Wall clock time and date at job start Tue Mar 31 2020 03:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.58777 * 2 1 4 4 C 1.53195 * 109.58801 * 120.28386 * 2 1 3 5 5 C 1.53038 * 109.31339 * 174.42545 * 4 2 1 6 6 H 1.08995 * 109.46500 * 58.63940 * 5 4 2 7 7 N 1.46501 * 109.45949 * 178.61655 * 5 4 2 8 8 C 1.36932 * 119.99903 * 205.00004 * 7 5 4 9 9 H 1.08002 * 119.99908 * 359.71965 * 8 7 5 10 10 C 1.38816 * 120.00158 * 179.97438 * 8 7 5 11 11 N 1.31619 * 119.99932 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99943 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47499 * 59.99770 * 12 10 8 14 14 H 1.48503 * 109.47068 * 179.97438 * 12 10 8 15 15 H 1.48509 * 109.47077 * 299.99538 * 12 10 8 16 16 C 1.53040 * 109.53591 * 298.63238 * 5 4 2 17 17 C 1.53196 * 109.31517 * 61.36377 * 16 5 4 18 18 N 1.46924 * 109.58496 * 239.57271 * 2 1 3 19 19 C 1.34780 * 120.63386 * 6.62429 * 18 2 1 20 20 O 1.21682 * 119.99370 * 7.33845 * 19 18 2 21 21 C 1.46755 * 120.00163 * 187.33947 * 19 18 2 22 22 C 1.36666 * 126.84691 * 26.36338 * 21 19 18 23 23 N 1.33317 * 107.78699 * 180.02562 * 22 21 19 24 24 C 1.30855 * 109.68692 * 359.97438 * 23 22 21 25 25 N 1.34496 * 109.16198 * 359.72997 * 24 23 22 26 26 C 1.46495 * 126.47561 * 180.28993 * 25 24 23 27 27 H 1.09001 * 109.47029 * 292.26668 * 1 2 3 28 28 H 1.08996 * 109.47305 * 52.27067 * 1 2 3 29 29 H 1.09000 * 109.46754 * 172.27219 * 1 2 3 30 30 H 1.08993 * 109.49917 * 54.46851 * 4 2 1 31 31 H 1.09002 * 109.49312 * 294.37613 * 4 2 1 32 32 H 0.97001 * 119.99898 * 24.99124 * 7 5 4 33 33 H 0.97000 * 119.99926 * 180.02562 * 11 10 8 34 34 H 1.08997 * 109.50163 * 181.32339 * 16 5 4 35 35 H 1.09007 * 109.49966 * 301.41804 * 16 5 4 36 36 H 1.08991 * 109.58672 * 185.57657 * 17 16 5 37 37 H 1.09000 * 109.58126 * 65.14980 * 17 16 5 38 38 H 1.08005 * 126.10616 * 0.02562 * 22 21 19 39 39 H 1.07994 * 125.41773 * 179.97438 * 24 23 22 40 40 H 1.09004 * 109.47362 * 264.81847 * 26 25 24 41 41 H 1.09004 * 109.46668 * 24.81202 * 26 25 24 42 42 H 1.08997 * 109.47627 * 144.81071 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 3.5676 -0.8464 1.1712 6 1 4.0062 0.1487 1.0989 7 7 4.0653 -1.5127 2.3773 8 6 5.3497 -1.2952 2.7991 9 1 5.9973 -0.6359 2.2401 10 6 5.8212 -1.9261 3.9422 11 7 5.0334 -2.7330 4.6209 12 14 7.5736 -1.6298 4.5171 13 1 7.7640 -0.1846 4.8006 14 1 7.8286 -2.4138 5.7523 15 1 8.5214 -2.0551 3.4559 16 6 3.9570 -1.6657 -0.0613 17 6 3.4650 -0.9486 -1.3226 18 7 2.0225 -0.7010 -1.1936 19 6 1.1674 -1.1089 -2.1522 20 8 -0.0038 -0.7828 -2.1015 21 6 1.6489 -1.9463 -3.2571 22 6 2.7214 -2.7931 -3.2365 23 7 2.8152 -3.3608 -4.4391 24 6 1.8582 -2.9155 -5.2126 25 7 1.1045 -2.0405 -4.5233 26 6 -0.0697 -1.3204 -5.0221 27 1 -0.3633 0.3894 0.9510 28 1 -0.3634 0.6288 -0.8127 29 1 -0.3633 -1.0183 -0.1382 30 1 1.6031 -1.7236 1.2935 31 1 1.7660 -0.1641 2.1370 32 1 3.4849 -2.1079 2.8771 33 1 5.3628 -3.1736 5.4198 34 1 5.0412 -1.7698 -0.1014 35 1 3.4983 -2.6528 -0.0019 36 1 3.6518 -1.5745 -2.1951 37 1 3.9903 0.0002 -1.4317 38 1 3.3761 -2.9707 -2.3961 39 1 1.6968 -3.2074 -6.2398 40 1 0.2320 -0.3346 -5.3763 41 1 -0.5174 -1.8802 -5.8433 42 1 -0.7973 -1.2106 -4.2180 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044663788.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:36 Heat of formation + Delta-G solvation = 49.240769 kcal Electronic energy + Delta-G solvation = -24129.627988 eV Core-core repulsion = 20725.474108 eV Total energy + Delta-G solvation = -3404.153881 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.32597 -41.24815 -38.72504 -36.27660 -35.03009 -34.26245 -33.69378 -31.20390 -30.48695 -28.49170 -27.95267 -26.08053 -24.86290 -24.13878 -22.90354 -22.05583 -21.39771 -20.19769 -19.10503 -18.29091 -17.56718 -17.19770 -16.71103 -16.65335 -16.14117 -15.66258 -15.52695 -15.37026 -14.91269 -14.80102 -14.61785 -14.33641 -14.00466 -13.75889 -13.60025 -13.29856 -13.23704 -13.04799 -12.80204 -12.61963 -12.51268 -12.20692 -12.02844 -11.90157 -11.67140 -11.39912 -11.23228 -10.87226 -10.69301 -10.30054 -9.78483 -9.49134 -8.98580 -7.90947 -5.19601 0.29093 1.43069 1.49977 1.52385 1.58206 1.79685 2.16895 2.17783 2.58845 3.37702 3.42800 3.68506 3.73523 3.86216 3.94587 4.03111 4.08652 4.11828 4.26101 4.33151 4.37518 4.40108 4.56180 4.62132 4.70568 4.71124 4.80149 4.83837 4.98939 5.05316 5.10303 5.15797 5.28245 5.38510 5.41852 5.51425 5.55909 5.67671 6.11398 6.30174 6.33178 6.84626 7.06006 7.36827 8.12454 8.35509 9.32474 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023821 B = 0.003914 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.154122 B = 7152.366807 C = 7991.111404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.155 3.845 3 H 0.090 0.910 4 C -0.124 4.124 5 C 0.174 3.826 6 H 0.050 0.950 7 N -0.737 5.737 8 C -0.236 4.236 9 H 0.079 0.921 10 C -0.076 4.076 11 N -0.972 5.972 12 Si 0.970 3.030 13 H -0.278 1.278 14 H -0.300 1.300 15 H -0.277 1.277 16 C -0.140 4.140 17 C 0.089 3.911 18 N -0.589 5.589 19 C 0.592 3.408 20 O -0.560 6.560 21 C -0.102 4.102 22 C 0.020 3.980 23 N -0.531 5.531 24 C 0.217 3.783 25 N -0.431 5.431 26 C 0.064 3.936 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.370 0.630 33 H 0.249 0.751 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.116 0.884 37 H 0.084 0.916 38 H 0.188 0.812 39 H 0.257 0.743 40 H 0.089 0.911 41 H 0.127 0.873 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.864 5.164 -22.057 24.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.052 3.948 3 H 0.107 0.893 4 C -0.163 4.163 5 C 0.065 3.935 6 H 0.068 0.932 7 N -0.376 5.376 8 C -0.368 4.368 9 H 0.097 0.903 10 C -0.268 4.268 11 N -0.623 5.623 12 Si 0.799 3.201 13 H -0.204 1.204 14 H -0.226 1.226 15 H -0.203 1.203 16 C -0.181 4.181 17 C -0.033 4.033 18 N -0.320 5.320 19 C 0.381 3.619 20 O -0.441 6.441 21 C -0.220 4.220 22 C -0.133 4.133 23 N -0.250 5.250 24 C -0.065 4.065 25 N -0.112 5.112 26 C -0.077 4.077 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.202 0.798 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.134 0.866 37 H 0.102 0.898 38 H 0.204 0.796 39 H 0.273 0.727 40 H 0.107 0.893 41 H 0.145 0.855 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.875 4.974 -22.300 24.891 hybrid contribution 0.276 0.056 1.376 1.404 sum -9.599 5.030 -20.924 23.564 Atomic orbital electron populations 1.22036 0.92396 1.02416 1.01312 1.21304 0.95642 0.95494 0.82377 0.89259 1.22162 0.95824 1.00618 0.97664 1.20401 0.92279 0.94768 0.86014 0.93218 1.42635 1.12104 1.54661 1.28204 1.19601 0.90074 1.21271 1.05858 0.90298 1.25528 1.01918 1.00454 0.98930 1.69817 1.37222 1.35325 1.19890 0.85262 0.80357 0.77399 0.77057 1.20392 1.22625 1.20339 1.22457 1.01217 0.99344 0.95091 1.22521 0.78733 1.02312 0.99746 1.47908 1.07817 1.56485 1.19836 1.16973 0.84993 0.78705 0.81188 1.90803 1.17623 1.58384 1.77254 1.20813 1.02227 1.09507 0.89432 1.23066 0.96843 0.96439 0.96958 1.70191 1.24298 1.27141 1.03327 1.26035 0.88635 0.90987 1.00804 1.45504 1.23959 1.32821 1.08869 1.22467 0.85048 0.98014 1.02188 0.92284 0.91006 0.93596 0.93039 0.90717 0.79815 0.94202 0.91337 0.93299 0.86623 0.89782 0.79553 0.72722 0.89289 0.85460 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.32 7.62 71.98 0.55 -2.77 16 2 C 0.15 4.20 3.49 44.98 0.16 4.36 16 3 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 4 C -0.12 -4.01 4.83 30.67 0.15 -3.86 16 5 C 0.17 6.49 2.73 45.02 0.12 6.61 16 6 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 7 N -0.74 -36.26 5.12 -322.82 -1.65 -37.91 16 8 C -0.24 -12.76 9.93 84.04 0.83 -11.93 16 9 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 10 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 11 N -0.97 -59.42 13.06 21.65 0.28 -59.13 16 12 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 13 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 14 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 16 C -0.14 -4.56 5.47 30.67 0.17 -4.40 16 17 C 0.09 2.25 5.81 86.36 0.50 2.75 16 18 N -0.59 -15.82 2.97 -799.60 -2.38 -18.20 16 19 C 0.59 16.47 7.33 86.47 0.63 17.10 16 20 O -0.56 -16.92 10.90 -4.29 -0.05 -16.97 16 21 C -0.10 -2.56 6.50 40.01 0.26 -2.30 16 22 C 0.02 0.51 9.62 84.10 0.81 1.32 16 23 N -0.53 -12.98 11.20 -199.56 -2.24 -15.22 16 24 C 0.22 3.64 12.52 180.33 2.26 5.89 16 25 N -0.43 -8.08 3.17 -539.83 -1.71 -9.79 16 26 C 0.06 0.74 10.85 127.77 1.39 2.13 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 1.94 6.67 -2.39 -0.02 1.93 16 29 H 0.04 1.39 6.83 -2.39 -0.02 1.38 16 30 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.37 19.97 7.80 -92.71 -0.72 19.25 16 33 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 34 H 0.07 2.36 8.14 -2.39 -0.02 2.35 16 35 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.12 2.71 3.21 -2.39 -0.01 2.70 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.19 4.71 5.88 -2.91 -0.02 4.70 16 39 H 0.26 1.48 8.06 -2.91 -0.02 1.46 16 40 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.13 0.50 8.13 -2.38 -0.02 0.48 16 42 H 0.08 1.38 6.62 -2.39 -0.02 1.36 16 Total: -1.00 -70.96 332.03 2.89 -68.07 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: 0.31 Total: 30.40 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 8.29 Total: 11.05 kcal Atomic # 7 Polarization: -132.55 SS G_CDS: -7.70 Total: -140.25 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.05 Total: -16.97 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -70.96 2.89 -68.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044663788.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.310 kcal (2) G-P(sol) polarization free energy of solvation -70.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds