Wall clock time and date at job start Tue Mar 31 2020 02:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47290 * 2 1 4 4 C 1.50698 * 109.47151 * 180.02562 * 3 2 1 5 5 C 1.35372 * 126.38301 * 84.99830 * 4 3 2 6 6 C 1.41501 * 105.50170 * 179.97438 * 5 4 3 7 7 C 1.47707 * 126.52032 * 180.02562 * 6 5 4 8 8 O 1.21572 * 119.99988 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00050 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99668 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46966 * 180.02562 * 10 9 7 12 12 H 1.09001 * 112.77951 * 56.27255 * 11 10 9 13 13 C 1.53492 * 113.46722 * 187.05955 * 11 10 9 14 14 C 1.53503 * 83.34380 * 140.84700 * 13 11 10 15 15 N 1.47066 * 113.46558 * 285.49627 * 11 10 9 16 16 C 1.36937 * 136.06113 * 37.83696 * 15 11 10 17 17 H 1.07995 * 120.00001 * 0.02562 * 16 15 11 18 18 C 1.38817 * 120.00320 * 179.97438 * 16 15 11 19 19 N 1.31620 * 119.99557 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99975 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47363 * 60.00463 * 20 18 16 22 22 H 1.48506 * 109.46719 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47174 * 300.00290 * 20 18 16 24 24 N 1.31815 * 106.96510 * 0.26385 * 6 5 4 25 25 N 1.28477 * 110.06928 * 359.55695 * 24 6 5 26 26 H 0.96999 * 124.88410 * 180.15752 * 25 24 6 27 27 H 1.08999 * 109.47228 * 59.99484 * 1 2 3 28 28 H 1.09000 * 109.47698 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46845 * 299.99634 * 1 2 3 30 30 H 1.09003 * 109.46845 * 240.00366 * 2 1 3 31 31 H 1.08999 * 109.47228 * 120.00516 * 2 1 3 32 32 H 1.08997 * 109.47174 * 60.00062 * 3 2 1 33 33 H 1.08998 * 109.46906 * 300.00241 * 3 2 1 34 34 H 1.07995 * 127.24814 * 359.97438 * 5 4 3 35 35 H 0.96999 * 119.99977 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.47023 * 59.99980 * 10 9 7 37 37 H 1.09003 * 109.47215 * 299.99892 * 10 9 7 38 38 H 1.08996 * 114.20649 * 254.43356 * 13 11 10 39 39 H 1.08998 * 114.21061 * 27.06495 * 13 11 10 40 40 H 1.09003 * 113.46532 * 219.15331 * 14 13 11 41 41 H 1.09000 * 113.46688 * 88.71677 * 14 13 11 42 42 H 0.96999 * 119.99537 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3495 1.3476 -1.0867 6 6 5.6718 1.3921 -0.5848 7 6 6.9159 1.3235 -1.3782 8 8 6.8602 1.2185 -2.5881 9 7 8.1127 1.3785 -0.7609 10 6 9.3465 1.3111 -1.5479 11 6 10.5538 1.3933 -0.6115 12 1 10.5446 0.6211 0.1577 13 6 11.8944 1.5038 -1.3509 14 6 12.2343 2.4831 -0.2187 15 7 10.7935 2.7443 -0.0822 16 6 10.0168 3.7884 0.3443 17 1 8.9405 3.7018 0.3300 18 6 10.6131 4.9578 0.7959 19 7 11.9249 5.0632 0.8138 20 14 9.5536 6.3817 1.3784 21 1 8.7169 5.9404 2.5231 22 1 10.4257 7.5050 1.8061 23 1 8.6758 6.8321 0.2684 24 7 5.5823 1.5011 0.7257 25 7 4.3485 1.5376 1.0819 26 1 4.0374 1.6173 1.9972 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 4.0447 1.2570 -2.1188 35 1 8.1571 1.4635 0.2044 36 1 9.3746 2.1432 -2.2515 37 1 9.3764 0.3699 -2.0968 38 1 12.4860 0.5885 -1.3427 39 1 11.8245 1.9628 -2.3370 40 1 12.8032 3.3512 -0.5519 41 1 12.6728 2.0011 0.6550 42 1 12.3415 5.8805 1.1290 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038571530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:47 Heat of formation + Delta-G solvation = 55.507305 kcal Electronic energy + Delta-G solvation = -22957.137592 eV Core-core repulsion = 19553.255448 eV Total energy + Delta-G solvation = -3403.882143 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.72238 -40.67148 -39.61883 -36.24775 -35.52765 -34.25425 -32.96664 -31.91311 -29.98739 -29.29591 -27.36426 -25.39943 -25.25000 -23.23242 -22.82111 -21.93985 -21.33713 -20.76070 -18.73483 -18.70257 -17.84781 -17.16061 -16.96127 -16.76864 -16.03362 -15.90853 -15.63507 -15.54124 -14.88359 -14.77437 -14.64891 -14.44082 -13.94334 -13.62830 -13.33463 -13.05156 -12.96602 -12.71556 -12.60967 -12.46416 -12.35206 -12.12298 -11.90973 -11.87001 -11.65281 -11.53476 -11.40657 -10.94411 -10.83018 -10.50871 -10.00100 -9.96441 -8.89364 -7.88234 -5.19447 0.49251 1.09113 1.40497 1.43513 1.49341 1.86623 2.24925 2.36930 2.46685 3.32213 3.35793 3.47876 3.64385 3.90739 3.97493 4.10853 4.17598 4.27965 4.34615 4.45864 4.53957 4.64391 4.69247 4.70726 4.85016 4.89484 4.94236 4.99554 5.06681 5.09377 5.23380 5.30861 5.32732 5.35517 5.41995 5.48441 5.58987 5.74738 5.97476 6.09111 6.45807 6.84936 6.94401 7.14404 7.63452 8.63501 9.29263 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017564 B = 0.003777 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.747654 B = 7412.197142 C = 8604.751603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.046 4.046 4 C 0.038 3.962 5 C -0.197 4.197 6 C -0.036 4.036 7 C 0.594 3.406 8 O -0.574 6.574 9 N -0.700 5.700 10 C 0.128 3.872 11 C 0.132 3.868 12 H 0.067 0.933 13 C -0.132 4.132 14 C 0.143 3.857 15 N -0.630 5.630 16 C -0.206 4.206 17 H 0.080 0.920 18 C -0.069 4.069 19 N -0.953 5.953 20 Si 0.967 3.033 21 H -0.277 1.277 22 H -0.293 1.293 23 H -0.285 1.285 24 N -0.274 5.274 25 N -0.364 5.364 26 H 0.460 0.540 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.164 0.836 35 H 0.409 0.591 36 H 0.046 0.954 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.023 0.977 42 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.483 -11.652 0.405 23.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.085 4.085 4 C -0.089 4.089 5 C -0.226 4.226 6 C -0.195 4.195 7 C 0.380 3.620 8 O -0.453 6.453 9 N -0.349 5.349 10 C 0.004 3.996 11 C 0.025 3.975 12 H 0.085 0.915 13 C -0.170 4.170 14 C 0.018 3.982 15 N -0.357 5.357 16 C -0.335 4.335 17 H 0.098 0.902 18 C -0.262 4.262 19 N -0.603 5.603 20 Si 0.796 3.204 21 H -0.203 1.203 22 H -0.219 1.219 23 H -0.212 1.212 24 N -0.111 5.111 25 N -0.081 5.081 26 H 0.308 0.692 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.182 0.818 35 H 0.244 0.756 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.120 0.880 39 H 0.100 0.900 40 H 0.056 0.944 41 H 0.041 0.959 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -19.873 -11.323 0.608 22.881 hybrid contribution -0.491 1.145 0.688 1.422 sum -20.364 -10.179 1.295 22.803 Atomic orbital electron populations 1.21759 0.94122 1.02286 1.02629 1.21510 0.96843 0.94920 1.02400 1.20391 0.83267 0.99020 1.05811 1.21862 0.96430 1.04485 0.86081 1.21677 0.89831 1.10119 1.00923 1.21849 0.95296 1.11869 0.90535 1.17260 0.82554 0.75991 0.86207 1.90717 1.87491 1.52713 1.14406 1.45857 1.05248 1.72090 1.11685 1.21720 0.82499 1.01276 0.94119 1.22581 0.93271 0.87825 0.93792 0.91543 1.23479 0.95617 1.00013 0.97921 1.22056 0.86730 0.95351 0.94096 1.45996 1.03576 1.10643 1.75441 1.19116 0.89520 0.91160 1.33697 0.90210 1.25499 0.96879 1.00510 1.03317 1.69995 1.08931 1.27226 1.54135 0.85317 0.77592 0.79274 0.78204 1.20307 1.21900 1.21151 1.73565 1.03284 1.19534 1.14702 1.43422 1.02043 1.51595 1.11001 0.69221 0.92058 0.92390 0.91770 0.92211 0.92008 0.88141 0.87999 0.81816 0.75597 0.93524 0.89660 0.87995 0.90015 0.94438 0.95908 0.94483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 71.98 0.71 -0.37 16 2 C -0.12 -1.16 5.92 30.59 0.18 -0.98 16 3 C -0.05 -0.47 5.77 29.85 0.17 -0.30 16 4 C 0.04 0.72 6.48 41.40 0.27 0.99 16 5 C -0.20 -5.24 10.73 22.41 0.24 -5.00 16 6 C -0.04 -1.19 7.13 42.45 0.30 -0.89 16 7 C 0.59 23.00 7.82 86.75 0.68 23.68 16 8 O -0.57 -24.84 16.93 -3.94 -0.07 -24.91 16 9 N -0.70 -26.57 5.33 -466.08 -2.48 -29.05 16 10 C 0.13 4.82 5.52 86.38 0.48 5.29 16 11 C 0.13 5.10 4.10 41.79 0.17 5.27 16 12 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 13 C -0.13 -4.66 8.03 30.93 0.25 -4.41 16 14 C 0.14 6.73 7.39 83.18 0.61 7.34 16 15 N -0.63 -31.83 3.65 -713.88 -2.61 -34.43 16 16 C -0.21 -11.60 10.55 84.03 0.89 -10.71 16 17 H 0.08 4.38 7.51 -2.91 -0.02 4.35 16 18 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 19 N -0.95 -58.61 11.51 21.65 0.25 -58.36 16 20 Si 0.97 47.33 29.55 68.60 2.03 49.36 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 23 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 24 N -0.27 -8.12 11.92 -48.18 -0.57 -8.69 16 25 N -0.36 -7.36 6.83 -47.93 -0.33 -7.68 16 26 H 0.46 5.56 8.96 -219.99 -1.97 3.59 16 27 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.16 4.08 8.06 -2.91 -0.02 4.05 16 35 H 0.41 15.57 8.10 -92.71 -0.75 14.82 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.09 2.80 8.14 -2.39 -0.02 2.79 16 38 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 39 H 0.08 2.89 8.12 -2.39 -0.02 2.87 16 40 H 0.04 2.00 7.13 -2.39 -0.02 1.99 16 41 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -75.74 355.79 -0.05 -75.79 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: -1.69 Total: 21.65 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 5.42 Total: 16.34 kcal Atomic # 7 Polarization: -132.48 SS G_CDS: -5.74 Total: -138.22 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.07 Total: -24.91 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -75.74 -0.05 -75.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038571530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.294 kcal (2) G-P(sol) polarization free energy of solvation -75.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds