Wall clock time and date at job start Tue Mar 31 2020 02:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47069 * 2 1 4 4 C 1.39680 * 126.06778 * 125.00393 * 3 2 1 5 5 C 1.38404 * 105.36078 * 179.97438 * 4 3 2 6 6 C 1.47159 * 126.88703 * 179.97438 * 5 4 3 7 7 O 1.21631 * 120.00166 * 184.99759 * 6 5 4 8 8 N 1.34778 * 119.99587 * 4.99510 * 6 5 4 9 9 C 1.46505 * 119.99785 * 185.09414 * 8 6 5 10 10 C 1.52999 * 109.47284 * 180.02562 * 9 8 6 11 11 H 1.09000 * 112.73812 * 303.76183 * 10 9 8 12 12 C 1.53487 * 113.46935 * 172.94132 * 10 9 8 13 13 C 1.53499 * 83.34380 * 219.15265 * 12 10 9 14 14 N 1.47062 * 87.98726 * 26.06632 * 13 12 10 15 15 C 1.36934 * 136.05761 * 152.90925 * 14 13 12 16 16 H 1.08000 * 120.00158 * 179.97438 * 15 14 13 17 17 C 1.38815 * 120.00097 * 359.96058 * 15 14 13 18 18 N 1.31621 * 119.99674 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00128 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47432 * 89.99329 * 19 17 15 21 21 H 1.48501 * 109.47205 * 210.00037 * 19 17 15 22 22 H 1.48510 * 109.47103 * 329.99675 * 19 17 15 23 23 N 1.36608 * 106.22880 * 359.97438 * 5 4 3 24 24 C 1.46498 * 125.18767 * 179.97438 * 23 5 4 25 25 N 1.28440 * 109.61933 * 0.26560 * 23 5 4 26 26 H 1.08993 * 109.47329 * 59.99588 * 1 2 3 27 27 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46359 * 299.99978 * 1 2 3 29 29 H 1.08999 * 109.46957 * 239.99949 * 2 1 3 30 30 H 1.09003 * 109.46894 * 120.00120 * 2 1 3 31 31 H 1.07996 * 127.31976 * 359.95833 * 4 3 2 32 32 H 0.96996 * 120.00031 * 5.10376 * 8 6 5 33 33 H 1.09005 * 109.46729 * 300.00440 * 9 8 6 34 34 H 1.08997 * 109.47239 * 59.99737 * 9 8 6 35 35 H 1.09002 * 114.20505 * 332.73619 * 12 10 9 36 36 H 1.09001 * 114.21129 * 105.56690 * 12 10 9 37 37 H 1.09006 * 113.46478 * 271.28533 * 13 12 10 38 38 H 1.09001 * 113.46673 * 140.84945 * 13 12 10 39 39 H 0.97002 * 119.99369 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.47226 * 84.45227 * 24 23 5 41 41 H 1.09002 * 109.47319 * 204.45544 * 24 23 5 42 42 H 1.08998 * 109.47210 * 324.45590 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9171 1.9802 0.9248 5 6 3.0844 3.2942 0.5236 6 6 3.9248 4.3149 1.1698 7 8 3.9101 5.4612 0.7633 8 7 4.7108 3.9794 2.2120 9 6 5.4619 5.0149 2.9261 10 6 6.2682 4.3721 4.0564 11 1 5.6462 3.8013 4.7459 12 6 7.2232 5.3480 4.7575 13 6 8.1667 4.1373 4.7680 14 7 7.4503 3.6342 3.5863 15 6 7.7514 2.8316 2.5185 16 1 7.0001 2.6225 1.7713 17 6 9.0222 2.2867 2.3962 18 7 9.9381 2.5421 3.3064 19 14 9.4327 1.1912 0.9399 20 1 9.9524 2.0234 -0.1747 21 1 10.4639 0.2007 1.3408 22 1 8.2078 0.4784 0.4960 23 7 2.3130 3.4538 -0.5924 24 6 2.1834 4.6957 -1.3586 25 7 1.7139 2.3506 -0.8640 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.3734 1.4914 1.7729 32 1 4.7792 3.0524 2.4892 33 1 6.1405 5.5138 2.2342 34 1 4.7679 5.7444 3.3437 35 1 7.5607 6.1721 4.1290 36 1 6.8918 5.6649 5.7464 37 1 8.0509 3.5043 5.6479 38 1 9.2066 4.3956 4.5679 39 1 10.8263 2.1617 3.2207 40 1 3.0040 4.7698 -2.0721 41 1 1.2345 4.6945 -1.8950 42 1 2.2152 5.5471 -0.6787 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038847938.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:48 Heat of formation + Delta-G solvation = 70.856062 kcal Electronic energy + Delta-G solvation = -23483.406829 eV Core-core repulsion = 20080.190257 eV Total energy + Delta-G solvation = -3403.216571 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.59776 -40.70269 -39.63097 -36.00444 -35.42880 -34.24783 -32.79865 -32.01052 -29.94608 -29.10252 -27.82737 -25.37671 -24.68378 -24.31779 -23.25215 -21.88611 -21.12811 -20.37769 -18.96011 -18.31790 -17.45296 -17.31500 -17.01335 -16.75228 -16.04607 -15.72568 -15.57153 -15.17900 -14.96812 -14.86193 -14.67961 -14.53717 -13.80794 -13.63574 -13.43891 -13.33609 -13.01877 -12.96076 -12.72288 -12.59236 -12.35341 -12.29753 -12.18269 -11.85075 -11.62291 -11.53242 -11.35463 -10.93959 -10.82434 -10.34199 -9.98010 -9.87068 -8.87398 -7.86738 -5.17715 0.16427 1.35372 1.43679 1.45149 1.50802 1.52157 2.10155 2.20855 2.47440 3.34939 3.39646 3.46254 3.54949 3.91383 3.96804 4.14347 4.24453 4.26075 4.29753 4.37007 4.46875 4.52306 4.58525 4.63788 4.71011 4.75789 4.84561 4.90199 5.08506 5.11285 5.11782 5.23437 5.33261 5.35477 5.38466 5.50129 5.61069 5.75093 5.76689 5.98932 6.38407 6.94740 6.97365 7.06014 7.65678 8.65079 9.30804 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013882 B = 0.004636 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.447838 B = 6037.790739 C = 6996.549887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.038 4.038 3 C 0.019 3.981 4 C -0.183 4.183 5 C -0.054 4.054 6 C 0.587 3.413 7 O -0.575 6.575 8 N -0.693 5.693 9 C 0.131 3.869 10 C 0.133 3.867 11 H 0.073 0.927 12 C -0.133 4.133 13 C 0.142 3.858 14 N -0.629 5.629 15 C -0.204 4.204 16 H 0.085 0.915 17 C -0.067 4.067 18 N -0.952 5.952 19 Si 0.962 3.038 20 H -0.296 1.296 21 H -0.296 1.296 22 H -0.267 1.267 23 N -0.266 5.266 24 C 0.084 3.916 25 N -0.289 5.289 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.178 0.822 32 H 0.410 0.590 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.024 0.976 38 H 0.035 0.965 39 H 0.245 0.755 40 H 0.086 0.914 41 H 0.116 0.884 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.075 -0.128 -2.644 18.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.077 4.077 3 C -0.137 4.137 4 C -0.212 4.212 5 C -0.182 4.182 6 C 0.373 3.627 7 O -0.456 6.456 8 N -0.342 5.342 9 C 0.007 3.993 10 C 0.027 3.973 11 H 0.090 0.910 12 C -0.172 4.172 13 C 0.016 3.984 14 N -0.355 5.355 15 C -0.333 4.333 16 H 0.103 0.897 17 C -0.260 4.260 18 N -0.602 5.602 19 Si 0.791 3.209 20 H -0.223 1.223 21 H -0.222 1.222 22 H -0.192 1.192 23 N -0.054 5.054 24 C -0.055 4.055 25 N -0.123 5.123 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.118 0.882 31 H 0.195 0.805 32 H 0.247 0.753 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.119 0.881 37 H 0.041 0.959 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.105 0.895 41 H 0.134 0.866 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.541 0.839 -4.154 19.019 hybrid contribution 1.459 -1.094 0.026 1.824 sum -17.083 -0.255 -4.129 17.576 Atomic orbital electron populations 1.21664 0.93881 1.02660 1.01563 1.20040 0.96704 0.86615 1.04308 1.22515 0.99777 0.97740 0.93691 1.22496 1.03226 0.91916 1.03610 1.21440 1.04219 0.97137 0.95423 1.17072 0.79359 0.86245 0.80002 1.90729 1.68579 1.21460 1.64823 1.45632 1.44455 1.12678 1.31477 1.21738 0.93860 0.90081 0.93615 1.22592 0.89701 0.92002 0.93026 0.90976 1.23481 0.96491 0.96159 1.01050 1.22057 0.96709 0.91356 0.88261 1.45990 1.10078 1.56972 1.22479 1.19159 0.95841 1.19944 0.98331 0.89702 1.25451 0.96685 1.03046 1.00841 1.69998 1.03761 1.49799 1.36623 0.85320 0.77830 0.78528 0.79198 1.22327 1.22229 1.19187 1.45790 1.30120 1.10197 1.19259 1.22447 1.05443 0.80788 0.96796 1.73050 1.20245 0.93078 1.25931 0.93344 0.90282 0.93197 0.89924 0.88204 0.80474 0.75340 0.93457 0.89466 0.90203 0.88067 0.95856 0.94680 0.94611 0.89513 0.86554 0.88071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.87 71.98 0.71 -1.52 16 2 C -0.04 -0.69 6.51 29.85 0.19 -0.49 16 3 C 0.02 0.48 6.49 43.05 0.28 0.76 16 4 C -0.18 -4.90 10.42 22.66 0.24 -4.66 16 5 C -0.05 -1.64 6.96 40.78 0.28 -1.36 16 6 C 0.59 19.65 7.79 86.59 0.67 20.32 16 7 O -0.57 -21.48 14.80 -4.13 -0.06 -21.54 16 8 N -0.69 -22.23 5.31 -466.62 -2.48 -24.71 16 9 C 0.13 4.31 5.53 86.38 0.48 4.79 16 10 C 0.13 4.60 4.10 41.78 0.17 4.78 16 11 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 12 C -0.13 -4.33 8.03 30.93 0.25 -4.08 16 13 C 0.14 6.28 7.39 83.18 0.61 6.89 16 14 N -0.63 -29.43 3.65 -713.95 -2.61 -32.04 16 15 C -0.20 -10.73 10.55 84.03 0.89 -9.84 16 16 H 0.09 4.26 7.50 -2.91 -0.02 4.24 16 17 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 18 N -0.95 -56.64 11.51 21.65 0.25 -56.39 16 19 Si 0.96 45.57 29.55 68.60 2.03 47.60 16 20 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 21 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 N -0.27 -7.63 3.75 -356.02 -1.33 -8.96 16 24 C 0.08 1.89 10.71 127.77 1.37 3.26 16 25 N -0.29 -8.14 11.87 -47.49 -0.56 -8.70 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 28 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.10 1.46 8.12 -2.39 -0.02 1.44 16 31 H 0.18 3.93 7.62 -2.91 -0.02 3.91 16 32 H 0.41 12.54 7.45 -92.71 -0.69 11.85 16 33 H 0.05 1.83 8.14 -2.38 -0.02 1.82 16 34 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.08 2.63 8.12 -2.39 -0.02 2.61 16 36 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.03 1.80 7.12 -2.39 -0.02 1.78 16 39 H 0.24 14.34 8.31 -92.71 -0.77 13.57 16 40 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.10 2.41 6.54 -2.39 -0.02 2.39 16 Total: -1.00 -69.91 351.98 2.18 -67.73 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.33 Total: 21.44 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 6.61 Total: 15.56 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -6.74 Total: -130.79 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.06 Total: -21.54 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -69.91 2.18 -67.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038847938.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.588 kcal (2) G-P(sol) polarization free energy of solvation -69.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds