Wall clock time and date at job start Tue Mar 31 2020 03:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.57876 * 2 1 4 4 C 1.53192 * 109.58752 * 120.42737 * 2 1 3 5 5 C 1.53042 * 109.30866 * 174.42325 * 4 2 1 6 6 H 1.08993 * 109.46047 * 58.64343 * 5 4 2 7 7 N 1.46498 * 109.45645 * 178.61778 * 5 4 2 8 8 C 1.36936 * 119.99854 * 205.00101 * 7 5 4 9 9 H 1.08002 * 120.00088 * 359.97438 * 8 7 5 10 10 C 1.38815 * 120.00181 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00075 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99950 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47263 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.46866 * 120.00724 * 12 10 8 15 15 H 1.48505 * 109.46963 * 240.00107 * 12 10 8 16 16 C 1.53044 * 109.53769 * 298.63539 * 5 4 2 17 17 C 1.52756 * 109.38175 * 61.24351 * 16 5 4 18 18 N 1.46921 * 109.58512 * 239.72099 * 2 1 3 19 19 C 1.34783 * 120.63357 * 6.57428 * 18 2 1 20 20 O 1.21277 * 119.99545 * 354.95295 * 19 18 2 21 21 C 1.50696 * 120.00135 * 174.66754 * 19 18 2 22 22 N 1.46493 * 109.47190 * 180.27870 * 21 19 18 23 23 C 1.36885 * 126.39893 * 90.00075 * 22 21 19 24 24 C 1.34665 * 106.81984 * 180.02562 * 23 22 21 25 25 N 1.34132 * 108.02383 * 359.97438 * 24 23 22 26 26 C 1.30503 * 109.25218 * 359.72601 * 25 24 23 27 27 H 1.08999 * 109.46739 * 175.95792 * 1 2 3 28 28 H 1.08998 * 109.47299 * 295.95209 * 1 2 3 29 29 H 1.08997 * 109.47488 * 55.95627 * 1 2 3 30 30 H 1.08996 * 109.49542 * 294.37492 * 4 2 1 31 31 H 1.09005 * 109.49739 * 54.47197 * 4 2 1 32 32 H 0.97001 * 120.00424 * 24.99285 * 7 5 4 33 33 H 0.96996 * 120.00063 * 179.97438 * 11 10 8 34 34 H 1.09000 * 109.49553 * 181.31866 * 16 5 4 35 35 H 1.08998 * 109.49370 * 301.38268 * 16 5 4 36 36 H 1.09005 * 109.50734 * 185.70385 * 17 16 5 37 37 H 1.09000 * 109.43660 * 65.42641 * 17 16 5 38 38 H 1.09004 * 109.47518 * 300.28192 * 21 19 18 39 39 H 1.09004 * 109.46768 * 60.27841 * 21 19 18 40 40 H 1.07995 * 126.58924 * 359.96995 * 23 22 21 41 41 H 1.08001 * 125.99368 * 180.02562 * 24 23 22 42 42 H 1.08003 * 125.65242 * 180.28493 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7309 1.2445 5 6 3.5676 -0.8494 1.1690 6 1 4.0061 0.1460 1.0992 7 7 4.0653 -1.5187 2.3733 8 6 5.3498 -1.3022 2.7956 9 1 5.9961 -0.6383 2.2406 10 6 5.8213 -1.9359 3.9371 11 7 5.0339 -2.7454 4.6132 12 14 7.5738 -1.6411 4.5127 13 1 8.2471 -0.6968 3.5854 14 1 7.5548 -1.0624 5.8803 15 1 8.3122 -2.9294 4.5306 16 6 3.9570 -1.6655 -0.0658 17 6 3.4644 -0.9501 -1.3223 18 7 2.0225 -0.6979 -1.1954 19 6 1.1673 -1.1042 -2.1546 20 8 -0.0281 -0.9772 -1.9945 21 6 1.6967 -1.7104 -3.4287 22 7 0.5764 -2.0607 -4.3051 23 6 0.0002 -1.2538 -5.2488 24 6 -0.9889 -1.9670 -5.8201 25 7 -1.0156 -3.1769 -5.2415 26 6 -0.0768 -3.2423 -4.3373 27 1 -0.3633 -1.0251 -0.0724 28 1 -0.3634 0.4497 0.9240 29 1 -0.3634 0.5753 -0.8515 30 1 1.7661 -0.1695 2.1365 31 1 1.6030 -1.7270 1.2891 32 1 3.4850 -2.1152 2.8717 33 1 5.3635 -3.1886 5.4106 34 1 5.0413 -1.7693 -0.1061 35 1 3.4988 -2.6529 -0.0084 36 1 3.6504 -1.5768 -2.1946 37 1 3.9928 -0.0030 -1.4311 38 1 2.3414 -0.9906 -3.9331 39 1 2.2687 -2.6081 -3.1936 40 1 0.2837 -0.2396 -5.4884 41 1 -1.6451 -1.6253 -6.6069 42 1 0.1398 -4.0984 -3.7156 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044876689.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:19 Heat of formation + Delta-G solvation = 40.794511 kcal Electronic energy + Delta-G solvation = -23681.412652 eV Core-core repulsion = 20276.892514 eV Total energy + Delta-G solvation = -3404.520138 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.98720 -41.46964 -38.78409 -36.19988 -35.26494 -33.84275 -33.54443 -31.09306 -30.37573 -28.90650 -28.06416 -26.01943 -24.43026 -23.42283 -22.25165 -22.02301 -21.53208 -20.29723 -19.12126 -18.37128 -18.05521 -16.99454 -16.75280 -16.48857 -15.86150 -15.53091 -15.45294 -15.29985 -14.91350 -14.76538 -14.61917 -14.32132 -14.16424 -14.00941 -13.52002 -13.38346 -13.19315 -13.06776 -12.90387 -12.64985 -12.60722 -12.10753 -12.05140 -11.94766 -11.70214 -11.36046 -10.97093 -10.92539 -10.88787 -10.03205 -9.62870 -9.38940 -9.00355 -7.92964 -5.21601 1.05385 1.48194 1.48901 1.49602 1.58998 1.71453 2.13694 2.27877 2.57100 3.35756 3.41355 3.71437 3.81532 3.86175 3.89793 4.01286 4.02974 4.11144 4.16915 4.26037 4.34075 4.58079 4.61020 4.61756 4.70351 4.78086 4.80048 4.81919 5.01619 5.07727 5.11941 5.22894 5.32084 5.41695 5.51662 5.56188 5.67642 5.85741 6.21301 6.28835 6.41173 7.08456 7.16694 7.34845 8.11136 8.32978 9.30948 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.032016 B = 0.003182 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.346890 B = 8796.846069 C = 9106.109669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.154 3.846 3 H 0.089 0.911 4 C -0.124 4.124 5 C 0.172 3.828 6 H 0.050 0.950 7 N -0.740 5.740 8 C -0.231 4.231 9 H 0.082 0.918 10 C -0.080 4.080 11 N -0.973 5.973 12 Si 0.969 3.031 13 H -0.261 1.261 14 H -0.299 1.299 15 H -0.297 1.297 16 C -0.144 4.144 17 C 0.112 3.888 18 N -0.598 5.598 19 C 0.494 3.506 20 O -0.559 6.559 21 C 0.086 3.914 22 N -0.444 5.444 23 C -0.041 4.041 24 C -0.060 4.060 25 N -0.538 5.538 26 C 0.180 3.820 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.369 0.631 33 H 0.249 0.751 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.118 0.882 37 H 0.093 0.907 38 H 0.159 0.841 39 H 0.150 0.850 40 H 0.200 0.800 41 H 0.180 0.820 42 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.021 6.146 -19.903 21.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.051 3.949 3 H 0.107 0.893 4 C -0.163 4.163 5 C 0.064 3.936 6 H 0.068 0.932 7 N -0.379 5.379 8 C -0.362 4.362 9 H 0.100 0.900 10 C -0.272 4.272 11 N -0.624 5.624 12 Si 0.799 3.201 13 H -0.185 1.185 14 H -0.227 1.227 15 H -0.224 1.224 16 C -0.185 4.185 17 C -0.010 4.010 18 N -0.331 5.331 19 C 0.282 3.718 20 O -0.438 6.438 21 C -0.039 4.039 22 N -0.126 5.126 23 C -0.174 4.174 24 C -0.207 4.207 25 N -0.256 5.256 26 C -0.103 4.103 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.200 0.800 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.136 0.864 37 H 0.111 0.889 38 H 0.176 0.824 39 H 0.168 0.832 40 H 0.217 0.783 41 H 0.198 0.802 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -4.894 5.727 -19.931 21.307 hybrid contribution 1.053 0.134 1.564 1.890 sum -3.842 5.860 -18.368 19.659 Atomic orbital electron populations 1.22019 0.93206 1.02116 1.00501 1.21215 0.94906 0.95575 0.83211 0.89325 1.22153 0.96139 1.00295 0.97731 1.20442 0.91887 0.94925 0.86375 0.93185 1.42697 1.12106 1.54450 1.28625 1.19670 0.90007 1.20719 1.05849 0.90024 1.25549 1.01929 1.00630 0.99061 1.69830 1.37137 1.35326 1.20136 0.85127 0.80275 0.77033 0.77668 1.18501 1.22682 1.22445 1.22391 1.01386 0.99305 0.95376 1.21932 0.78194 1.02144 0.98698 1.48248 1.08377 1.56923 1.19601 1.21210 0.86441 0.78439 0.85741 1.90843 1.17035 1.56074 1.79812 1.22094 0.87672 1.05887 0.88288 1.45178 1.27170 1.12322 1.27977 1.23120 0.99638 0.99340 0.95307 1.22639 1.01844 0.91325 1.04852 1.70233 1.21113 1.22881 1.11412 1.25349 0.92801 0.91333 1.00812 0.93413 0.93263 0.91996 0.91656 0.93414 0.80000 0.94265 0.91138 0.93506 0.86390 0.88918 0.82365 0.83202 0.78315 0.80239 0.76478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.20 7.59 71.98 0.55 -2.65 16 2 C 0.15 3.73 3.49 44.98 0.16 3.89 16 3 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 4 C -0.12 -3.77 4.84 30.67 0.15 -3.62 16 5 C 0.17 5.83 2.73 45.02 0.12 5.95 16 6 H 0.05 1.69 8.08 -2.39 -0.02 1.67 16 7 N -0.74 -34.69 5.12 -322.81 -1.65 -36.34 16 8 C -0.23 -11.92 9.93 84.03 0.83 -11.09 16 9 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 10 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 11 N -0.97 -58.33 13.06 21.65 0.28 -58.05 16 12 Si 0.97 44.28 29.55 68.60 2.03 46.31 16 13 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 14 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 15 H -0.30 -13.70 7.11 99.48 0.71 -13.00 16 16 C -0.14 -3.83 5.64 30.53 0.17 -3.66 16 17 C 0.11 1.76 6.30 86.22 0.54 2.30 16 18 N -0.60 -11.81 2.98 -795.86 -2.37 -14.18 16 19 C 0.49 9.93 7.67 87.65 0.67 10.61 16 20 O -0.56 -16.06 11.83 -3.02 -0.04 -16.10 16 21 C 0.09 0.99 5.04 85.63 0.43 1.42 16 22 N -0.44 -7.97 2.24 -533.15 -1.19 -9.16 16 23 C -0.04 -0.74 11.58 83.08 0.96 0.22 16 24 C -0.06 -1.35 11.87 83.52 0.99 -0.35 16 25 N -0.54 -14.49 11.25 -200.30 -2.25 -16.74 16 26 C 0.18 3.95 12.56 180.26 2.26 6.21 16 27 H 0.05 1.47 6.73 -2.39 -0.02 1.46 16 28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 1.70 6.77 -2.39 -0.02 1.68 16 30 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.37 19.28 7.80 -92.71 -0.72 18.56 16 33 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.12 0.91 5.97 -2.38 -0.01 0.90 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.16 0.68 8.12 -2.39 -0.02 0.66 16 39 H 0.15 0.97 7.47 -2.38 -0.02 0.95 16 40 H 0.20 2.20 8.06 -2.91 -0.02 2.18 16 41 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 42 H 0.22 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -75.05 340.34 3.41 -71.64 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.30 Total: 27.34 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 8.31 Total: 5.29 kcal Atomic # 7 Polarization: -127.29 SS G_CDS: -7.19 Total: -134.48 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.04 Total: -16.10 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -75.05 3.41 -71.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044876689.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.435 kcal (2) G-P(sol) polarization free energy of solvation -75.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds