Wall clock time and date at job start Tue Mar 31 2020 02:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33317 * 126.10862 * 2 1 4 4 C 1.30859 * 109.68554 * 180.02562 * 3 2 1 5 5 N 1.34495 * 109.16458 * 0.02562 * 4 3 2 6 6 H 0.96997 * 126.47558 * 180.02562 * 5 4 3 7 7 C 1.36665 * 126.10299 * 180.02562 * 2 1 3 8 8 C 1.46762 * 126.84731 * 359.70394 * 7 2 1 9 9 O 1.21681 * 120.00188 * 0.02562 * 8 7 2 10 10 N 1.34777 * 119.99818 * 179.97438 * 8 7 2 11 11 C 1.46504 * 119.99911 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46798 * 34.99971 * 11 10 8 13 13 C 1.53001 * 109.47139 * 155.00152 * 11 10 8 14 14 C 1.52997 * 109.47083 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47100 * 300.00150 * 14 13 11 16 16 H 1.09004 * 109.46580 * 299.99840 * 15 14 13 17 17 N 1.46496 * 109.47181 * 180.02562 * 15 14 13 18 18 C 1.36944 * 119.99905 * 154.99927 * 17 15 14 19 19 H 1.07997 * 120.00074 * 359.97438 * 18 17 15 20 20 C 1.38817 * 119.99530 * 179.97438 * 18 17 15 21 21 N 1.31612 * 120.00447 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99594 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47137 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47560 * 119.99996 * 22 20 18 25 25 H 1.48500 * 109.47008 * 240.00282 * 22 20 18 26 26 C 1.52999 * 109.47178 * 59.99596 * 15 14 13 27 27 C 1.52997 * 109.47435 * 300.00199 * 26 15 14 28 28 H 1.09001 * 109.47446 * 269.95455 * 1 2 3 29 29 H 1.09006 * 109.47345 * 29.95782 * 1 2 3 30 30 H 1.09011 * 109.47322 * 149.95329 * 1 2 3 31 31 H 1.08001 * 125.41788 * 179.97438 * 4 3 2 32 32 H 0.97000 * 120.00115 * 0.02562 * 10 8 7 33 33 H 1.08997 * 109.46898 * 299.99920 * 13 11 10 34 34 H 1.08992 * 109.47011 * 59.99955 * 13 11 10 35 35 H 1.09004 * 109.47273 * 59.99565 * 14 13 11 36 36 H 1.08997 * 109.47271 * 180.02562 * 14 13 11 37 37 H 0.96999 * 120.00286 * 334.99179 * 17 15 14 38 38 H 0.97000 * 120.00752 * 180.02562 * 21 20 18 39 39 H 1.08999 * 109.46752 * 60.00849 * 26 15 14 40 40 H 1.08997 * 109.46801 * 180.02562 * 26 15 14 41 41 H 1.08997 * 109.46956 * 300.00147 * 27 26 15 42 42 H 1.09001 * 109.47200 * 180.02562 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7071 -0.0006 5 7 3.6121 -0.6363 -0.0015 6 1 4.4188 -1.1750 -0.0017 7 6 2.3122 -1.1042 -0.0005 8 6 1.8819 -2.5073 0.0049 9 8 0.6961 -2.7800 0.0101 10 7 2.8003 -3.4938 0.0032 11 6 2.3708 -4.8944 0.0080 12 1 1.4569 -4.9962 -0.5773 13 6 3.4686 -5.7667 -0.6044 14 6 3.0197 -7.2293 -0.5999 15 6 2.7556 -7.6773 0.8391 16 1 3.6694 -7.5758 1.4246 17 7 2.3264 -9.0780 0.8435 18 6 2.5180 -9.8493 1.9587 19 1 2.9858 -9.4251 2.8348 20 6 2.1108 -11.1764 1.9629 21 7 1.5402 -11.6932 0.8954 22 14 2.3714 -12.2284 3.4844 23 1 3.0280 -11.4170 4.5407 24 1 1.0594 -12.7172 3.9790 25 1 3.2348 -13.3873 3.1429 26 6 1.6579 -6.8050 1.4515 27 6 2.1068 -5.3424 1.4470 28 1 -0.3634 -0.0008 1.0277 29 1 -0.3634 0.8904 -0.5132 30 1 -0.3634 -0.8896 -0.5146 31 1 4.3970 1.3744 -0.0011 32 1 3.7456 -3.2764 -0.0014 33 1 3.6563 -5.4478 -1.6296 34 1 4.3823 -5.6648 -0.0191 35 1 2.1059 -7.3308 -1.1854 36 1 3.8019 -7.8507 -1.0357 37 1 1.9065 -9.4591 0.0565 38 1 1.2554 -12.6204 0.8985 39 1 0.7442 -6.9066 0.8659 40 1 1.4701 -7.1239 2.4767 41 1 3.0205 -5.2410 2.0325 42 1 1.3249 -4.7210 1.8837 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034802682.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:06 Heat of formation + Delta-G solvation = -11.440357 kcal Electronic energy + Delta-G solvation = -23057.042864 eV Core-core repulsion = 19650.257652 eV Total energy + Delta-G solvation = -3406.785212 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.20837 -40.85467 -39.18433 -36.45313 -34.93219 -34.04631 -32.64238 -31.93027 -31.70293 -29.26109 -27.93892 -25.65995 -24.17090 -23.59878 -22.76147 -21.78370 -21.24115 -20.61876 -19.74400 -19.02337 -17.38843 -17.16603 -16.83224 -16.71002 -15.91558 -15.57539 -15.42192 -15.33813 -15.15909 -14.99179 -14.55792 -14.03070 -13.92017 -13.75105 -13.47442 -13.21335 -13.10838 -13.07629 -12.86726 -12.43913 -12.32901 -12.11126 -12.04314 -11.68949 -11.50569 -11.47039 -11.22343 -11.01781 -10.92665 -10.82781 -10.18814 -9.50578 -8.99533 -7.93887 -5.21857 0.25295 1.46475 1.47397 1.56972 1.85314 1.87175 2.14243 2.24113 2.56289 3.39257 3.55150 3.69938 3.78817 3.86092 3.89160 4.13960 4.27307 4.30551 4.35780 4.38473 4.51705 4.58427 4.63125 4.71062 4.79454 4.83062 4.96028 4.98792 5.05022 5.10000 5.12560 5.24170 5.27232 5.41588 5.50970 5.54040 5.55325 5.63627 6.29234 6.34828 6.46680 6.93369 7.11017 7.34598 8.12586 8.34343 9.30067 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037434 B = 0.002722 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.797510 B =10282.756492 C =10418.013237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.075 3.925 3 N -0.539 5.539 4 C 0.243 3.757 5 N -0.538 5.538 6 H 0.441 0.559 7 C -0.106 4.106 8 C 0.592 3.408 9 O -0.562 6.562 10 N -0.706 5.706 11 C 0.154 3.846 12 H 0.068 0.932 13 C -0.104 4.104 14 C -0.114 4.114 15 C 0.172 3.828 16 H 0.048 0.952 17 N -0.740 5.740 18 C -0.234 4.234 19 H 0.075 0.925 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 0.969 3.031 23 H -0.265 1.265 24 H -0.297 1.297 25 H -0.293 1.293 26 C -0.123 4.123 27 C -0.112 4.112 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.265 0.735 32 H 0.411 0.589 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.371 0.629 38 H 0.250 0.750 39 H 0.039 0.961 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.856 25.872 -3.708 27.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.060 4.060 3 N -0.260 5.260 4 C -0.042 4.042 5 N -0.145 5.145 6 H 0.284 0.716 7 C -0.223 4.223 8 C 0.380 3.620 9 O -0.440 6.440 10 N -0.357 5.357 11 C 0.050 3.950 12 H 0.086 0.914 13 C -0.143 4.143 14 C -0.153 4.153 15 C 0.064 3.936 16 H 0.066 0.934 17 N -0.379 5.379 18 C -0.366 4.366 19 H 0.093 0.907 20 C -0.271 4.271 21 N -0.623 5.623 22 Si 0.799 3.201 23 H -0.190 1.190 24 H -0.224 1.224 25 H -0.220 1.220 26 C -0.164 4.164 27 C -0.151 4.151 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.280 0.720 32 H 0.248 0.752 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.203 0.797 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.094 0.906 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.809 26.385 -3.528 28.039 hybrid contribution 0.494 -2.156 0.576 2.286 sum 9.302 24.229 -2.953 26.120 Atomic orbital electron populations 1.20240 0.87017 1.03263 1.02935 1.21272 0.97362 0.87596 0.99742 1.70142 1.02190 1.30746 1.22887 1.26108 0.97485 0.82441 0.98159 1.43226 1.07288 1.08999 1.54972 0.71602 1.20656 0.85987 0.93942 1.21672 1.17065 0.85652 0.83412 0.75921 1.90833 1.17892 1.83490 1.51782 1.45753 1.09709 1.05447 1.74807 1.20889 0.98667 0.79255 0.96188 0.91365 1.21647 0.97709 0.92605 1.02306 1.21642 1.01361 0.96152 0.96111 1.20496 0.94722 0.82901 0.95438 0.93367 1.42690 1.72429 1.07744 1.15023 1.19656 1.30910 0.92408 0.93614 0.90670 1.25542 1.02476 0.98746 1.00366 1.69818 1.48402 1.13968 1.30068 0.85122 0.76773 0.78754 0.79451 1.18967 1.22430 1.22006 1.22032 0.99570 0.94588 1.00243 1.21760 1.01438 0.95069 0.96849 0.90844 0.90309 0.90751 0.71988 0.75233 0.89252 0.89201 0.92860 0.91349 0.79730 0.94143 0.94199 0.94138 0.90551 0.93357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.71 9.87 71.23 0.70 -1.01 16 2 C 0.07 1.68 7.15 41.96 0.30 1.98 16 3 N -0.54 -10.54 11.20 -187.59 -2.10 -12.64 16 4 C 0.24 2.34 13.01 180.33 2.35 4.68 16 5 N -0.54 -4.90 6.07 -188.04 -1.14 -6.04 16 6 H 0.44 0.35 8.32 -92.71 -0.77 -0.42 16 7 C -0.11 -2.05 7.08 40.01 0.28 -1.77 16 8 C 0.59 13.85 7.76 86.47 0.67 14.52 16 9 O -0.56 -18.01 14.49 -4.29 -0.06 -18.07 16 10 N -0.71 -12.37 5.07 -446.41 -2.27 -14.64 16 11 C 0.15 3.57 2.45 44.99 0.11 3.68 16 12 H 0.07 1.96 7.58 -2.39 -0.02 1.94 16 13 C -0.10 -2.06 5.39 30.59 0.16 -1.90 16 14 C -0.11 -3.35 5.39 30.60 0.16 -3.18 16 15 C 0.17 6.48 2.77 44.99 0.12 6.60 16 16 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 17 N -0.74 -37.02 5.12 -322.93 -1.65 -38.68 16 18 C -0.23 -12.93 9.93 84.03 0.83 -12.10 16 19 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 20 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 21 N -0.97 -59.97 13.06 21.65 0.28 -59.69 16 22 Si 0.97 46.36 29.55 68.60 2.03 48.38 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 26 C -0.12 -4.44 5.50 30.59 0.17 -4.27 16 27 C -0.11 -3.07 5.50 30.59 0.17 -2.91 16 28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.07 1.87 6.49 -2.38 -0.02 1.86 16 31 H 0.26 -0.41 8.06 -2.91 -0.02 -0.43 16 32 H 0.41 3.79 7.85 -92.71 -0.73 3.06 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.37 20.12 7.80 -92.71 -0.72 19.40 16 38 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 39 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 41 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -78.30 344.90 0.42 -77.87 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: -1.16 Total: 23.27 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 6.50 Total: 0.23 kcal Atomic # 7 Polarization: -124.80 SS G_CDS: -6.88 Total: -131.69 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.06 Total: -18.07 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -78.30 0.42 -77.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034802682.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.432 kcal (2) G-P(sol) polarization free energy of solvation -78.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds