Wall clock time and date at job start Tue Mar 31 2020 03:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47240 * 2 1 4 4 C 1.50697 * 109.47185 * 240.00242 * 2 1 3 5 5 O 1.21290 * 120.00131 * 240.00281 * 4 2 1 6 6 N 1.34774 * 119.99991 * 59.99642 * 4 2 1 7 7 C 1.46502 * 120.00068 * 0.02562 * 6 4 2 8 8 C 1.46498 * 120.00146 * 180.02562 * 6 4 2 9 9 C 1.53496 * 114.21138 * 119.99825 * 8 6 4 10 10 N 1.47070 * 87.98076 * 87.71671 * 9 8 6 11 11 C 1.36941 * 136.05440 * 207.08124 * 10 9 8 12 12 H 1.07997 * 120.00412 * 7.86028 * 11 10 9 13 13 C 1.38814 * 119.99634 * 187.85423 * 11 10 9 14 14 N 1.31616 * 119.99939 * 173.06607 * 13 11 10 15 15 Si 1.86796 * 120.00336 * 353.06587 * 13 11 10 16 16 H 1.48499 * 109.47209 * 175.20930 * 15 13 11 17 17 H 1.48510 * 109.47106 * 295.21158 * 15 13 11 18 18 H 1.48503 * 109.47106 * 55.20691 * 15 13 11 19 19 C 1.47063 * 87.88519 * 27.34830 * 10 9 8 20 20 C 1.50707 * 109.47265 * 120.00120 * 2 1 3 21 21 C 1.35316 * 126.12636 * 85.02250 * 20 2 1 22 22 C 1.39865 * 107.91952 * 179.97438 * 21 20 2 23 23 N 1.30838 * 108.20436 * 0.02562 * 22 21 20 24 24 N 1.34947 * 126.12647 * 264.71466 * 20 2 1 25 25 C 1.46498 * 126.03706 * 0.03775 * 24 20 2 26 26 H 1.09004 * 109.46945 * 299.99596 * 1 2 3 27 27 H 1.08995 * 109.47402 * 59.99658 * 1 2 3 28 28 H 1.09001 * 109.47240 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47136 * 270.00131 * 7 6 4 30 30 H 1.08998 * 109.46845 * 29.99973 * 7 6 4 31 31 H 1.09001 * 109.46872 * 149.99989 * 7 6 4 32 32 H 1.09007 * 113.27923 * 346.93027 * 8 6 4 33 33 H 1.09000 * 113.46265 * 332.94223 * 9 8 6 34 34 H 1.09000 * 113.46978 * 202.49518 * 9 8 6 35 35 H 0.97007 * 119.99810 * 1.51422 * 14 13 11 36 36 H 1.08997 * 113.47359 * 87.43609 * 19 10 9 37 37 H 1.09003 * 113.46485 * 217.88067 * 19 10 9 38 38 H 1.07998 * 126.03673 * 359.94606 * 21 20 2 39 39 H 1.07999 * 125.89730 * 179.97438 * 22 21 20 40 40 H 1.09001 * 109.47413 * 89.99765 * 25 24 20 41 41 H 1.09004 * 109.46902 * 210.00237 * 25 24 20 42 42 H 1.09003 * 109.46820 * 329.99340 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4545 7 6 0.8648 0.9415 -2.5889 8 6 2.1945 -0.9407 -3.6507 9 6 1.0841 -1.4705 -4.5686 10 7 1.0815 -0.1596 -5.2353 11 6 0.1686 0.5951 -5.9227 12 1 -0.8660 0.2881 -5.9617 13 6 0.5733 1.7549 -6.5692 14 7 -0.2703 2.4064 -7.3413 15 14 2.3151 2.3910 -6.3435 16 1 2.5301 3.5679 -7.2232 17 1 2.5173 2.7882 -4.9269 18 1 3.2825 1.3224 -6.7009 19 6 2.4923 -0.0190 -4.8448 20 6 2.0324 -0.7105 1.2305 21 6 2.2089 -2.0453 1.3648 22 6 2.6881 -2.2883 2.6561 23 7 2.7949 -1.1405 3.2751 24 7 2.3923 -0.1288 2.3938 25 6 2.3630 1.3066 2.6849 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.1832 0.6440 -2.6220 30 1 1.0287 1.6003 -1.7361 31 1 1.1227 1.4667 -3.5086 32 1 2.9826 -1.6636 -3.4394 33 1 0.1553 -1.6920 -4.0429 34 1 1.4078 -2.2859 -5.2155 35 1 -1.1813 2.0884 -7.4412 36 1 3.1872 -0.4518 -5.5645 37 1 2.7632 0.9961 -4.5544 38 1 2.0138 -2.7913 0.6086 39 1 2.9277 -3.2562 3.0710 40 1 1.3912 1.5735 3.1001 41 1 3.1446 1.5471 3.4057 42 1 2.5318 1.8673 1.7655 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042740116.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:11 Heat of formation + Delta-G solvation = 130.425637 kcal Electronic energy + Delta-G solvation = -24297.893300 eV Core-core repulsion = 20897.259860 eV Total energy + Delta-G solvation = -3400.633440 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.46012 -40.09820 -38.17616 -34.89945 -33.80387 -33.01609 -32.28615 -29.15204 -28.16573 -26.81199 -26.58935 -25.42683 -24.72421 -22.71864 -21.29407 -20.80921 -19.40923 -18.49405 -17.55241 -17.23242 -16.39041 -16.12813 -15.61645 -15.22731 -14.81497 -14.65655 -14.06505 -13.84347 -13.77484 -13.65665 -13.32170 -12.98080 -12.93682 -12.83048 -12.47373 -12.24476 -12.09357 -11.98202 -11.61812 -11.36155 -11.10233 -10.95343 -10.67067 -10.63265 -10.42572 -9.59649 -9.43009 -9.29943 -9.25583 -8.95763 -8.41480 -8.24754 -7.23233 -6.41003 -3.32166 1.81687 2.39285 2.70346 2.89856 3.20397 3.27783 3.35796 3.55085 4.25035 4.43567 4.48652 4.52719 4.66606 4.81218 4.89982 5.00158 5.10035 5.10453 5.21535 5.32810 5.43889 5.44158 5.54833 5.73275 5.74514 5.84034 5.87397 5.92384 5.94481 6.13833 6.16974 6.27497 6.30376 6.33333 6.55378 6.72223 6.91115 6.97437 7.01724 7.65454 7.69672 8.15150 8.30694 8.88595 9.40703 10.27952 11.11300 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027842 B = 0.004165 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.436253 B = 6720.651359 C = 7009.479925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.044 4.044 3 H 0.103 0.897 4 C 0.522 3.478 5 O -0.532 6.532 6 N -0.577 5.577 7 C 0.078 3.922 8 C 0.098 3.902 9 C 0.110 3.890 10 N -0.625 5.625 11 C -0.304 4.304 12 H 0.083 0.917 13 C -0.023 4.023 14 N -0.932 5.932 15 Si 1.067 2.933 16 H -0.295 1.295 17 H -0.294 1.294 18 H -0.287 1.287 19 C 0.087 3.913 20 C 0.091 3.909 21 C -0.228 4.228 22 C 0.039 3.961 23 N -0.301 5.301 24 N -0.375 5.375 25 C 0.099 3.901 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.262 0.738 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.154 0.846 39 H 0.181 0.819 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.586 -3.249 17.623 18.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.067 4.067 3 H 0.121 0.879 4 C 0.308 3.692 5 O -0.409 6.409 6 N -0.308 5.308 7 C -0.065 4.065 8 C -0.007 4.007 9 C -0.017 4.017 10 N -0.354 5.354 11 C -0.430 4.430 12 H 0.100 0.900 13 C -0.222 4.222 14 N -0.574 5.574 15 Si 0.900 3.100 16 H -0.222 1.222 17 H -0.222 1.222 18 H -0.214 1.214 19 C -0.039 4.039 20 C -0.036 4.036 21 C -0.257 4.257 22 C -0.147 4.147 23 N -0.123 5.123 24 N -0.159 5.159 25 C -0.042 4.042 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.172 0.828 39 H 0.198 0.802 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.124 -1.666 18.198 18.979 hybrid contribution -1.327 -1.521 -0.492 2.077 sum 3.797 -3.187 17.706 18.387 Atomic orbital electron populations 1.22047 0.91059 1.03973 1.03879 1.19735 0.98180 0.99556 0.89195 0.87893 1.19996 0.80498 0.84732 0.83947 1.90690 1.38025 1.26149 1.86040 1.47280 1.50207 1.28898 1.04437 1.22064 0.94692 0.86364 1.03358 1.22538 0.97934 0.95826 0.84375 1.22774 0.96618 0.90057 0.92258 1.46143 1.06567 1.15914 1.66827 1.20093 0.89589 1.04670 1.28620 0.89966 1.25675 1.06219 0.95150 0.95189 1.70918 1.06503 1.43597 1.36417 0.83753 0.75313 0.75943 0.74979 1.22192 1.22240 1.21350 1.23190 0.89470 0.98395 0.92889 1.20309 1.01528 0.93633 0.88133 1.21411 1.11221 0.95031 0.98017 1.23851 0.99930 0.96959 0.93916 1.77304 1.22926 0.95805 1.16270 1.48378 1.51493 1.06652 1.09390 1.21821 1.03638 0.75666 1.03107 0.91680 0.89520 0.91384 0.91877 0.92464 0.88473 0.87515 0.93417 0.93415 0.92815 0.92437 0.92702 0.82812 0.80174 0.90807 0.89338 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.81 37.16 0.33 -1.23 16 2 C -0.04 -0.52 2.12 -92.92 -0.20 -0.71 16 3 H 0.10 1.03 6.20 -51.93 -0.32 0.71 16 4 C 0.52 7.91 7.00 -10.99 -0.08 7.83 16 5 O -0.53 -9.41 13.25 5.55 0.07 -9.33 16 6 N -0.58 -9.17 3.12 -173.56 -0.54 -9.71 16 7 C 0.08 1.18 7.91 59.85 0.47 1.65 16 8 C 0.10 1.70 4.67 -67.68 -0.32 1.39 16 9 C 0.11 2.08 8.31 -8.50 -0.07 2.00 16 10 N -0.63 -14.05 2.40 -184.62 -0.44 -14.49 16 11 C -0.30 -8.05 10.70 -15.06 -0.16 -8.21 16 12 H 0.08 2.34 8.05 -52.49 -0.42 1.91 16 13 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 14 N -0.93 -28.02 13.71 55.49 0.76 -27.26 16 15 Si 1.07 25.19 24.77 -169.99 -4.21 20.98 16 16 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 17 H -0.29 -6.36 6.53 56.52 0.37 -5.99 16 18 H -0.29 -6.41 6.16 56.52 0.35 -6.06 16 19 C 0.09 1.71 4.73 -8.37 -0.04 1.67 16 20 C 0.09 1.20 5.73 -82.26 -0.47 0.73 16 21 C -0.23 -3.20 9.14 -40.01 -0.37 -3.57 16 22 C 0.04 0.50 12.03 -17.37 -0.21 0.29 16 23 N -0.30 -4.20 12.58 30.62 0.39 -3.82 16 24 N -0.38 -4.69 4.01 -63.88 -0.26 -4.95 16 25 C 0.10 0.80 11.27 59.85 0.67 1.47 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.09 0.88 4.53 -51.93 -0.24 0.65 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.96 6.95 -51.93 -0.36 0.60 16 30 H 0.06 0.67 6.01 -51.93 -0.31 0.36 16 31 H 0.10 1.83 4.97 -51.93 -0.26 1.58 16 32 H 0.11 1.77 7.29 -51.93 -0.38 1.39 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.26 7.79 8.73 -40.82 -0.36 7.43 16 36 H 0.06 1.12 7.67 -51.93 -0.40 0.72 16 37 H 0.06 1.11 3.90 -51.93 -0.20 0.91 16 38 H 0.15 2.26 6.80 -52.49 -0.36 1.90 16 39 H 0.18 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.54 6.97 -51.93 -0.36 0.18 16 LS Contribution 326.51 15.07 4.92 4.92 Total: -1.00 -33.02 326.51 -5.65 -38.66 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.81 Total: 2.41 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -0.53 Total: 2.59 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: -0.10 Total: -60.23 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.07 Total: -9.33 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -4.21 Total: 20.98 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.02 -5.65 -38.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042740116.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.090 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds