Wall clock time and date at job start Tue Mar 31 2020 03:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47240 * 2 1 4 4 C 1.50697 * 109.47185 * 240.00242 * 2 1 3 5 5 O 1.21290 * 120.00131 * 240.00281 * 4 2 1 6 6 N 1.34774 * 119.99991 * 59.99642 * 4 2 1 7 7 C 1.46502 * 120.00068 * 0.02562 * 6 4 2 8 8 C 1.46498 * 120.00146 * 180.02562 * 6 4 2 9 9 C 1.53496 * 114.21138 * 119.99825 * 8 6 4 10 10 N 1.47070 * 87.98076 * 87.71671 * 9 8 6 11 11 C 1.36941 * 136.05440 * 207.08124 * 10 9 8 12 12 H 1.07997 * 120.00412 * 7.86028 * 11 10 9 13 13 C 1.38814 * 119.99634 * 187.85423 * 11 10 9 14 14 N 1.31616 * 119.99939 * 173.06607 * 13 11 10 15 15 Si 1.86796 * 120.00336 * 353.06587 * 13 11 10 16 16 H 1.48499 * 109.47209 * 175.20930 * 15 13 11 17 17 H 1.48510 * 109.47106 * 295.21158 * 15 13 11 18 18 H 1.48503 * 109.47106 * 55.20691 * 15 13 11 19 19 C 1.47063 * 87.88519 * 27.34830 * 10 9 8 20 20 C 1.50707 * 109.47265 * 120.00120 * 2 1 3 21 21 C 1.35316 * 126.12636 * 85.02250 * 20 2 1 22 22 C 1.39865 * 107.91952 * 179.97438 * 21 20 2 23 23 N 1.30838 * 108.20436 * 0.02562 * 22 21 20 24 24 N 1.34947 * 126.12647 * 264.71466 * 20 2 1 25 25 C 1.46498 * 126.03706 * 0.03775 * 24 20 2 26 26 H 1.09004 * 109.46945 * 299.99596 * 1 2 3 27 27 H 1.08995 * 109.47402 * 59.99658 * 1 2 3 28 28 H 1.09001 * 109.47240 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47136 * 270.00131 * 7 6 4 30 30 H 1.08998 * 109.46845 * 29.99973 * 7 6 4 31 31 H 1.09001 * 109.46872 * 149.99989 * 7 6 4 32 32 H 1.09007 * 113.27923 * 346.93027 * 8 6 4 33 33 H 1.09000 * 113.46265 * 332.94223 * 9 8 6 34 34 H 1.09000 * 113.46978 * 202.49518 * 9 8 6 35 35 H 0.97007 * 119.99810 * 1.51422 * 14 13 11 36 36 H 1.08997 * 113.47359 * 87.43609 * 19 10 9 37 37 H 1.09003 * 113.46485 * 217.88067 * 19 10 9 38 38 H 1.07998 * 126.03673 * 359.94606 * 21 20 2 39 39 H 1.07999 * 125.89730 * 179.97438 * 22 21 20 40 40 H 1.09001 * 109.47413 * 89.99765 * 25 24 20 41 41 H 1.09004 * 109.46902 * 210.00237 * 25 24 20 42 42 H 1.09003 * 109.46820 * 329.99340 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4545 7 6 0.8648 0.9415 -2.5889 8 6 2.1945 -0.9407 -3.6507 9 6 1.0841 -1.4705 -4.5686 10 7 1.0815 -0.1596 -5.2353 11 6 0.1686 0.5951 -5.9227 12 1 -0.8660 0.2881 -5.9617 13 6 0.5733 1.7549 -6.5692 14 7 -0.2703 2.4064 -7.3413 15 14 2.3151 2.3910 -6.3435 16 1 2.5301 3.5679 -7.2232 17 1 2.5173 2.7882 -4.9269 18 1 3.2825 1.3224 -6.7009 19 6 2.4923 -0.0190 -4.8448 20 6 2.0324 -0.7105 1.2305 21 6 2.2089 -2.0453 1.3648 22 6 2.6881 -2.2883 2.6561 23 7 2.7949 -1.1405 3.2751 24 7 2.3923 -0.1288 2.3938 25 6 2.3630 1.3066 2.6849 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.1832 0.6440 -2.6220 30 1 1.0287 1.6003 -1.7361 31 1 1.1227 1.4667 -3.5086 32 1 2.9826 -1.6636 -3.4394 33 1 0.1553 -1.6920 -4.0429 34 1 1.4078 -2.2859 -5.2155 35 1 -1.1813 2.0884 -7.4412 36 1 3.1872 -0.4518 -5.5645 37 1 2.7632 0.9961 -4.5544 38 1 2.0138 -2.7913 0.6086 39 1 2.9277 -3.2562 3.0710 40 1 1.3912 1.5735 3.1001 41 1 3.1446 1.5471 3.4057 42 1 2.5318 1.8673 1.7655 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042740116.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:11 Heat of formation + Delta-G solvation = 107.818106 kcal Electronic energy + Delta-G solvation = -24298.873636 eV Core-core repulsion = 20897.259860 eV Total energy + Delta-G solvation = -3401.613777 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.45033 -41.39336 -39.59324 -36.10447 -35.06098 -34.28508 -33.76718 -30.36136 -29.66888 -27.91406 -27.53939 -26.97609 -25.86819 -24.22202 -22.49195 -21.98499 -20.62486 -19.91032 -19.26534 -18.35721 -17.59553 -17.46789 -16.55520 -16.52201 -16.20969 -15.73978 -15.66249 -15.30349 -15.09371 -14.72473 -14.61854 -14.31346 -13.95663 -13.62364 -13.43581 -13.30893 -13.19866 -13.10639 -13.08449 -12.64302 -12.57879 -12.39060 -12.16081 -12.08649 -11.61289 -11.28873 -11.12780 -10.97329 -10.74088 -10.21307 -9.58506 -9.38036 -9.15401 -8.58906 -5.41574 0.85967 1.40697 1.47405 1.50160 1.57786 1.69204 1.89285 2.07218 2.56948 2.95686 3.27295 3.29189 3.47415 3.63213 3.74662 3.92218 4.04971 4.22973 4.33096 4.36169 4.36922 4.44757 4.60157 4.63413 4.66227 4.67612 4.68804 4.74517 4.81165 4.85542 4.87119 4.94014 5.08195 5.20480 5.28359 5.32093 5.57244 5.77147 5.99592 6.08595 6.43596 6.74492 6.74547 7.10251 7.36931 8.31432 8.96395 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027842 B = 0.004165 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.436253 B = 6720.651359 C = 7009.479925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.035 4.035 3 H 0.132 0.868 4 C 0.523 3.477 5 O -0.558 6.558 6 N -0.581 5.581 7 C 0.081 3.919 8 C 0.118 3.882 9 C 0.110 3.890 10 N -0.647 5.647 11 C -0.279 4.279 12 H 0.050 0.950 13 C -0.077 4.077 14 N -0.973 5.973 15 Si 1.100 2.900 16 H -0.311 1.311 17 H -0.262 1.262 18 H -0.267 1.267 19 C 0.083 3.917 20 C 0.089 3.911 21 C -0.253 4.253 22 C 0.034 3.966 23 N -0.326 5.326 24 N -0.375 5.375 25 C 0.086 3.914 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.120 0.880 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.247 0.753 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.141 0.859 39 H 0.205 0.795 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.932 -2.879 19.776 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.058 4.058 3 H 0.149 0.851 4 C 0.311 3.689 5 O -0.436 6.436 6 N -0.311 5.311 7 C -0.061 4.061 8 C 0.012 3.988 9 C -0.017 4.017 10 N -0.376 5.376 11 C -0.406 4.406 12 H 0.068 0.932 13 C -0.270 4.270 14 N -0.619 5.619 15 Si 0.927 3.073 16 H -0.240 1.240 17 H -0.188 1.188 18 H -0.192 1.192 19 C -0.042 4.042 20 C -0.040 4.040 21 C -0.282 4.282 22 C -0.150 4.150 23 N -0.148 5.148 24 N -0.158 5.158 25 C -0.054 4.054 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.138 0.862 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.158 0.842 39 H 0.221 0.779 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.478 -1.329 20.414 21.458 hybrid contribution -1.803 -1.745 -1.096 2.738 sum 4.675 -3.074 19.318 20.112 Atomic orbital electron populations 1.22020 0.89700 1.03613 1.05047 1.19758 0.99038 1.00202 0.86820 0.85091 1.20518 0.79681 0.84366 0.84362 1.90691 1.39167 1.27377 1.86398 1.47344 1.50372 1.29101 1.04325 1.22057 0.94268 0.86361 1.03426 1.22289 0.97238 0.95116 0.84166 1.22939 0.97359 0.88939 0.92431 1.46118 1.07596 1.17420 1.66478 1.19869 0.89165 1.04556 1.27004 0.93190 1.26836 1.08942 0.95921 0.95266 1.71027 1.06295 1.45036 1.39505 0.83385 0.72026 0.75434 0.76409 1.23981 1.18824 1.19207 1.23350 0.87743 0.99098 0.94018 1.20453 1.01140 0.93605 0.88768 1.21457 1.12808 0.95556 0.98418 1.24248 0.99327 0.97869 0.93538 1.77258 1.23852 0.96453 1.17229 1.48702 1.50471 1.07883 1.08773 1.22225 1.05090 0.73443 1.04617 0.89458 0.89299 0.92606 0.92308 0.88436 0.91836 0.86193 0.93643 0.91997 0.94420 0.91387 0.92667 0.84160 0.77885 0.88922 0.88669 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.81 71.98 0.63 -1.90 16 2 C -0.04 -0.72 2.12 -12.29 -0.03 -0.75 16 3 H 0.13 1.96 6.20 -2.39 -0.01 1.95 16 4 C 0.52 14.46 7.00 87.66 0.61 15.07 16 5 O -0.56 -18.68 13.25 -3.06 -0.04 -18.72 16 6 N -0.58 -16.89 3.12 -821.41 -2.56 -19.45 16 7 C 0.08 2.25 7.91 127.77 1.01 3.26 16 8 C 0.12 3.78 4.67 45.55 0.21 3.99 16 9 C 0.11 3.96 8.31 83.18 0.69 4.65 16 10 N -0.65 -28.33 2.40 -738.02 -1.77 -30.11 16 11 C -0.28 -14.91 10.70 84.03 0.90 -14.01 16 12 H 0.05 2.94 8.05 -2.91 -0.02 2.92 16 13 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 14 N -0.97 -60.16 13.71 21.65 0.30 -59.86 16 15 Si 1.10 49.93 24.77 68.60 1.70 51.62 16 16 H -0.31 -14.91 7.11 99.48 0.71 -14.21 16 17 H -0.26 -10.41 6.53 99.48 0.65 -9.76 16 18 H -0.27 -11.09 6.16 99.48 0.61 -10.47 16 19 C 0.08 3.08 4.73 83.27 0.39 3.47 16 20 C 0.09 2.13 5.73 41.41 0.24 2.36 16 21 C -0.25 -6.82 9.14 21.99 0.20 -6.62 16 22 C 0.03 0.84 12.03 85.23 1.02 1.87 16 23 N -0.33 -8.50 12.58 -57.03 -0.72 -9.22 16 24 N -0.37 -8.35 4.01 -356.02 -1.43 -9.78 16 25 C 0.09 1.08 11.27 127.77 1.44 2.52 16 26 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.09 1.52 4.53 -2.39 -0.01 1.51 16 28 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.67 6.95 -2.39 -0.02 1.66 16 30 H 0.10 1.88 6.01 -2.39 -0.01 1.86 16 31 H 0.06 2.25 4.97 -2.39 -0.01 2.24 16 32 H 0.12 3.63 7.29 -2.38 -0.02 3.62 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.25 15.36 8.73 -92.70 -0.81 14.55 16 36 H 0.07 2.42 7.67 -2.39 -0.02 2.40 16 37 H 0.06 2.07 3.90 -2.39 -0.01 2.06 16 38 H 0.14 4.09 6.80 -2.91 -0.02 4.07 16 39 H 0.20 3.60 8.06 -2.91 -0.02 3.58 16 40 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 42 H 0.11 0.87 6.97 -2.39 -0.02 0.85 16 Total: -1.00 -72.97 326.51 4.12 -68.85 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.85 Total: 16.63 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 7.80 Total: 10.03 kcal Atomic # 7 Polarization: -122.23 SS G_CDS: -6.18 Total: -128.42 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.04 Total: -18.72 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 1.70 Total: 51.62 kcal Total: -72.97 4.12 -68.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042740116.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.670 kcal (2) G-P(sol) polarization free energy of solvation -72.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds