Wall clock time and date at job start Tue Mar 31 2020 03:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46509 * 109.46926 * 2 1 4 4 C 1.34257 * 125.75229 * 125.00100 * 3 2 1 5 5 C 1.38042 * 107.41621 * 179.97438 * 4 3 2 6 6 C 1.47428 * 126.41447 * 180.02562 * 5 4 3 7 7 O 1.21607 * 119.99791 * 141.32158 * 6 5 4 8 8 N 1.34777 * 119.99886 * 321.31182 * 6 5 4 9 9 C 1.46492 * 120.00073 * 5.13823 * 8 6 5 10 10 C 1.46500 * 119.99628 * 185.12647 * 8 6 5 11 11 C 1.53944 * 113.74271 * 218.74481 * 10 8 6 12 12 N 1.47808 * 86.03999 * 222.09096 * 11 10 8 13 13 C 1.36938 * 134.45966 * 204.64828 * 12 11 10 14 14 H 1.07995 * 120.00247 * 172.89179 * 13 12 11 15 15 C 1.38813 * 119.99733 * 352.88915 * 13 12 11 16 16 N 1.31617 * 120.00059 * 5.08083 * 15 13 12 17 17 Si 1.86802 * 119.99763 * 185.08210 * 15 13 12 18 18 H 1.48500 * 109.47107 * 94.97930 * 17 15 13 19 19 H 1.48501 * 109.46825 * 214.97774 * 17 15 13 20 20 H 1.48503 * 109.47041 * 334.97306 * 17 15 13 21 21 C 1.47580 * 91.05190 * 24.54995 * 12 11 10 22 22 C 1.41294 * 107.17044 * 359.97438 * 5 4 3 23 23 C 1.50701 * 125.98776 * 179.97438 * 22 5 4 24 24 N 1.30452 * 108.02241 * 359.72127 * 22 5 4 25 25 H 1.08994 * 109.46989 * 300.00223 * 1 2 3 26 26 H 1.09006 * 109.47158 * 59.99873 * 1 2 3 27 27 H 1.09001 * 109.46889 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47138 * 240.00467 * 2 1 3 29 29 H 1.08992 * 109.47307 * 119.99623 * 2 1 3 30 30 H 1.08001 * 126.29320 * 0.02562 * 4 3 2 31 31 H 1.08997 * 109.47720 * 84.65063 * 9 8 6 32 32 H 1.08998 * 109.47211 * 204.65403 * 9 8 6 33 33 H 1.09007 * 109.47087 * 324.65129 * 9 8 6 34 34 H 1.09000 * 112.94926 * 350.34496 * 10 8 6 35 35 H 1.09008 * 113.76990 * 336.35270 * 11 10 8 36 36 H 1.08993 * 113.77227 * 107.75093 * 11 10 8 37 37 H 0.96998 * 120.00172 * 180.02562 * 16 15 13 38 38 H 1.09005 * 113.77212 * 221.15771 * 21 12 11 39 39 H 1.09002 * 113.77126 * 89.75705 * 21 12 11 40 40 H 1.09001 * 109.46696 * 90.00168 * 23 22 5 41 41 H 1.09000 * 109.47087 * 210.00068 * 23 22 5 42 42 H 1.09000 * 109.47248 * 330.00623 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8690 1.9126 0.8925 5 6 3.0714 3.2309 0.5364 6 6 3.9334 4.2031 1.2330 7 8 4.5921 4.9998 0.5926 8 7 3.9911 4.2091 2.5795 9 6 3.2868 3.1794 3.3474 10 6 4.7584 5.2452 3.2751 11 6 5.5225 4.7283 4.5076 12 7 5.0755 5.9680 5.1771 13 6 5.5453 6.7157 6.2237 14 1 5.0887 7.6665 6.4559 15 6 6.6084 6.2516 6.9861 16 7 7.2293 5.1428 6.6436 17 14 7.1576 7.2007 8.4984 18 1 6.5046 6.6313 9.7044 19 1 8.6324 7.0977 8.6388 20 1 6.7727 8.6277 8.3541 21 6 3.9216 6.0775 4.2636 22 6 2.2986 3.4736 -0.6213 23 6 2.2070 4.7799 -1.3670 24 7 1.6825 2.3672 -0.9346 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8899 30 1 3.3140 1.4022 1.7339 31 1 3.9131 2.2906 3.4234 32 1 3.0688 3.5567 4.3465 33 1 2.3542 2.9247 2.8437 34 1 5.3682 5.8470 2.6012 35 1 5.1000 3.8200 4.9374 36 1 6.6012 4.6701 4.3631 37 1 7.9719 4.8183 7.1765 38 1 3.7246 7.0946 3.9246 39 1 3.0278 5.5665 4.6216 40 1 2.9790 4.8143 -2.1357 41 1 1.2255 4.8638 -1.8337 42 1 2.3502 5.6064 -0.6710 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043980962.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:22 Heat of formation + Delta-G solvation = 105.170575 kcal Electronic energy + Delta-G solvation = -23499.718509 eV Core-core repulsion = 20097.989927 eV Total energy + Delta-G solvation = -3401.728582 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.52948 -39.37238 -37.40859 -34.96982 -34.43725 -32.07860 -31.52633 -30.08257 -27.95413 -27.48833 -26.67448 -24.79276 -24.15899 -23.08493 -21.84054 -20.47870 -19.22091 -18.51818 -17.07787 -16.88069 -16.44936 -15.80941 -15.65151 -15.03614 -14.74566 -14.42600 -14.26371 -13.80307 -13.63723 -13.31651 -13.03982 -12.60735 -12.57099 -12.46489 -12.26706 -12.20785 -11.91905 -11.72323 -11.67998 -11.51747 -11.29512 -10.89210 -10.80288 -10.69495 -10.24777 -10.05301 -9.55776 -9.46664 -9.39249 -8.79539 -8.62553 -8.05945 -6.89455 -5.80478 -3.12119 1.54576 2.19654 2.24515 3.29612 3.39060 3.44094 3.46316 3.55212 4.13238 4.46660 4.51648 4.55899 4.67762 4.80614 4.99444 5.13513 5.21925 5.25252 5.36274 5.38346 5.45412 5.51356 5.54305 5.68427 5.70571 5.77651 5.87121 5.89146 5.92280 6.12201 6.22206 6.47163 6.49812 6.61589 6.72405 6.84768 7.20177 7.36798 7.52454 7.55241 7.85905 7.94773 8.59608 9.01984 9.68014 10.56449 11.37393 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029330 B = 0.003324 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.421147 B = 8420.577845 C = 8963.249775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.127 3.873 3 N -0.363 5.363 4 C 0.093 3.907 5 C -0.277 4.277 6 C 0.589 3.411 7 O -0.543 6.543 8 N -0.596 5.596 9 C 0.076 3.924 10 C 0.092 3.908 11 C 0.160 3.840 12 N -0.606 5.606 13 C -0.223 4.223 14 H 0.082 0.918 15 C -0.006 4.006 16 N -0.918 5.918 17 Si 0.912 3.088 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.279 1.279 21 C 0.108 3.892 22 C 0.124 3.876 23 C -0.071 4.071 24 N -0.302 5.302 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.184 0.816 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.033 0.967 36 H 0.072 0.928 37 H 0.254 0.746 38 H 0.047 0.953 39 H 0.035 0.965 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.241 -11.817 -12.701 21.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.007 3.993 3 N -0.142 5.142 4 C -0.057 4.057 5 C -0.292 4.292 6 C 0.377 3.623 7 O -0.421 6.421 8 N -0.328 5.328 9 C -0.067 4.067 10 C -0.012 4.012 11 C 0.034 3.966 12 N -0.333 5.333 13 C -0.351 4.351 14 H 0.100 0.900 15 C -0.203 4.203 16 N -0.565 5.565 17 Si 0.742 3.258 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.205 1.205 21 C -0.019 4.019 22 C -0.043 4.043 23 C -0.130 4.130 24 N -0.124 5.124 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.117 0.883 30 H 0.201 0.799 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.135 0.865 35 H 0.051 0.949 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.520 -12.035 -13.565 22.619 hybrid contribution 0.835 0.441 1.752 1.990 sum -12.685 -11.593 -11.813 20.853 Atomic orbital electron populations 1.22051 0.93520 1.02931 1.03786 1.21777 0.96335 0.77129 1.04078 1.48469 1.34771 1.10427 1.20567 1.23291 0.93199 0.94118 0.95141 1.20310 1.11037 0.94969 1.02838 1.17359 0.80566 0.82769 0.81597 1.90746 1.44066 1.41374 1.65879 1.47861 1.50397 1.29447 1.05091 1.21911 0.95970 0.91136 0.97719 1.24036 0.94304 0.89606 0.93211 1.22609 0.99091 0.89516 0.85425 1.45689 1.24729 1.26282 1.36599 1.19001 1.12597 0.99612 1.03848 0.90029 1.24833 0.98775 0.97481 0.99182 1.69834 1.23865 1.22949 1.39856 0.86102 0.77699 0.79047 0.82961 1.21618 1.21664 1.20481 1.22989 0.91887 0.97627 0.89444 1.22384 0.93479 0.95054 0.93350 1.20210 1.02572 0.90391 0.99790 1.77071 1.25262 0.96737 1.13348 0.91903 0.91003 0.90615 0.89550 0.88330 0.79876 0.92908 0.90151 0.91682 0.86536 0.94922 0.91002 0.93577 0.93508 0.94737 0.89967 0.91083 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.09 37.16 0.38 -0.59 16 2 C 0.13 0.80 7.21 -4.04 -0.03 0.77 16 3 N -0.36 -3.83 3.65 -60.81 -0.22 -4.05 16 4 C 0.09 1.02 9.17 -16.56 -0.15 0.87 16 5 C -0.28 -3.96 5.35 -105.07 -0.56 -4.52 16 6 C 0.59 10.14 7.35 -12.52 -0.09 10.05 16 7 O -0.54 -11.11 15.90 5.27 0.08 -11.03 16 8 N -0.60 -9.94 3.09 -177.01 -0.55 -10.49 16 9 C 0.08 0.98 7.74 59.84 0.46 1.45 16 10 C 0.09 1.85 4.41 -70.14 -0.31 1.54 16 11 C 0.16 3.74 6.83 -2.84 -0.02 3.72 16 12 N -0.61 -15.60 3.70 -177.87 -0.66 -16.25 16 13 C -0.22 -6.27 10.70 -15.06 -0.16 -6.43 16 14 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 15 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 16 N -0.92 -27.07 11.52 55.49 0.64 -26.43 16 17 Si 0.91 22.06 29.56 -169.99 -5.02 17.03 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.11 2.25 8.43 -2.96 -0.02 2.23 16 22 C 0.12 1.73 7.26 -82.02 -0.60 1.14 16 23 C -0.07 -0.85 9.93 36.01 0.36 -0.50 16 24 N -0.30 -3.96 12.34 33.90 0.42 -3.54 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.10 0.36 8.06 -51.93 -0.42 -0.06 16 30 H 0.18 1.49 6.36 -52.49 -0.33 1.15 16 31 H 0.05 0.59 7.35 -51.93 -0.38 0.21 16 32 H 0.08 1.13 6.15 -51.93 -0.32 0.81 16 33 H 0.06 0.71 5.92 -51.93 -0.31 0.40 16 34 H 0.12 2.55 7.20 -51.93 -0.37 2.18 16 35 H 0.03 0.75 6.71 -51.92 -0.35 0.40 16 36 H 0.07 1.89 7.39 -51.93 -0.38 1.50 16 37 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.04 0.68 6.92 -51.93 -0.36 0.32 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 1.07 7.75 -51.93 -0.40 0.66 16 LS Contribution 344.01 15.07 5.18 5.18 Total: -1.00 -34.75 344.01 -7.11 -41.85 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -6.13 Total: -1.74 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -0.85 Total: 9.47 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -0.37 Total: -60.77 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.75 -7.11 -41.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043980962.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.023 kcal (2) G-P(sol) polarization free energy of solvation -34.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds