Wall clock time and date at job start Tue Mar 31 2020 03:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.57876 * 2 1 4 4 C 1.53192 * 109.58752 * 120.42737 * 2 1 3 5 5 C 1.53042 * 109.30866 * 174.42325 * 4 2 1 6 6 H 1.08993 * 109.46047 * 58.64343 * 5 4 2 7 7 N 1.46498 * 109.45645 * 178.61778 * 5 4 2 8 8 C 1.36936 * 119.99854 * 205.00101 * 7 5 4 9 9 H 1.08002 * 120.00088 * 359.97438 * 8 7 5 10 10 C 1.38815 * 120.00181 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00075 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99950 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47263 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.46866 * 120.00724 * 12 10 8 15 15 H 1.48505 * 109.46963 * 240.00107 * 12 10 8 16 16 C 1.53044 * 109.53769 * 298.63539 * 5 4 2 17 17 C 1.52756 * 109.38175 * 61.24351 * 16 5 4 18 18 N 1.46921 * 109.58512 * 239.72099 * 2 1 3 19 19 C 1.34783 * 120.63357 * 6.57428 * 18 2 1 20 20 O 1.21277 * 119.99545 * 354.95295 * 19 18 2 21 21 C 1.50696 * 120.00135 * 174.66754 * 19 18 2 22 22 N 1.46493 * 109.47190 * 180.27870 * 21 19 18 23 23 C 1.36885 * 126.39893 * 90.00075 * 22 21 19 24 24 C 1.34665 * 106.81984 * 180.02562 * 23 22 21 25 25 N 1.34132 * 108.02383 * 359.97438 * 24 23 22 26 26 C 1.30503 * 109.25218 * 359.72601 * 25 24 23 27 27 H 1.08999 * 109.46739 * 175.95792 * 1 2 3 28 28 H 1.08998 * 109.47299 * 295.95209 * 1 2 3 29 29 H 1.08997 * 109.47488 * 55.95627 * 1 2 3 30 30 H 1.08996 * 109.49542 * 294.37492 * 4 2 1 31 31 H 1.09005 * 109.49739 * 54.47197 * 4 2 1 32 32 H 0.97001 * 120.00424 * 24.99285 * 7 5 4 33 33 H 0.96996 * 120.00063 * 179.97438 * 11 10 8 34 34 H 1.09000 * 109.49553 * 181.31866 * 16 5 4 35 35 H 1.08998 * 109.49370 * 301.38268 * 16 5 4 36 36 H 1.09005 * 109.50734 * 185.70385 * 17 16 5 37 37 H 1.09000 * 109.43660 * 65.42641 * 17 16 5 38 38 H 1.09004 * 109.47518 * 300.28192 * 21 19 18 39 39 H 1.09004 * 109.46768 * 60.27841 * 21 19 18 40 40 H 1.07995 * 126.58924 * 359.96995 * 23 22 21 41 41 H 1.08001 * 125.99368 * 180.02562 * 24 23 22 42 42 H 1.08003 * 125.65242 * 180.28493 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7309 1.2445 5 6 3.5676 -0.8494 1.1690 6 1 4.0061 0.1460 1.0992 7 7 4.0653 -1.5187 2.3733 8 6 5.3498 -1.3022 2.7956 9 1 5.9961 -0.6383 2.2406 10 6 5.8213 -1.9359 3.9371 11 7 5.0339 -2.7454 4.6132 12 14 7.5738 -1.6411 4.5127 13 1 8.2471 -0.6968 3.5854 14 1 7.5548 -1.0624 5.8803 15 1 8.3122 -2.9294 4.5306 16 6 3.9570 -1.6655 -0.0658 17 6 3.4644 -0.9501 -1.3223 18 7 2.0225 -0.6979 -1.1954 19 6 1.1673 -1.1042 -2.1546 20 8 -0.0281 -0.9772 -1.9945 21 6 1.6967 -1.7104 -3.4287 22 7 0.5764 -2.0607 -4.3051 23 6 0.0002 -1.2538 -5.2488 24 6 -0.9889 -1.9670 -5.8201 25 7 -1.0156 -3.1769 -5.2415 26 6 -0.0768 -3.2423 -4.3373 27 1 -0.3633 -1.0251 -0.0724 28 1 -0.3634 0.4497 0.9240 29 1 -0.3634 0.5753 -0.8515 30 1 1.7661 -0.1695 2.1365 31 1 1.6030 -1.7270 1.2891 32 1 3.4850 -2.1152 2.8717 33 1 5.3635 -3.1886 5.4106 34 1 5.0413 -1.7693 -0.1061 35 1 3.4988 -2.6529 -0.0084 36 1 3.6504 -1.5768 -2.1946 37 1 3.9928 -0.0030 -1.4311 38 1 2.3414 -0.9906 -3.9331 39 1 2.2687 -2.6081 -3.1936 40 1 0.2837 -0.2396 -5.4884 41 1 -1.6451 -1.6253 -6.6069 42 1 0.1398 -4.0984 -3.7156 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044876689.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:20 Heat of formation + Delta-G solvation = 61.291399 kcal Electronic energy + Delta-G solvation = -23680.523840 eV Core-core repulsion = 20276.892514 eV Total energy + Delta-G solvation = -3403.631326 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.19572 -40.49065 -37.60400 -34.66409 -34.42656 -32.63094 -32.06276 -29.66400 -29.46383 -27.90533 -26.99691 -24.41234 -23.07256 -22.40121 -21.44831 -21.09021 -20.30101 -19.27416 -17.62118 -17.28706 -17.09962 -16.03602 -15.54208 -15.04027 -14.88041 -14.54688 -14.11801 -14.02072 -13.78812 -13.61998 -13.56558 -13.30554 -13.22291 -12.88952 -12.49125 -12.23982 -12.16417 -11.71168 -11.53038 -11.00396 -10.93205 -10.91770 -10.58253 -10.30478 -10.12024 -10.07158 -9.92265 -9.79936 -9.08467 -9.01337 -8.61780 -8.59186 -7.08136 -5.86486 -3.16460 1.85466 2.33684 2.45077 2.96991 3.12802 3.35783 3.41169 3.43960 4.16017 4.34150 4.48765 4.62444 4.63190 4.69964 4.84704 5.02825 5.12619 5.19138 5.31339 5.34173 5.41303 5.50798 5.56572 5.66836 5.76570 5.89390 6.00459 6.09620 6.13626 6.20091 6.31440 6.34000 6.40721 6.61273 6.62098 6.75842 6.90738 6.99541 7.28731 7.59707 7.96278 7.98631 8.31371 9.42877 9.99439 10.33815 11.35916 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.032016 B = 0.003182 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.346890 B = 8796.846069 C = 9106.109669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.148 3.852 3 H 0.073 0.927 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.048 0.952 7 N -0.724 5.724 8 C -0.242 4.242 9 H 0.071 0.929 10 C -0.012 4.012 11 N -0.931 5.931 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.291 1.291 16 C -0.153 4.153 17 C 0.105 3.895 18 N -0.598 5.598 19 C 0.496 3.504 20 O -0.519 6.519 21 C 0.083 3.917 22 N -0.444 5.444 23 C -0.047 4.047 24 C -0.032 4.032 25 N -0.496 5.496 26 C 0.194 3.806 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.384 0.616 33 H 0.256 0.744 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.170 0.830 41 H 0.168 0.832 42 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.607 4.714 -17.625 19.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.045 3.955 3 H 0.091 0.909 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.066 0.934 7 N -0.364 5.364 8 C -0.373 4.373 9 H 0.089 0.911 10 C -0.208 4.208 11 N -0.579 5.579 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.218 1.218 15 H -0.218 1.218 16 C -0.194 4.194 17 C -0.018 4.018 18 N -0.332 5.332 19 C 0.281 3.719 20 O -0.395 6.395 21 C -0.044 4.044 22 N -0.126 5.126 23 C -0.180 4.180 24 C -0.179 4.179 25 N -0.214 5.214 26 C -0.089 4.089 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.218 0.782 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.188 0.812 41 H 0.185 0.815 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -6.500 4.256 -17.585 19.225 hybrid contribution 1.628 0.535 0.890 1.931 sum -4.872 4.791 -16.695 18.039 Atomic orbital electron populations 1.22192 0.92758 1.03665 1.00522 1.21367 0.95445 0.95044 0.83611 0.90924 1.22308 0.97566 1.01020 0.96533 1.20150 0.90864 0.94976 0.87137 0.93397 1.42435 1.12958 1.54264 1.26722 1.19257 0.89044 1.22378 1.06670 0.91102 1.24765 0.98202 0.99729 0.98137 1.69669 1.35347 1.33331 1.19505 0.86140 0.84397 0.77311 0.78434 1.20538 1.21822 1.21838 1.22626 1.01937 1.00109 0.94734 1.21847 0.79375 1.00825 0.99774 1.48228 1.07658 1.57192 1.20162 1.20596 0.87041 0.79370 0.84883 1.90842 1.15218 1.54599 1.78848 1.21836 0.88227 1.03946 0.90387 1.45037 1.26816 1.12814 1.27968 1.22639 1.00600 0.98510 0.96225 1.22229 1.00510 0.91361 1.03783 1.70289 1.19697 1.21403 1.10034 1.24961 0.92862 0.90181 1.00846 0.91157 0.93668 0.91586 0.90484 0.91725 0.78219 0.93454 0.90328 0.92097 0.90724 0.91009 0.86234 0.85925 0.81226 0.81513 0.78149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 7.59 37.16 0.28 -1.54 16 2 C 0.15 1.93 3.49 -67.60 -0.24 1.69 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.14 -2.08 4.84 -26.61 -0.13 -2.21 16 5 C 0.18 3.14 2.73 -67.89 -0.19 2.95 16 6 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 7 N -0.72 -16.88 5.12 -53.38 -0.27 -17.15 16 8 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 9 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 10 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 11 N -0.93 -27.22 13.06 55.49 0.72 -26.49 16 12 Si 0.91 21.48 29.55 -169.99 -5.02 16.46 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 C -0.15 -2.22 5.64 -26.83 -0.15 -2.37 16 17 C 0.10 1.06 6.30 -3.93 -0.02 1.03 16 18 N -0.60 -6.89 2.98 -165.48 -0.49 -7.38 16 19 C 0.50 5.77 7.67 -10.98 -0.08 5.68 16 20 O -0.52 -7.86 11.83 5.56 0.07 -7.80 16 21 C 0.08 0.67 5.04 -5.20 -0.03 0.64 16 22 N -0.44 -4.63 2.24 -119.87 -0.27 -4.90 16 23 C -0.05 -0.49 11.58 -16.56 -0.19 -0.68 16 24 C -0.03 -0.37 11.87 -17.81 -0.21 -0.58 16 25 N -0.50 -6.81 11.25 -14.66 -0.16 -6.98 16 26 C 0.19 2.27 12.56 -90.36 -1.14 1.14 16 27 H 0.07 1.08 6.73 -51.93 -0.35 0.73 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.94 6.77 -51.93 -0.35 0.59 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.38 9.75 7.80 -40.82 -0.32 9.43 16 33 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.52 5.97 -51.93 -0.31 0.21 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.12 0.65 8.12 -51.93 -0.42 0.23 16 39 H 0.12 0.73 7.47 -51.93 -0.39 0.35 16 40 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 42 H 0.20 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 340.34 15.07 5.13 5.13 Total: -1.00 -33.21 340.34 -8.97 -42.19 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -6.33 Total: 8.06 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -2.34 Total: -1.13 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -0.48 Total: -62.90 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.07 Total: -7.80 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.21 -8.97 -42.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044876689.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.481 kcal (2) G-P(sol) polarization free energy of solvation -33.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds