71747 * 12 11 9 35 35 H 1.08998 * 110.36908 * 216.71900 * 12 11 9 36 36 H 1.08999 * 108.52632 * 149.35177 * 13 12 11 37 37 H 1.08994 * 108.40503 * 31.74138 * 13 12 11 38 38 H 1.08994 * 109.84609 * 298.90236 * 14 13 12 39 39 H 1.09005 * 109.90189 * 177.94928 * 14 13 12 40 40 H 0.97000 * 120.00306 * 353.65432 * 19 18 16 41 41 H 1.08998 * 108.16066 * 213.03735 * 24 15 14 42 42 H 1.09004 * 108.15966 * 329.60760 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.1077 0.0000 4 6 3.5272 0.6972 -0.0006 5 6 3.4740 -0.7168 -0.0003 6 6 4.6273 -1.6398 -0.0002 7 8 5.7598 -1.1976 -0.0008 8 7 4.4242 -2.9721 -0.0005 9 6 5.5681 -3.8875 -0.0009 10 1 6.3745 -3.4577 -0.5949 11 6 5.1413 -5.2418 -0.6184 12 6 6.0737 -6.3391 -0.1937 13 6 5.3808 -7.0294 0.9766 14 6 5.6957 -6.4562 2.2847 15 7 5.2955 -5.0091 2.2525 16 6 4.2183 -4.5689 2.9743 17 1 4.0067 -3.5117 3.0382 18 6 3.3983 -5.4814 3.6238 19 7 3.0733 -6.6114 3.0324 20 14 2.7562 -5.1055 5.3373 21 1 1.9094 -6.2315 5.8065 22 1 1.9486 -3.8598 5.3010 23 1 3.9005 -4.9267 6.2666 24 6 6.0563 -4.0966 1.4489 25 7 2.1997 -1.0538 -0.0060 26 1 -0.3633 -0.0002 -1.0277 27 1 -0.3633 -0.8900 0.5140 28 1 -0.3633 0.8900 0.5137 29 1 1.8904 2.1305 -0.0004 30 1 4.4108 1.3181 -0.0011 31 1 3.5206 -3.3250 -0.0003 32 1 5.1549 -5.1605 -1.7054 33 1 4.1303 -5.4830 -0.2901 34 1 7.0279 -5.9207 0.1263 35 1 6.2267 -7.0444 -1.0106 36 1 5.6711 -8.0800 0.9802 37 1 4.3035 -6.9695 0.8226 38 1 6.7651 -6.5402 2.4778 39 1 5.1373 -6.9773 3.0624 40 1 3.3293 -6.7670 2.1098 41 1 6.0572 -3.1262 1.9452 42 1 7.0855 -4.4538 1.4113 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034532035.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:25 Heat of formation + Delta-G solvation = 57.496720 kcal Electronic energy + Delta-G solvation = -24432.233162 eV Core-core repulsion = 21028.437286 eV Total energy + Delta-G solvation = -3403.795876 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.57545 -40.84983 -39.42036 -36.10432 -34.93312 -34.37029 -32.99818 -31.96119 -31.36794 -28.54958 -27.68417 -25.86531 -24.83433 -23.71499 -22.40678 -22.05797 -20.89427 -20.77861 -19.01269 -18.79910 -17.51197 -17.23914 -17.18134 -16.60762 -16.30262 -15.90905 -15.58850 -15.20602 -15.06043 -14.73111 -14.33312 -14.20376 -13.87679 -13.78503 -13.57951 -13.43342 -13.36908 -12.77037 -12.56059 -12.46577 -12.17940 -11.95383 -11.92131 -11.75653 -11.54750 -11.29083 -11.18672 -11.13615 -10.41473 -10.25472 -10.08683 -9.91161 -8.85801 -8.28164 -5.07166 0.55168 1.21446 1.55457 1.61468 1.63916 1.81394 2.27878 2.43774 2.66651 3.12758 3.39515 3.46122 3.78286 3.96874 4.00398 4.03038 4.24405 4.38385 4.39358 4.43002 4.45574 4.48888 4.67187 4.68041 4.72262 4.75795 4.78871 4.92516 5.05932 5.12426 5.14604 5.29411 5.33317 5.40090 5.49351 5.60994 5.63581 5.91018 5.93018 6.47777 6.51472 6.91714 7.10465 7.21044 7.87747 8.31059 9.04433 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013204 B = 0.006017 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.996831 B = 4652.541677 C = 5946.804986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.282 5.282 3 C 0.004 3.996 4 C -0.207 4.207 5 C -0.050 4.050 6 C 0.594 3.406 7 O -0.579 6.579 8 N -0.690 5.690 9 C 0.119 3.881 10 H 0.083 0.917 11 C -0.102 4.102 12 C -0.101 4.101 13 C -0.128 4.128 14 C 0.133 3.867 15 N -0.597 5.597 16 C -0.348 4.348 17 H 0.037 0.963 18 C -0.056 4.056 19 N -0.923 5.923 20 Si 1.079 2.921 21 H -0.289 1.289 22 H -0.289 1.289 23 H -0.292 1.292 24 C 0.156 3.844 25 N -0.287 5.287 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.134 0.866 29 H 0.235 0.765 30 H 0.165 0.835 31 H 0.402 0.598 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.044 0.956 38 H 0.040 0.960 39 H 0.061 0.939 40 H 0.270 0.730 41 H 0.008 0.992 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.049 11.046 -9.522 15.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.071 5.071 3 C -0.139 4.139 4 C -0.235 4.235 5 C -0.208 4.208 6 C 0.380 3.620 7 O -0.459 6.459 8 N -0.337 5.337 9 C 0.011 3.989 10 H 0.101 0.899 11 C -0.140 4.140 12 C -0.138 4.138 13 C -0.167 4.167 14 C 0.009 3.991 15 N -0.320 5.320 16 C -0.477 4.477 17 H 0.055 0.945 18 C -0.255 4.255 19 N -0.567 5.567 20 Si 0.907 3.093 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.219 1.219 24 C 0.027 3.973 25 N -0.125 5.125 26 H 0.123 0.877 27 H 0.107 0.893 28 H 0.152 0.848 29 H 0.251 0.749 30 H 0.182 0.818 31 H 0.237 0.763 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.026 0.974 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.982 9.788 -8.224 13.721 hybrid contribution 0.805 1.136 -1.037 1.737 sum -4.176 10.924 -9.262 14.918 Atomic orbital electron populations 1.22627 0.70433 1.07062 1.06181 1.45960 1.09415 1.02684 1.49058 1.23527 0.89526 0.95269 1.05615 1.22023 0.99225 0.92393 1.09870 1.21977 0.90781 0.95282 1.12751 1.17266 0.86915 0.82057 0.75759 1.90686 1.23854 1.77800 1.53528 1.45890 1.10785 1.05018 1.72048 1.22689 0.88080 0.89277 0.98853 0.89894 1.21590 0.99518 0.93284 0.99624 1.20932 0.98218 0.96979 0.97694 1.20938 1.00184 0.99341 0.96270 1.20561 0.97197 0.84018 0.97314 1.44423 1.31895 1.04708 1.50950 1.19798 1.07605 0.92183 1.28101 0.94521 1.26253 0.97247 0.95408 1.06615 1.70902 1.41196 1.30104 1.14459 0.83323 0.75539 0.75080 0.75328 1.21533 1.21572 1.21917 1.20619 0.94243 0.92474 0.89981 1.73535 1.03088 1.15905 1.19926 0.87666 0.89344 0.84818 0.74913 0.81772 0.76308 0.90965 0.93555 0.91144 0.89265 0.92310 0.93762 0.94175 0.92023 0.91734 0.97384 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 11.31 127.77 1.44 2.35 16 2 N -0.28 -6.62 3.70 -369.45 -1.37 -7.98 16 3 C 0.00 0.08 11.46 83.54 0.96 1.03 16 4 C -0.21 -5.99 10.81 22.41 0.24 -5.75 16 5 C -0.05 -1.82 7.13 42.46 0.30 -1.52 16 6 C 0.59 25.05 7.64 86.75 0.66 25.71 16 7 O -0.58 -26.75 16.59 -3.94 -0.07 -26.81 16 8 N -0.69 -28.34 5.08 -440.29 -2.24 -30.57 16 9 C 0.12 4.65 2.91 46.10 0.13 4.78 16 10 H 0.08 3.16 7.58 -2.39 -0.02 3.14 16 11 C -0.10 -3.55 5.23 30.30 0.16 -3.39 16 12 C -0.10 -3.21 5.76 29.51 0.17 -3.04 16 13 C -0.13 -4.99 4.96 28.36 0.14 -4.85 16 14 C 0.13 6.05 5.22 83.58 0.44 6.48 16 15 N -0.60 -29.77 2.62 -708.82 -1.86 -31.63 16 16 C -0.35 -19.70 9.46 84.04 0.80 -18.90 16 17 H 0.04 2.24 8.05 -2.91 -0.02 2.22 16 18 C -0.06 -3.19 4.53 84.86 0.38 -2.80 16 19 N -0.92 -53.75 11.99 21.65 0.26 -53.49 16 20 Si 1.08 52.20 30.06 68.60 2.06 54.27 16 21 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 22 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 23 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 24 C 0.16 7.02 4.75 87.42 0.41 7.43 16 25 N -0.29 -9.67 11.67 -48.17 -0.56 -10.24 16 26 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.13 0.57 8.13 -2.39 -0.02 0.55 16 29 H 0.23 1.89 8.06 -2.91 -0.02 1.87 16 30 H 0.16 4.39 8.06 -2.91 -0.02 4.37 16 31 H 0.40 16.91 8.17 -92.70 -0.76 16.15 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.05 1.87 6.58 -2.39 -0.02 1.86 16 34 H 0.07 2.20 6.28 -2.39 -0.02 2.19 16 35 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.04 1.99 4.65 -2.39 -0.01 1.98 16 38 H 0.04 1.67 8.13 -2.39 -0.02 1.66 16 39 H 0.06 3.23 5.61 -2.38 -0.01 3.22 16 40 H 0.27 15.41 4.95 -92.71 -0.46 14.95 16 41 H 0.01 0.40 7.81 -2.39 -0.02 0.38 16 42 H 0.05 2.24 6.89 -2.39 -0.02 2.22 16 Total: -1.00 -75.84 333.81 3.07 -72.78 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.59 Total: 26.13 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 6.24 Total: 7.54 kcal Atomic # 7 Polarization: -128.14 SS G_CDS: -5.76 Total: -133.90 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.07 Total: -26.81 kcal Atomic # 14 Polarization: 52.20 SS G_CDS: 2.06 Total: 54.27 kcal Total: -75.84 3.07 -72.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034532035.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.274 kcal (2) G-P(sol) polarization free energy of solvation -75.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds