Wall clock time and date at job start Tue Mar 31 2020 03:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.58613 * 2 1 4 4 C 1.53197 * 109.59086 * 239.57024 * 2 1 3 5 5 C 1.53045 * 109.31371 * 185.57620 * 4 2 1 6 6 H 1.09000 * 109.44660 * 181.37951 * 5 4 2 7 7 N 1.46499 * 109.46111 * 301.34611 * 5 4 2 8 8 C 1.36936 * 119.99846 * 205.06686 * 7 5 4 9 9 H 1.08000 * 120.00027 * 0.02562 * 8 7 5 10 10 C 1.38814 * 119.99760 * 180.02562 * 8 7 5 11 11 N 1.31617 * 120.00005 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99609 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47366 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.46973 * 119.99975 * 12 10 8 15 15 H 1.48499 * 109.47110 * 239.99846 * 12 10 8 16 16 C 1.53047 * 109.53527 * 61.36945 * 5 4 2 17 17 C 1.53197 * 109.30987 * 298.62967 * 16 5 4 18 18 N 1.46925 * 108.77309 * 54.64224 * 17 16 5 19 19 C 1.34776 * 120.63465 * 126.41449 * 18 17 16 20 20 O 1.21282 * 120.00063 * 174.20817 * 19 18 17 21 21 C 1.50695 * 119.99667 * 354.20536 * 19 18 17 22 22 N 1.46505 * 109.47319 * 180.02562 * 21 19 18 23 23 C 1.34943 * 126.03531 * 124.71359 * 22 21 19 24 24 C 1.35323 * 107.74310 * 179.84260 * 23 22 21 25 25 C 1.39873 * 107.91884 * 0.42116 * 24 23 22 26 26 N 1.30836 * 108.20000 * 359.74044 * 25 24 23 27 27 H 1.08993 * 109.47327 * 305.51568 * 1 2 3 28 28 H 1.09001 * 109.46779 * 65.51643 * 1 2 3 29 29 H 1.09003 * 109.47024 * 185.51340 * 1 2 3 30 30 H 1.09005 * 109.49587 * 65.62797 * 4 2 1 31 31 H 1.08998 * 109.49924 * 305.53151 * 4 2 1 32 32 H 0.97002 * 119.99987 * 25.07146 * 7 5 4 33 33 H 0.97004 * 119.99841 * 179.97438 * 11 10 8 34 34 H 1.08995 * 109.49965 * 58.58110 * 16 5 4 35 35 H 1.09000 * 109.49250 * 178.65128 * 16 5 4 36 36 H 1.08994 * 109.58211 * 174.42436 * 17 16 5 37 37 H 1.08996 * 109.58634 * 294.85298 * 17 16 5 38 38 H 1.09006 * 109.47366 * 300.00033 * 21 19 18 39 39 H 1.08996 * 109.47465 * 60.00051 * 21 19 18 40 40 H 1.07992 * 126.13068 * 359.97438 * 23 22 21 41 41 H 1.07996 * 126.04000 * 180.16190 * 24 23 22 42 42 H 1.07993 * 125.89950 * 179.71487 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7310 -1.2445 5 6 3.5676 -0.8494 -1.1690 6 1 3.9377 -1.3475 -2.0651 7 7 4.1571 0.4885 -1.0755 8 6 5.4410 0.7022 -1.5010 9 1 6.0188 -0.1154 -1.9059 10 6 5.9997 1.9698 -1.4119 11 7 5.2953 2.9663 -0.9189 12 14 7.7509 2.2615 -1.9931 13 1 8.3217 0.9889 -2.5029 14 1 7.7496 3.2734 -3.0800 15 1 8.5732 2.7543 -0.8590 16 6 3.9570 -1.6657 0.0657 17 6 3.4650 -0.9452 1.3251 18 7 2.0225 -0.6981 1.1954 19 6 1.1674 -1.1034 2.1550 20 8 -0.0056 -0.8024 2.0885 21 6 1.6687 -1.9307 3.3105 22 7 0.5538 -2.2413 4.2088 23 6 0.1706 -3.4741 4.6017 24 6 -0.8909 -3.3319 5.4288 25 6 -1.1718 -1.9660 5.5377 26 7 -0.3064 -1.3113 4.8067 27 1 -0.3633 0.5970 0.8364 28 1 -0.3633 0.4259 -0.9353 29 1 -0.3633 -1.0229 0.0987 30 1 1.7661 -0.1695 -2.1366 31 1 1.6031 -1.7270 -1.2892 32 1 3.6380 1.2229 -0.7121 33 1 5.6859 3.8520 -0.8563 34 1 3.4983 -2.6528 0.0087 35 1 5.0412 -1.7699 0.1057 36 1 3.6518 -1.5689 2.1992 37 1 3.9903 0.0039 1.4317 38 1 2.1001 -2.8580 2.9333 39 1 2.4294 -1.3713 3.8549 40 1 0.6301 -4.4068 4.3101 41 1 -1.4290 -4.1320 5.9153 42 1 -1.9660 -1.5275 6.1235 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044459607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:09 Heat of formation + Delta-G solvation = 80.518393 kcal Electronic energy + Delta-G solvation = -24090.411764 eV Core-core repulsion = 20687.614183 eV Total energy + Delta-G solvation = -3402.797581 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.23842 -40.16434 -37.48545 -34.25521 -33.78955 -32.19494 -31.95303 -30.07809 -29.18500 -27.63069 -26.78563 -24.16669 -23.52480 -22.29482 -21.17385 -20.97330 -19.86515 -18.34908 -17.32026 -17.26265 -16.83402 -15.89297 -15.37473 -14.84841 -14.49115 -14.40501 -13.98798 -13.96206 -13.59276 -13.40952 -13.33645 -13.07248 -12.77244 -12.69166 -12.28643 -12.03483 -11.92546 -11.51454 -11.21422 -10.97439 -10.85436 -10.68534 -10.60347 -10.51503 -10.27602 -10.00250 -9.70398 -9.57488 -9.01326 -8.90059 -8.55646 -8.22288 -7.04955 -5.84135 -3.13712 1.85921 2.35921 2.68502 2.87532 3.17635 3.37731 3.43709 3.46091 4.34725 4.52425 4.55892 4.71907 4.92200 5.03629 5.09899 5.25351 5.32233 5.43146 5.50417 5.52553 5.63805 5.68833 5.71014 5.84092 5.94606 5.95282 6.04381 6.11843 6.25323 6.35034 6.42683 6.52638 6.62451 6.66605 6.72641 6.77707 6.89887 7.00796 7.63175 7.63778 7.72122 8.32500 8.33974 9.45598 10.01768 10.36452 11.38147 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027895 B = 0.003650 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.517444 B = 7668.794652 C = 7896.653770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.148 3.852 3 H 0.081 0.919 4 C -0.133 4.133 5 C 0.173 3.827 6 H 0.051 0.949 7 N -0.722 5.722 8 C -0.241 4.241 9 H 0.071 0.929 10 C -0.011 4.011 11 N -0.931 5.931 12 Si 0.905 3.095 13 H -0.281 1.281 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.149 4.149 17 C 0.112 3.888 18 N -0.597 5.597 19 C 0.500 3.500 20 O -0.513 6.513 21 C 0.112 3.888 22 N -0.359 5.359 23 C 0.050 3.950 24 C -0.274 4.274 25 C 0.034 3.966 26 N -0.263 5.263 27 H 0.076 0.924 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.121 0.879 39 H 0.112 0.888 40 H 0.171 0.829 41 H 0.145 0.855 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.252 -14.001 8.947 18.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.046 3.954 3 H 0.099 0.901 4 C -0.172 4.172 5 C 0.063 3.937 6 H 0.069 0.931 7 N -0.365 5.365 8 C -0.372 4.372 9 H 0.089 0.911 10 C -0.208 4.208 11 N -0.579 5.579 12 Si 0.736 3.264 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.191 4.191 17 C -0.011 4.011 18 N -0.331 5.331 19 C 0.285 3.715 20 O -0.389 6.389 21 C -0.013 4.013 22 N -0.141 5.141 23 C -0.096 4.096 24 C -0.304 4.304 25 C -0.153 4.153 26 N -0.084 5.084 27 H 0.094 0.906 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.219 0.781 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.139 0.861 39 H 0.130 0.870 40 H 0.189 0.811 41 H 0.163 0.837 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -8.187 -12.650 8.323 17.214 hybrid contribution 0.821 -0.445 0.044 0.934 sum -7.367 -13.095 8.367 17.197 Atomic orbital electron populations 1.22182 0.93249 1.02846 1.00945 1.21257 0.94774 0.96093 0.83301 0.90087 1.22249 0.97369 1.00173 0.97387 1.20188 0.90424 0.88161 0.94923 0.93057 1.42529 1.13870 1.04666 1.75423 1.19265 0.89768 0.94176 1.33997 0.91129 1.24738 0.98300 0.95901 1.01836 1.69663 1.36422 1.00606 1.51189 0.86155 0.84625 0.77658 0.77936 1.20596 1.21916 1.21908 1.22524 1.01519 0.97862 0.97159 1.21782 0.79278 1.02012 0.98005 1.48165 1.07581 1.57264 1.20093 1.20330 0.86687 0.81198 0.83313 1.90804 1.16880 1.55653 1.75556 1.21638 0.86932 1.02480 0.90273 1.48170 1.25064 1.04281 1.36595 1.22516 0.98309 0.89677 0.99083 1.21453 1.02853 0.97164 1.08941 1.23899 0.99236 0.93035 0.99104 1.77530 1.03906 1.15314 1.11650 0.90566 0.93869 0.92434 0.90663 0.92171 0.78108 0.93490 0.93276 0.90642 0.91546 0.89304 0.86076 0.87008 0.81145 0.83717 0.80281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 7.61 37.15 0.28 -1.90 16 2 C 0.15 2.45 3.19 -67.60 -0.22 2.24 16 3 H 0.08 1.55 6.65 -51.93 -0.35 1.20 16 4 C -0.13 -2.12 5.07 -26.61 -0.13 -2.25 16 5 C 0.17 3.11 3.10 -67.88 -0.21 2.90 16 6 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 7 N -0.72 -16.47 4.31 -53.38 -0.23 -16.70 16 8 C -0.24 -6.21 9.93 -15.06 -0.15 -6.36 16 9 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 10 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 11 N -0.93 -26.96 13.06 55.49 0.72 -26.24 16 12 Si 0.90 21.52 29.55 -169.99 -5.02 16.49 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 C -0.15 -2.24 5.78 -26.61 -0.15 -2.40 16 17 C 0.11 1.60 6.09 -3.71 -0.02 1.58 16 18 N -0.60 -9.05 2.97 -165.22 -0.49 -9.54 16 19 C 0.50 7.58 7.53 -10.99 -0.08 7.50 16 20 O -0.51 -9.43 11.27 5.56 0.06 -9.37 16 21 C 0.11 1.28 5.35 -5.19 -0.03 1.26 16 22 N -0.36 -4.72 3.40 -62.55 -0.21 -4.93 16 23 C 0.05 0.52 11.45 -17.22 -0.20 0.32 16 24 C -0.27 -2.89 10.80 -40.01 -0.43 -3.32 16 25 C 0.03 0.42 12.03 -17.36 -0.21 0.21 16 26 N -0.26 -4.08 11.64 30.62 0.36 -3.73 16 27 H 0.08 1.37 6.54 -51.93 -0.34 1.03 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.96 6.96 -51.93 -0.36 0.60 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.38 9.46 6.07 -40.82 -0.25 9.21 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.07 0.71 5.93 -51.93 -0.31 0.40 16 37 H 0.09 1.56 7.74 -51.93 -0.40 1.16 16 38 H 0.12 0.96 7.85 -51.93 -0.41 0.55 16 39 H 0.11 1.15 7.71 -51.93 -0.40 0.75 16 40 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16 41 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 42 H 0.18 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 335.49 15.07 5.06 5.06 Total: -1.00 -32.62 335.49 -7.57 -40.19 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -6.16 Total: 9.41 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -1.65 Total: -0.64 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: 0.15 Total: -61.14 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.06 Total: -9.37 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.62 -7.57 -40.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044459607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.709 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds