Wall clock time and date at job start Tue Mar 31 2020 03:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46776 * 2 1 4 4 N 1.46502 * 109.47393 * 120.00060 * 2 1 3 5 5 N 1.28444 * 125.18656 * 294.95757 * 4 2 1 6 6 C 1.30865 * 110.92343 * 180.02562 * 5 4 2 7 7 C 1.39671 * 107.86261 * 359.77314 * 6 5 4 8 8 C 1.36596 * 125.18826 * 114.97776 * 4 2 1 9 9 C 1.47164 * 126.88662 * 359.94879 * 8 4 2 10 10 O 1.21629 * 119.99958 * 9.69538 * 9 8 4 11 11 N 1.34776 * 119.99607 * 189.69922 * 9 8 4 12 12 C 1.46496 * 120.00521 * 0.41410 * 11 9 8 13 13 C 1.46504 * 119.99402 * 180.42112 * 11 9 8 14 14 C 1.53944 * 113.83859 * 141.35090 * 13 11 9 15 15 N 1.47582 * 86.11851 * 90.74588 * 14 13 11 16 16 C 1.36939 * 134.49448 * 204.63761 * 15 14 13 17 17 H 1.07998 * 119.99880 * 180.02562 * 16 15 14 18 18 C 1.38814 * 119.99582 * 0.02562 * 16 15 14 19 19 N 1.31610 * 120.00542 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99516 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47137 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.46890 * 120.00138 * 20 18 16 23 23 H 1.48502 * 109.47032 * 240.00252 * 20 18 16 24 24 C 1.47583 * 91.01288 * 24.64184 * 15 14 13 25 25 H 1.09000 * 109.47407 * 59.99871 * 1 2 3 26 26 H 1.09005 * 109.46887 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47133 * 299.99849 * 1 2 3 28 28 H 1.08997 * 109.47133 * 240.00151 * 2 1 3 29 29 H 1.09005 * 109.46597 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47243 * 299.99672 * 3 2 1 31 31 H 1.08997 * 109.47166 * 60.00171 * 3 2 1 32 32 H 1.07996 * 126.06905 * 180.02562 * 6 5 4 33 33 H 1.07999 * 127.32479 * 180.23651 * 7 6 5 34 34 H 1.09003 * 109.47391 * 276.32322 * 12 11 9 35 35 H 1.09000 * 109.47045 * 36.31856 * 12 11 9 36 36 H 1.08999 * 109.47054 * 156.31716 * 12 11 9 37 37 H 1.08996 * 112.94528 * 9.66462 * 13 11 9 38 38 H 1.09002 * 113.76961 * 205.05374 * 14 13 11 39 39 H 1.09001 * 113.76816 * 336.44609 * 14 13 11 40 40 H 0.96996 * 120.00582 * 179.97438 * 19 18 16 41 41 H 1.08999 * 113.76788 * 221.05942 * 24 15 14 42 42 H 1.08993 * 113.77058 * 89.65777 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 7 1.8476 -0.2891 2.4042 6 6 2.3991 -1.1172 3.2543 7 6 2.9787 -2.1575 2.5244 8 6 2.7253 -1.8595 1.1968 9 6 3.1308 -2.6471 0.0217 10 8 2.9929 -2.1872 -1.0958 11 7 3.6549 -3.8782 0.1839 12 6 3.8125 -4.4359 1.5293 13 6 4.0671 -4.6586 -0.9855 14 6 5.3627 -5.4621 -0.7720 15 7 4.4879 -6.5608 -0.3185 16 6 4.6555 -7.6456 0.5003 17 1 3.8320 -8.3217 0.6762 18 6 5.8840 -7.8760 1.1041 19 7 6.8875 -7.0517 0.8901 20 14 6.1125 -9.3554 2.2216 21 1 4.8410 -10.1187 2.2985 22 1 7.1822 -10.2282 1.6748 23 1 6.4956 -8.8948 3.5804 24 6 3.3598 -6.0209 -1.1021 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 2.4018 -1.0165 4.3295 33 1 3.5129 -3.0119 2.9132 34 1 4.7432 -4.0737 1.9661 35 1 2.9737 -4.1248 2.1521 36 1 3.8376 -5.5240 1.4709 37 1 4.0575 -4.0786 -1.9083 38 1 5.9010 -5.6811 -1.6942 39 1 6.0050 -5.0601 0.0116 40 1 7.7458 -7.2125 1.3124 41 1 2.4028 -6.0650 -0.5821 42 1 3.3096 -6.4040 -2.1213 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042789825.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:18 Heat of formation + Delta-G solvation = 128.068244 kcal Electronic energy + Delta-G solvation = -24271.832659 eV Core-core repulsion = 20871.096994 eV Total energy + Delta-G solvation = -3400.735665 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.49257 -39.63450 -37.59598 -35.86062 -34.19336 -32.21955 -30.56639 -30.30183 -27.87676 -27.46402 -26.45696 -24.85645 -24.12099 -22.95186 -22.07828 -21.19817 -19.16057 -18.54553 -17.14407 -16.70697 -16.31212 -15.92387 -15.36651 -14.97091 -14.87146 -14.63994 -14.20062 -13.86766 -13.75597 -13.09840 -13.03142 -12.75392 -12.59087 -12.44471 -12.39659 -12.31362 -11.53799 -11.42834 -11.38166 -11.31809 -11.18105 -10.92409 -10.63979 -10.30116 -10.20823 -9.84177 -9.64618 -9.59318 -9.09108 -8.89264 -8.81722 -8.11005 -6.94762 -5.85510 -3.19330 1.44748 2.43235 2.74567 3.32954 3.38906 3.40062 3.41911 3.42927 4.37754 4.45142 4.65078 4.76924 4.91866 5.08419 5.12365 5.26983 5.35911 5.40322 5.45267 5.49537 5.54773 5.63333 5.69374 5.78156 5.87873 5.96060 6.02267 6.07282 6.13711 6.18595 6.40483 6.47040 6.61922 6.68669 6.87637 6.92590 7.11928 7.23452 7.48247 7.80145 7.89386 8.17565 8.40042 8.95718 9.61546 10.49191 11.30449 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026173 B = 0.004165 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.538555 B = 6720.702406 C = 7304.202563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.127 3.873 3 C -0.156 4.156 4 N -0.253 5.253 5 N -0.281 5.281 6 C -0.012 4.012 7 C -0.203 4.203 8 C -0.030 4.030 9 C 0.583 3.417 10 O -0.559 6.559 11 N -0.554 5.554 12 C 0.048 3.952 13 C 0.088 3.912 14 C 0.153 3.847 15 N -0.608 5.608 16 C -0.228 4.228 17 H 0.081 0.919 18 C -0.002 4.002 19 N -0.916 5.916 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.289 1.289 24 C 0.106 3.894 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.137 0.863 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.183 0.817 33 H 0.181 0.819 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.097 0.903 38 H 0.040 0.960 39 H 0.081 0.919 40 H 0.254 0.746 41 H 0.047 0.953 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.433 12.900 0.862 16.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.027 3.973 3 C -0.214 4.214 4 N -0.042 5.042 5 N -0.113 5.113 6 C -0.188 4.188 7 C -0.231 4.231 8 C -0.158 4.158 9 C 0.371 3.629 10 O -0.440 6.440 11 N -0.283 5.283 12 C -0.094 4.094 13 C -0.017 4.017 14 C 0.027 3.973 15 N -0.335 5.335 16 C -0.355 4.355 17 H 0.098 0.902 18 C -0.200 4.200 19 N -0.563 5.563 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.216 1.216 24 C -0.021 4.021 25 H 0.096 0.904 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.154 0.846 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.200 0.800 33 H 0.198 0.802 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.140 0.860 37 H 0.115 0.885 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.976 13.961 0.299 17.161 hybrid contribution 0.817 -1.746 0.718 2.057 sum -9.158 12.215 1.017 15.301 Atomic orbital electron populations 1.22121 0.93203 1.03035 1.03259 1.22066 0.95673 0.94556 0.85053 1.22071 1.01986 0.94066 1.03255 1.45915 1.37180 1.15667 1.05426 1.73050 1.22207 1.26113 0.89962 1.23595 1.01880 0.93556 0.99802 1.23226 1.06274 1.02625 0.90998 1.21422 1.05751 0.92612 0.96011 1.16971 0.78161 0.81294 0.86494 1.90655 1.57552 1.70485 1.25349 1.47080 1.58799 1.13824 1.08582 1.22791 1.00289 1.04845 0.81490 1.23011 0.99423 0.91892 0.87377 1.22647 0.91505 0.85006 0.98102 1.46197 1.07836 1.28857 1.50611 1.19047 0.96659 1.01416 1.18414 0.90163 1.24760 0.95620 0.98885 1.00692 1.69814 1.02170 1.37499 1.46827 0.86109 0.77687 0.82134 0.80190 1.20471 1.21779 1.21606 1.23015 0.93320 0.90296 0.95423 0.90389 0.92033 0.91403 0.84590 0.91983 0.90484 0.91240 0.80001 0.80176 0.92398 0.90950 0.85975 0.88541 0.94272 0.90121 0.93567 0.93463 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.45 37.16 0.35 -1.30 16 2 C 0.13 1.59 3.56 -67.93 -0.24 1.35 16 3 C -0.16 -1.63 9.30 37.16 0.35 -1.28 16 4 N -0.25 -3.74 3.09 -50.69 -0.16 -3.90 16 5 N -0.28 -4.04 11.53 30.59 0.35 -3.68 16 6 C -0.01 -0.16 12.03 -17.43 -0.21 -0.37 16 7 C -0.20 -2.87 8.86 -38.98 -0.35 -3.22 16 8 C -0.03 -0.48 6.80 -82.06 -0.56 -1.04 16 9 C 0.58 10.43 7.65 -12.64 -0.10 10.33 16 10 O -0.56 -10.73 13.91 5.25 0.07 -10.66 16 11 N -0.55 -10.08 3.09 -177.11 -0.55 -10.63 16 12 C 0.05 0.83 7.80 59.84 0.47 1.30 16 13 C 0.09 1.68 4.52 -70.14 -0.32 1.36 16 14 C 0.15 3.42 6.77 -2.97 -0.02 3.40 16 15 N -0.61 -14.30 2.26 -178.08 -0.40 -14.70 16 16 C -0.23 -5.89 9.68 -15.06 -0.15 -6.03 16 17 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 18 C 0.00 -0.06 5.50 -17.43 -0.10 -0.16 16 19 N -0.92 -25.36 11.38 55.49 0.63 -24.73 16 20 Si 0.91 20.92 29.55 -169.99 -5.02 15.89 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.11 2.10 8.39 -2.97 -0.02 2.08 16 25 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.14 1.93 5.35 -51.93 -0.28 1.65 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 32 H 0.18 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.18 2.33 4.63 -52.49 -0.24 2.09 16 34 H 0.06 1.01 7.64 -51.93 -0.40 0.61 16 35 H 0.07 1.08 4.90 -51.93 -0.25 0.82 16 36 H 0.12 2.52 5.07 -51.93 -0.26 2.26 16 37 H 0.10 1.79 7.22 -51.93 -0.37 1.42 16 38 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.98 6.90 -51.93 -0.36 1.62 16 40 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 335.58 15.07 5.06 5.06 Total: -1.00 -29.81 335.58 -6.85 -36.65 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.94 Total: 4.27 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -0.89 Total: 6.42 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.12 Total: -57.64 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.07 Total: -10.66 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.81 -6.85 -36.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042789825.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.722 kcal (2) G-P(sol) polarization free energy of solvation -29.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds