Wall clock time and date at job start Tue Mar 31 2020 03:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.58942 * 2 1 4 4 C 1.53192 * 109.58556 * 239.57014 * 2 1 3 5 5 C 1.53043 * 109.31131 * 185.58309 * 4 2 1 6 6 H 1.08999 * 109.44584 * 301.34738 * 5 4 2 7 7 N 1.46495 * 109.45746 * 181.38797 * 5 4 2 8 8 C 1.36941 * 119.99953 * 154.93212 * 7 5 4 9 9 H 1.07998 * 120.00026 * 359.97438 * 8 7 5 10 10 C 1.38819 * 119.99798 * 180.02562 * 8 7 5 11 11 N 1.31621 * 119.99565 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 120.00122 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.46812 * 90.00475 * 12 10 8 14 14 H 1.48502 * 109.46843 * 210.00398 * 12 10 8 15 15 H 1.48495 * 109.46966 * 330.00485 * 12 10 8 16 16 C 1.53030 * 109.54172 * 61.36384 * 5 4 2 17 17 C 1.53200 * 109.31290 * 298.63624 * 16 5 4 18 18 N 1.46919 * 108.77470 * 54.63472 * 17 16 5 19 19 C 1.34779 * 120.63270 * 126.41288 * 18 17 16 20 20 O 1.21277 * 120.00011 * 185.02215 * 19 18 17 21 21 C 1.50705 * 119.99625 * 5.02474 * 19 18 17 22 22 C 1.50700 * 109.47027 * 179.97438 * 21 19 18 23 23 C 1.34666 * 126.59123 * 85.02183 * 22 21 19 24 24 N 1.34129 * 108.02282 * 179.97438 * 23 22 21 25 25 C 1.30499 * 109.25145 * 0.02562 * 24 23 22 26 26 N 1.35035 * 108.70433 * 359.76115 * 25 24 23 27 27 H 0.97003 * 126.40397 * 180.26615 * 26 25 24 28 28 H 1.09002 * 109.46889 * 304.09526 * 1 2 3 29 29 H 1.08999 * 109.47457 * 184.09551 * 1 2 3 30 30 H 1.09004 * 109.46913 * 64.08949 * 1 2 3 31 31 H 1.08999 * 109.49740 * 305.53063 * 4 2 1 32 32 H 1.08993 * 109.49559 * 65.62613 * 4 2 1 33 33 H 0.97002 * 120.00167 * 334.92552 * 7 5 4 34 34 H 0.97003 * 119.99442 * 179.97438 * 11 10 8 35 35 H 1.09003 * 109.49936 * 178.68648 * 16 5 4 36 36 H 1.08996 * 109.50173 * 58.58433 * 16 5 4 37 37 H 1.08994 * 109.58428 * 294.84550 * 17 16 5 38 38 H 1.09000 * 109.58297 * 174.42537 * 17 16 5 39 39 H 1.08996 * 109.47109 * 300.00137 * 21 19 18 40 40 H 1.09005 * 109.47209 * 60.00314 * 21 19 18 41 41 H 1.08001 * 125.98839 * 359.96919 * 23 22 21 42 42 H 1.08007 * 125.64661 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 -1.2445 5 6 3.5675 -0.8496 -1.1690 6 1 4.0059 0.1459 -1.0993 7 7 4.0651 -1.5189 -2.3733 8 6 5.3492 -1.3014 -2.7964 9 1 5.9950 -0.6362 -2.2425 10 6 5.8206 -1.9352 -3.9380 11 7 7.0547 -1.7257 -4.3449 12 14 4.7035 -3.0853 -4.8966 13 1 3.9679 -2.3132 -5.9300 14 1 5.5214 -4.1367 -5.5529 15 1 3.7332 -3.7200 -3.9688 16 6 3.9568 -1.6657 0.0656 17 6 3.4650 -0.9453 1.3250 18 7 2.0225 -0.6980 1.1954 19 6 1.1674 -1.1034 2.1550 20 8 -0.0281 -0.9755 1.9954 21 6 1.6967 -1.7156 3.4264 22 6 0.5441 -2.0793 4.3265 23 6 -0.1748 -3.2175 4.2901 24 7 -1.1054 -3.1516 5.2538 25 6 -0.9908 -2.0155 5.8856 26 7 0.0298 -1.3185 5.3416 27 1 0.3398 -0.4417 5.6176 28 1 -0.3633 0.5761 0.8510 29 1 -0.3634 -1.0250 0.0734 30 1 -0.3633 0.4491 -0.9244 31 1 1.6029 -1.7270 -1.2891 32 1 1.7660 -0.1696 -2.1365 33 1 3.4851 -2.1162 -2.8711 34 1 7.3842 -2.1689 -5.1424 35 1 5.0412 -1.7696 0.1060 36 1 3.4982 -2.6529 0.0087 37 1 3.9903 0.0037 1.4317 38 1 3.6518 -1.5690 2.1992 39 1 2.2684 -2.6122 3.1872 40 1 2.3414 -0.9982 3.9341 41 1 -0.0278 -4.0393 3.6049 42 1 -1.6078 -1.6885 6.7096 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044751452.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:54 Heat of formation + Delta-G solvation = 27.262920 kcal Electronic energy + Delta-G solvation = -23669.673134 eV Core-core repulsion = 20264.566223 eV Total energy + Delta-G solvation = -3405.106912 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.95770 -41.41955 -38.76084 -36.25000 -34.59400 -33.83034 -33.42098 -32.32355 -31.45124 -28.59385 -27.75279 -25.88373 -24.23281 -23.31545 -22.43626 -21.86678 -21.56378 -20.30451 -19.49407 -18.66355 -17.80723 -16.96659 -16.71719 -16.57528 -15.93604 -15.71708 -15.34199 -15.14458 -15.00429 -14.65508 -14.43828 -14.32476 -14.24151 -13.86996 -13.77863 -13.39390 -13.14224 -13.02509 -12.97100 -12.63727 -12.54550 -12.12518 -12.02768 -11.90478 -11.77546 -11.34838 -10.95455 -10.93574 -10.91945 -10.09531 -9.54915 -9.30354 -9.27664 -8.01009 -5.33386 1.07450 1.38835 1.40129 1.47451 1.66697 2.01037 2.28083 2.36534 2.49018 3.30740 3.49309 3.61788 3.71008 3.93218 4.02651 4.04271 4.12922 4.14845 4.27783 4.35514 4.55913 4.58622 4.60122 4.61945 4.66168 4.70574 4.82363 4.85684 5.02561 5.07478 5.15287 5.26560 5.28218 5.42760 5.52076 5.72509 5.79636 5.79946 6.23567 6.49379 6.61834 7.09498 7.16360 7.25472 7.86792 8.04181 9.20384 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029285 B = 0.003321 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.897079 B = 8428.660905 C = 8546.831007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.152 3.848 3 H 0.084 0.916 4 C -0.129 4.129 5 C 0.175 3.825 6 H 0.050 0.950 7 N -0.754 5.754 8 C -0.221 4.221 9 H 0.063 0.937 10 C -0.064 4.064 11 N -0.984 5.984 12 Si 0.949 3.051 13 H -0.282 1.282 14 H -0.299 1.299 15 H -0.256 1.256 16 C -0.145 4.145 17 C 0.114 3.886 18 N -0.604 5.604 19 C 0.511 3.489 20 O -0.561 6.561 21 C -0.062 4.062 22 C -0.001 4.001 23 C -0.043 4.043 24 N -0.542 5.542 25 C 0.189 3.811 26 N -0.553 5.553 27 H 0.434 0.566 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.362 0.638 34 H 0.256 0.744 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.161 0.839 42 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.669 3.969 21.557 25.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.048 3.952 3 H 0.102 0.898 4 C -0.168 4.168 5 C 0.068 3.932 6 H 0.068 0.932 7 N -0.396 5.396 8 C -0.352 4.352 9 H 0.081 0.919 10 C -0.255 4.255 11 N -0.635 5.635 12 Si 0.778 3.222 13 H -0.208 1.208 14 H -0.226 1.226 15 H -0.181 1.181 16 C -0.186 4.186 17 C -0.008 4.008 18 N -0.338 5.338 19 C 0.300 3.700 20 O -0.440 6.440 21 C -0.102 4.102 22 C -0.118 4.118 23 C -0.190 4.190 24 N -0.262 5.262 25 C -0.095 4.095 26 N -0.158 5.158 27 H 0.275 0.725 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.195 0.805 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.178 0.822 42 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -13.672 3.489 21.625 25.821 hybrid contribution 0.561 0.066 -1.405 1.514 sum -13.110 3.555 20.220 24.359 Atomic orbital electron populations 1.22016 0.92938 1.02306 1.00460 1.21202 0.95103 0.95471 0.83391 0.89790 1.22210 0.95395 1.00926 0.98229 1.20409 0.92267 0.94927 0.85638 0.93226 1.42875 1.11614 1.55140 1.30012 1.19035 0.88924 1.21081 1.06198 0.91859 1.25421 0.97558 1.02653 0.99878 1.69867 1.17360 1.49197 1.27042 0.85494 0.78631 0.79028 0.79095 1.20808 1.22556 1.18079 1.22451 1.01204 0.99537 0.95383 1.21929 0.78560 1.01719 0.98628 1.48259 1.08153 1.57489 1.19849 1.20940 0.86093 0.77687 0.85248 1.90787 1.17005 1.56240 1.80014 1.20218 0.94747 1.04736 0.90521 1.20634 1.01792 0.94019 0.95380 1.22175 0.96402 0.99652 1.00820 1.70215 1.24585 1.21369 1.10022 1.25626 0.92872 0.89058 1.01963 1.43172 1.27136 1.18931 1.26533 0.72542 0.92118 0.93119 0.93177 0.92567 0.90827 0.80550 0.93492 0.91687 0.92764 0.89655 0.86581 0.84777 0.84800 0.82196 0.74085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.04 7.59 71.98 0.55 -2.49 16 2 C 0.15 3.63 3.49 44.97 0.16 3.79 16 3 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 4 C -0.13 -3.67 4.84 30.67 0.15 -3.52 16 5 C 0.18 5.90 2.73 45.02 0.12 6.02 16 6 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 7 N -0.75 -33.27 4.92 -322.83 -1.59 -34.86 16 8 C -0.22 -12.01 10.41 84.03 0.87 -11.13 16 9 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 10 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 11 N -0.98 -61.85 13.97 21.65 0.30 -61.55 16 12 Si 0.95 45.10 27.74 68.60 1.90 47.00 16 13 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 14 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 15 H -0.26 -11.09 6.52 99.48 0.65 -10.45 16 16 C -0.15 -4.03 5.66 30.67 0.17 -3.85 16 17 C 0.11 2.04 6.33 86.37 0.55 2.58 16 18 N -0.60 -12.55 2.97 -795.02 -2.36 -14.92 16 19 C 0.51 10.79 7.60 87.66 0.67 11.46 16 20 O -0.56 -16.01 11.44 -3.02 -0.03 -16.04 16 21 C -0.06 -0.82 4.66 29.10 0.14 -0.69 16 22 C 0.00 -0.02 5.73 40.95 0.23 0.21 16 23 C -0.04 -1.03 11.79 83.52 0.98 -0.05 16 24 N -0.54 -13.51 11.25 -200.31 -2.25 -15.76 16 25 C 0.19 3.06 13.04 180.27 2.35 5.41 16 26 N -0.55 -7.48 6.15 -186.49 -1.15 -8.63 16 27 H 0.43 2.71 8.96 -92.71 -0.83 1.88 16 28 H 0.06 1.62 6.77 -2.39 -0.02 1.60 16 29 H 0.05 1.50 6.73 -2.39 -0.02 1.48 16 30 H 0.05 1.15 8.14 -2.38 -0.02 1.14 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.36 15.80 5.66 -92.71 -0.52 15.28 16 34 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.12 1.28 5.96 -2.39 -0.01 1.27 16 39 H 0.13 1.39 7.48 -2.39 -0.02 1.38 16 40 H 0.13 0.88 8.11 -2.38 -0.02 0.86 16 41 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 42 H 0.24 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -77.97 335.78 1.85 -76.12 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: -0.37 Total: 24.09 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 7.41 Total: 4.54 kcal Atomic # 7 Polarization: -128.66 SS G_CDS: -7.05 Total: -135.71 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.03 Total: -16.04 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.00 kcal Total: -77.97 1.85 -76.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044751452.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.384 kcal (2) G-P(sol) polarization free energy of solvation -77.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds