Wall clock time and date at job start Tue Mar 31 2020 02:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47290 * 2 1 4 4 C 1.50698 * 109.47151 * 180.02562 * 3 2 1 5 5 C 1.35372 * 126.38301 * 84.99830 * 4 3 2 6 6 C 1.41501 * 105.50170 * 179.97438 * 5 4 3 7 7 C 1.47707 * 126.52032 * 180.02562 * 6 5 4 8 8 O 1.21572 * 119.99988 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00050 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99668 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46966 * 180.02562 * 10 9 7 12 12 H 1.09001 * 112.77951 * 56.27255 * 11 10 9 13 13 C 1.53492 * 113.46722 * 187.05955 * 11 10 9 14 14 C 1.53503 * 83.34380 * 140.84700 * 13 11 10 15 15 N 1.47066 * 113.46558 * 285.49627 * 11 10 9 16 16 C 1.36937 * 136.06113 * 37.83696 * 15 11 10 17 17 H 1.07995 * 120.00001 * 0.02562 * 16 15 11 18 18 C 1.38817 * 120.00320 * 179.97438 * 16 15 11 19 19 N 1.31620 * 119.99557 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99975 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47363 * 60.00463 * 20 18 16 22 22 H 1.48506 * 109.46719 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47174 * 300.00290 * 20 18 16 24 24 N 1.31815 * 106.96510 * 0.26385 * 6 5 4 25 25 N 1.28477 * 110.06928 * 359.55695 * 24 6 5 26 26 H 0.96999 * 124.88410 * 180.15752 * 25 24 6 27 27 H 1.08999 * 109.47228 * 59.99484 * 1 2 3 28 28 H 1.09000 * 109.47698 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46845 * 299.99634 * 1 2 3 30 30 H 1.09003 * 109.46845 * 240.00366 * 2 1 3 31 31 H 1.08999 * 109.47228 * 120.00516 * 2 1 3 32 32 H 1.08997 * 109.47174 * 60.00062 * 3 2 1 33 33 H 1.08998 * 109.46906 * 300.00241 * 3 2 1 34 34 H 1.07995 * 127.24814 * 359.97438 * 5 4 3 35 35 H 0.96999 * 119.99977 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.47023 * 59.99980 * 10 9 7 37 37 H 1.09003 * 109.47215 * 299.99892 * 10 9 7 38 38 H 1.08996 * 114.20649 * 254.43356 * 13 11 10 39 39 H 1.08998 * 114.21061 * 27.06495 * 13 11 10 40 40 H 1.09003 * 113.46532 * 219.15331 * 14 13 11 41 41 H 1.09000 * 113.46688 * 88.71677 * 14 13 11 42 42 H 0.96999 * 119.99537 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3495 1.3476 -1.0867 6 6 5.6718 1.3921 -0.5848 7 6 6.9159 1.3235 -1.3782 8 8 6.8602 1.2185 -2.5881 9 7 8.1127 1.3785 -0.7609 10 6 9.3465 1.3111 -1.5479 11 6 10.5538 1.3933 -0.6115 12 1 10.5446 0.6211 0.1577 13 6 11.8944 1.5038 -1.3509 14 6 12.2343 2.4831 -0.2187 15 7 10.7935 2.7443 -0.0822 16 6 10.0168 3.7884 0.3443 17 1 8.9405 3.7018 0.3300 18 6 10.6131 4.9578 0.7959 19 7 11.9249 5.0632 0.8138 20 14 9.5536 6.3817 1.3784 21 1 8.7169 5.9404 2.5231 22 1 10.4257 7.5050 1.8061 23 1 8.6758 6.8321 0.2684 24 7 5.5823 1.5011 0.7257 25 7 4.3485 1.5376 1.0819 26 1 4.0374 1.6173 1.9972 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 4.0447 1.2570 -2.1188 35 1 8.1571 1.4635 0.2044 36 1 9.3746 2.1432 -2.2515 37 1 9.3764 0.3699 -2.0968 38 1 12.4860 0.5885 -1.3427 39 1 11.8245 1.9628 -2.3370 40 1 12.8032 3.3512 -0.5519 41 1 12.6728 2.0011 0.6550 42 1 12.3415 5.8805 1.1290 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038571530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:47 Heat of formation + Delta-G solvation = 79.530679 kcal Electronic energy + Delta-G solvation = -22956.095860 eV Core-core repulsion = 19553.255448 eV Total energy + Delta-G solvation = -3402.840411 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.68372 -39.10417 -37.93086 -35.65487 -33.96402 -32.19461 -31.83574 -31.09806 -28.08895 -27.67757 -26.66379 -23.86750 -23.42289 -22.26710 -21.58313 -21.06921 -19.81523 -19.07619 -17.77284 -17.02817 -16.30666 -15.79024 -15.50704 -15.36537 -15.11214 -14.35753 -14.20116 -13.99227 -13.75662 -13.63982 -13.37540 -13.10296 -12.80764 -12.55084 -11.89886 -11.80759 -11.67141 -11.48375 -11.15848 -11.06563 -10.93648 -10.77495 -10.73156 -10.54939 -10.03017 -9.79532 -9.73388 -9.36929 -9.17970 -9.00528 -8.76833 -8.46607 -6.85712 -5.72678 -3.04701 1.69949 2.09825 2.80708 3.41417 3.45710 3.46656 3.59473 3.74884 4.34119 4.46998 4.48191 4.62824 4.67713 4.97253 5.07027 5.23297 5.32201 5.40508 5.40705 5.45753 5.57023 5.62126 5.66812 5.68145 5.80923 5.88371 5.93289 5.97316 6.15533 6.34368 6.40183 6.45245 6.64504 6.77315 6.90632 6.98137 7.27453 7.43664 7.62294 7.77547 8.02212 8.08720 8.62022 9.08156 9.74685 10.67238 11.44712 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017564 B = 0.003777 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.747654 B = 7412.197142 C = 8604.751603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.049 4.049 4 C 0.010 3.990 5 C -0.176 4.176 6 C -0.004 4.004 7 C 0.597 3.403 8 O -0.545 6.545 9 N -0.698 5.698 10 C 0.121 3.879 11 C 0.127 3.873 12 H 0.049 0.951 13 C -0.161 4.161 14 C 0.152 3.848 15 N -0.601 5.601 16 C -0.211 4.211 17 H 0.081 0.919 18 C -0.008 4.008 19 N -0.920 5.920 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 N -0.253 5.253 25 N -0.381 5.381 26 H 0.443 0.557 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.161 0.839 35 H 0.409 0.591 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.025 0.975 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.126 -10.600 -0.157 20.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.088 4.088 4 C -0.115 4.115 5 C -0.204 4.204 6 C -0.165 4.165 7 C 0.381 3.619 8 O -0.422 6.422 9 N -0.348 5.348 10 C -0.004 4.004 11 C 0.019 3.981 12 H 0.066 0.934 13 C -0.200 4.200 14 C 0.026 3.974 15 N -0.327 5.327 16 C -0.338 4.338 17 H 0.098 0.902 18 C -0.204 4.204 19 N -0.568 5.568 20 Si 0.739 3.261 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.212 1.212 24 N -0.088 5.088 25 N -0.095 5.095 26 H 0.287 0.713 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.178 0.822 35 H 0.245 0.755 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.043 0.957 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -17.500 -10.235 0.030 20.274 hybrid contribution -1.141 0.901 0.845 1.681 sum -18.642 -9.334 0.874 20.866 Atomic orbital electron populations 1.21781 0.95294 1.01969 1.01994 1.21546 0.95909 0.95576 1.02888 1.20201 0.86416 0.98187 1.04009 1.21391 0.94907 1.07761 0.87478 1.21483 0.90488 1.08765 0.99660 1.22070 0.95436 1.09231 0.89813 1.16894 0.81824 0.76917 0.86284 1.90753 1.86948 1.51289 1.13163 1.45848 1.05114 1.72024 1.11825 1.21866 0.82575 1.01195 0.94733 1.22423 0.92132 0.90015 0.93505 0.93389 1.23665 0.96663 0.99824 0.99822 1.22027 0.87779 0.95309 0.92283 1.45668 1.02631 1.08999 1.75424 1.18844 0.89114 0.90305 1.35539 0.90169 1.24753 0.95769 0.97998 1.01897 1.69819 1.07566 1.27034 1.52340 0.86257 0.79132 0.82140 0.78616 1.21287 1.21576 1.21154 1.73655 1.01266 1.18652 1.15252 1.43321 1.03009 1.53429 1.09789 0.71327 0.92387 0.92476 0.92700 0.91117 0.91995 0.90671 0.89055 0.82187 0.75509 0.90870 0.92043 0.92343 0.90155 0.90982 0.95741 0.93700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.15 0.37 -0.40 16 2 C -0.12 -0.75 5.92 -26.73 -0.16 -0.91 16 3 C -0.05 -0.33 5.77 -27.88 -0.16 -0.49 16 4 C 0.01 0.11 6.48 -82.21 -0.53 -0.42 16 5 C -0.18 -2.41 10.73 -39.36 -0.42 -2.83 16 6 C 0.00 -0.07 7.13 -82.76 -0.59 -0.66 16 7 C 0.60 11.46 7.82 -12.39 -0.10 11.37 16 8 O -0.55 -11.63 16.93 5.30 0.09 -11.54 16 9 N -0.70 -13.30 5.33 -61.29 -0.33 -13.62 16 10 C 0.12 2.31 5.52 -4.04 -0.02 2.29 16 11 C 0.13 2.55 4.10 -72.40 -0.30 2.25 16 12 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 13 C -0.16 -3.00 8.03 -26.22 -0.21 -3.21 16 14 C 0.15 3.55 7.39 -8.50 -0.06 3.48 16 15 N -0.60 -15.13 3.65 -176.99 -0.65 -15.78 16 16 C -0.21 -5.85 10.55 -15.06 -0.16 -6.01 16 17 H 0.08 2.18 7.51 -52.49 -0.39 1.79 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 19 N -0.92 -27.57 11.51 55.49 0.64 -26.93 16 20 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 24 N -0.25 -3.87 11.92 33.42 0.40 -3.47 16 25 N -0.38 -4.26 6.83 33.50 0.23 -4.03 16 26 H 0.44 3.29 8.96 -190.44 -1.71 1.59 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.16 2.02 8.06 -52.49 -0.42 1.60 16 35 H 0.41 7.82 8.10 -40.82 -0.33 7.49 16 36 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 1.48 8.12 -51.93 -0.42 1.06 16 40 H 0.07 1.87 7.13 -51.93 -0.37 1.50 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 355.79 15.07 5.36 5.36 Total: -1.00 -34.14 355.79 -9.57 -43.71 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -7.85 Total: 4.51 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -2.44 Total: 4.12 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: 0.29 Total: -63.83 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.14 -9.57 -43.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038571530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.242 kcal (2) G-P(sol) polarization free energy of solvation -34.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds