Wall clock time and date at job start Tue Mar 31 2020 03:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.70498 * 2 1 4 4 C 1.52761 * 109.50877 * 239.87987 * 2 1 3 5 5 C 1.53040 * 109.38441 * 185.70961 * 4 2 1 6 6 H 1.08999 * 109.44644 * 301.22726 * 5 4 2 7 7 N 1.46492 * 109.46171 * 181.25925 * 5 4 2 8 8 C 1.36941 * 120.00147 * 154.92568 * 7 5 4 9 9 H 1.08003 * 119.99467 * 0.02562 * 8 7 5 10 10 C 1.38809 * 120.00048 * 180.02562 * 8 7 5 11 11 N 1.31621 * 119.99787 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00190 * 0.02562 * 10 8 7 13 13 H 1.48493 * 109.47164 * 89.99704 * 12 10 8 14 14 H 1.48501 * 109.47077 * 210.00069 * 12 10 8 15 15 H 1.48498 * 109.47013 * 329.99827 * 12 10 8 16 16 C 1.53037 * 109.53785 * 61.23823 * 5 4 2 17 17 C 1.53200 * 109.31557 * 298.63669 * 16 5 4 18 18 N 1.46926 * 108.77334 * 54.63538 * 17 16 5 19 19 C 1.34777 * 120.62935 * 126.37223 * 18 17 16 20 20 O 1.21278 * 119.99541 * 174.20201 * 19 18 17 21 21 C 1.50692 * 119.99940 * 354.19397 * 19 18 17 22 22 C 1.50701 * 109.47262 * 180.02562 * 21 19 18 23 23 N 1.30503 * 125.64732 * 304.98304 * 22 21 19 24 24 C 1.34126 * 109.25476 * 180.02562 * 23 22 21 25 25 C 1.34671 * 108.02125 * 359.97438 * 24 23 22 26 26 N 1.35041 * 125.65373 * 124.99725 * 22 21 19 27 27 H 0.97003 * 126.39448 * 359.97438 * 26 22 21 28 28 H 1.09004 * 109.46700 * 305.44758 * 1 2 3 29 29 H 1.08994 * 109.46852 * 65.44355 * 1 2 3 30 30 H 1.08996 * 109.47177 * 185.44812 * 1 2 3 31 31 H 1.08996 * 109.56152 * 65.67185 * 4 2 1 32 32 H 1.09001 * 109.35898 * 305.61629 * 4 2 1 33 33 H 0.96998 * 120.00116 * 334.93322 * 7 5 4 34 34 H 0.97001 * 120.00233 * 180.02562 * 11 10 8 35 35 H 1.09007 * 109.49799 * 178.68787 * 16 5 4 36 36 H 1.08995 * 109.49939 * 58.59069 * 16 5 4 37 37 H 1.09005 * 109.58275 * 294.84961 * 17 16 5 38 38 H 1.08999 * 109.58335 * 174.42385 * 17 16 5 39 39 H 1.09006 * 109.47057 * 60.00244 * 21 19 18 40 40 H 1.09001 * 109.47706 * 300.00458 * 21 19 18 41 41 H 1.07999 * 125.99381 * 179.97438 * 24 23 22 42 42 H 1.08005 * 126.59211 * 180.26069 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0402 -0.7226 -1.2455 5 6 3.5639 -0.8463 -1.1726 6 1 4.0056 0.1474 -1.0995 7 7 4.0578 -1.5123 -2.3803 8 6 5.3420 -1.2971 -2.8044 9 1 5.9907 -0.6367 -2.2481 10 6 5.8098 -1.9277 -3.9490 11 7 7.0443 -1.7212 -4.3563 12 14 4.6874 -3.0694 -4.9114 13 1 3.9536 -2.2902 -5.9407 14 1 5.5007 -4.1210 -5.5731 15 1 3.7157 -3.7046 -3.9854 16 6 3.9523 -1.6688 0.0582 17 6 3.4644 -0.9519 1.3212 18 7 2.0225 -0.6996 1.1946 19 6 1.1673 -1.1069 2.1533 20 8 -0.0047 -0.8017 2.0898 21 6 1.6674 -1.9416 3.3039 22 6 0.5208 -2.2619 4.2279 23 7 -0.2721 -1.3890 4.7870 24 6 -1.1743 -2.0317 5.5432 25 6 -0.9318 -3.3530 5.4487 26 7 0.1436 -3.4995 4.6146 27 1 0.5574 -4.3362 4.3505 28 1 -0.3633 0.5960 0.8372 29 1 -0.3633 0.4271 -0.9347 30 1 -0.3633 -1.0230 0.0976 31 1 1.7633 -0.1566 -2.1349 32 1 1.5964 -1.7170 -1.2936 33 1 3.4752 -2.1056 -2.8797 34 1 7.3711 -2.1616 -5.1564 35 1 5.0363 -1.7762 0.0967 36 1 3.4905 -2.6542 -0.0022 37 1 3.9929 -0.0049 1.4310 38 1 3.6504 -1.5799 2.1925 39 1 2.4307 -1.3873 3.8501 40 1 2.0952 -2.8684 2.9216 41 1 -1.9581 -1.5705 6.1259 42 1 -1.4825 -4.1451 5.9344 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044794635.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:02 Heat of formation + Delta-G solvation = 53.532653 kcal Electronic energy + Delta-G solvation = -23686.349835 eV Core-core repulsion = 20282.382065 eV Total energy + Delta-G solvation = -3403.967770 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.20396 -40.33008 -37.47686 -34.64860 -33.46227 -32.62116 -31.97361 -31.45998 -29.81615 -27.65776 -26.93914 -24.34359 -22.74929 -22.25521 -21.68827 -20.78338 -20.18524 -19.02552 -18.01440 -17.58857 -16.86172 -15.98581 -15.52523 -14.96863 -14.78813 -14.41844 -14.19003 -14.04449 -13.78828 -13.69308 -13.38547 -13.16697 -12.91827 -12.62137 -12.34432 -12.26862 -12.00304 -11.83222 -11.46054 -11.03976 -10.97322 -10.83587 -10.56269 -10.31683 -10.15465 -10.06408 -9.94473 -9.63988 -9.00884 -8.97653 -8.56446 -8.42674 -7.33234 -5.82242 -3.18161 1.83528 2.68537 2.73126 3.01818 3.24998 3.33422 3.36845 3.41834 4.13247 4.53918 4.54426 4.68982 4.94162 4.98465 5.00796 5.09565 5.16390 5.26138 5.29111 5.41532 5.49307 5.52568 5.55282 5.74592 5.80468 5.90420 5.92280 6.03161 6.04585 6.24555 6.34157 6.36985 6.46340 6.59136 6.66969 6.80098 6.92754 7.13114 7.52037 7.93473 7.99055 8.29580 8.36949 9.15107 9.87963 10.07664 11.35977 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028151 B = 0.003381 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.397982 B = 8279.030987 C = 8498.457992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.151 3.849 3 H 0.073 0.927 4 C -0.139 4.139 5 C 0.183 3.817 6 H 0.057 0.943 7 N -0.748 5.748 8 C -0.244 4.244 9 H 0.091 0.909 10 C 0.005 3.995 11 N -0.933 5.933 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.278 1.278 16 C -0.152 4.152 17 C 0.106 3.894 18 N -0.606 5.606 19 C 0.520 3.480 20 O -0.513 6.513 21 C -0.059 4.059 22 C 0.222 3.778 23 N -0.461 5.461 24 C -0.027 4.027 25 C -0.059 4.059 26 N -0.567 5.567 27 H 0.417 0.583 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.361 0.639 34 H 0.260 0.740 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.118 0.882 40 H 0.106 0.894 41 H 0.168 0.832 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.800 -3.161 18.581 22.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.048 3.952 3 H 0.091 0.909 4 C -0.178 4.178 5 C 0.074 3.926 6 H 0.075 0.925 7 N -0.390 5.390 8 C -0.374 4.374 9 H 0.109 0.891 10 C -0.191 4.191 11 N -0.581 5.581 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.218 1.218 15 H -0.204 1.204 16 C -0.193 4.193 17 C -0.017 4.017 18 N -0.341 5.341 19 C 0.306 3.694 20 O -0.388 6.388 21 C -0.100 4.100 22 C -0.042 4.042 23 N -0.180 5.180 24 C -0.176 4.176 25 C -0.193 4.193 26 N -0.171 5.171 27 H 0.255 0.745 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.193 0.807 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.136 0.864 40 H 0.124 0.876 41 H 0.185 0.815 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -13.165 -2.015 18.415 22.727 hybrid contribution -0.400 -2.402 -0.801 2.564 sum -13.565 -4.417 17.614 22.666 Atomic orbital electron populations 1.22190 0.92886 1.03282 1.00962 1.21156 0.95363 0.95236 0.83491 0.90947 1.22275 0.97492 1.00948 0.97098 1.20138 0.90839 0.95386 0.86286 0.92456 1.42801 1.13130 1.55148 1.27926 1.19067 0.87658 1.23500 1.07179 0.89141 1.24673 0.96092 1.00121 0.98193 1.69699 1.15159 1.47273 1.25965 0.86561 0.80347 0.81234 0.80414 1.21056 1.21782 1.20429 1.22648 1.02179 0.99692 0.94771 1.21882 0.79656 1.00840 0.99334 1.48180 1.07518 1.58038 1.20366 1.19984 0.86243 0.80468 0.82749 1.90794 1.16983 1.55501 1.75527 1.20057 0.94337 1.01946 0.93708 1.22399 0.99834 0.80376 1.01629 1.70256 1.05148 1.32296 1.10292 1.22378 1.01546 0.90514 1.03169 1.22715 0.94534 0.99959 1.02097 1.43243 1.26380 1.09434 1.38007 0.74519 0.90334 0.93861 0.92180 0.90511 0.92068 0.80675 0.93030 0.90119 0.92391 0.91003 0.90474 0.86439 0.87628 0.81458 0.80722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 7.60 37.16 0.28 -1.63 16 2 C 0.15 2.07 3.48 -67.81 -0.24 1.83 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.14 -2.12 4.81 -26.83 -0.13 -2.25 16 5 C 0.18 3.23 2.73 -67.89 -0.19 3.04 16 6 H 0.06 1.05 8.08 -51.93 -0.42 0.64 16 7 N -0.75 -16.79 4.92 -53.39 -0.26 -17.05 16 8 C -0.24 -6.58 10.41 -15.06 -0.16 -6.74 16 9 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 10 C 0.01 0.14 5.50 -17.43 -0.10 0.05 16 11 N -0.93 -28.65 13.97 55.49 0.78 -27.87 16 12 Si 0.88 21.66 27.74 -169.99 -4.71 16.95 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 15 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 16 C -0.15 -2.26 5.66 -26.61 -0.15 -2.41 16 17 C 0.11 1.20 6.35 -3.71 -0.02 1.18 16 18 N -0.61 -7.73 2.98 -165.46 -0.49 -8.22 16 19 C 0.52 6.90 7.49 -10.99 -0.08 6.82 16 20 O -0.51 -8.48 11.13 5.56 0.06 -8.42 16 21 C -0.06 -0.57 4.68 -29.04 -0.14 -0.71 16 22 C 0.22 2.58 6.96 -155.41 -1.08 1.50 16 23 N -0.46 -6.55 10.58 -10.82 -0.11 -6.66 16 24 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 25 C -0.06 -0.51 12.04 -16.56 -0.20 -0.71 16 26 N -0.57 -4.90 6.15 -10.23 -0.06 -4.97 16 27 H 0.42 2.19 8.96 -40.82 -0.37 1.83 16 28 H 0.08 1.21 6.53 -51.93 -0.34 0.87 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.93 6.97 -51.93 -0.36 0.57 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.36 8.10 5.66 -40.82 -0.23 7.87 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.65 5.93 -51.93 -0.31 0.34 16 39 H 0.12 0.94 7.71 -51.93 -0.40 0.54 16 40 H 0.11 0.74 7.93 -51.93 -0.41 0.33 16 41 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.18 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 335.02 15.07 5.05 5.05 Total: -1.00 -35.22 335.02 -8.40 -43.63 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -6.23 Total: 8.13 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -2.41 Total: -0.56 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: -0.16 Total: -64.78 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.06 Total: -8.42 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.95 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.22 -8.40 -43.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044794635.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.158 kcal (2) G-P(sol) polarization free energy of solvation -35.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds