Wall clock time and date at job start Tue Mar 31 2020 03:13:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08995 * 110.88524 * 2 1
4 4 C 1.55127 * 110.90928 * 124.09942 * 2 1 3
5 5 N 1.47426 * 104.72568 * 155.27218 * 4 2 1
6 6 C 1.34770 * 125.64876 * 155.81591 * 5 4 2
7 7 O 1.21286 * 120.00056 * 359.72173 * 6 5 4
8 8 C 1.50697 * 120.00105 * 179.71820 * 6 5 4
9 9 C 1.50704 * 109.47194 * 180.02562 * 8 6 5
10 10 C 1.39866 * 126.03937 * 269.99704 * 9 8 6
11 11 N 1.30841 * 108.19911 * 179.74249 * 10 9 8
12 12 N 1.40085 * 108.20773 * 0.40256 * 11 10 9
13 13 C 1.46499 * 126.03816 * 179.85105 * 12 11 10
14 14 C 1.34944 * 107.92454 * 359.59610 * 12 11 10
15 15 C 1.47019 * 108.70226 * 335.55518 * 5 4 2
16 16 C 1.54327 * 107.26974 * 1.28257 * 15 5 4
17 17 H 1.09004 * 110.72004 * 140.55903 * 16 15 5
18 18 N 1.46499 * 110.72144 * 263.82842 * 16 15 5
19 19 C 1.36932 * 120.00492 * 273.54797 * 18 16 15
20 20 H 1.08005 * 119.99552 * 359.97438 * 19 18 16
21 21 C 1.38811 * 120.00461 * 180.02562 * 19 18 16
22 22 N 1.31617 * 119.99837 * 359.97438 * 21 19 18
23 23 Si 1.86800 * 120.00209 * 180.02562 * 21 19 18
24 24 H 1.48504 * 109.47240 * 59.99230 * 23 21 19
25 25 H 1.48493 * 109.47313 * 179.97438 * 23 21 19
26 26 H 1.48502 * 109.46772 * 299.99588 * 23 21 19
27 27 H 1.09003 * 109.47533 * 183.87671 * 1 2 3
28 28 H 1.09003 * 109.47070 * 303.87543 * 1 2 3
29 29 H 1.08998 * 109.47372 * 63.87990 * 1 2 3
30 30 H 1.09000 * 110.49681 * 36.42770 * 4 2 1
31 31 H 1.09002 * 110.34192 * 274.04009 * 4 2 1
32 32 H 1.09004 * 109.47259 * 60.00017 * 8 6 5
33 33 H 1.08999 * 109.46905 * 299.99788 * 8 6 5
34 34 H 1.08002 * 125.89933 * 0.02562 * 10 9 8
35 35 H 1.09002 * 109.47391 * 269.69466 * 13 12 11
36 36 H 1.09001 * 109.46813 * 149.69523 * 13 12 11
37 37 H 1.09004 * 109.47041 * 29.69650 * 13 12 11
38 38 H 1.08004 * 126.13144 * 180.26116 * 14 12 11
39 39 H 1.09000 * 109.88676 * 120.70102 * 15 5 4
40 40 H 1.08999 * 109.88447 * 241.87059 * 15 5 4
41 41 H 0.97001 * 119.99863 * 93.55253 * 18 16 15
42 42 H 0.97001 * 120.00240 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9185 1.0183 0.0000
4 6 2.0836 -0.8124 1.2000
5 7 3.4271 -1.2434 0.7727
6 6 4.4476 -1.5623 1.5932
7 8 4.3008 -1.5012 2.7956
8 6 5.7711 -1.9948 1.0167
9 6 6.7340 -2.2923 2.1373
10 6 7.6063 -1.3782 2.7371
11 7 8.2753 -2.0043 3.6711
12 7 7.8557 -3.3408 3.6889
13 6 8.3541 -4.3887 4.5832
14 6 6.9074 -3.4910 2.7408
15 6 3.4674 -1.2739 -0.6966
16 6 2.0860 -0.8075 -1.2026
17 1 2.1920 -0.1691 -2.0797
18 7 1.2267 -1.9568 -1.4970
19 6 1.2814 -2.5552 -2.7275
20 1 1.9577 -2.1795 -3.4811
21 6 0.4668 -3.6440 -3.0067
22 7 -0.3578 -4.1014 -2.0885
23 14 0.5419 -4.4607 -4.6850
24 1 1.9160 -4.9692 -4.9270
25 1 -0.4190 -5.5920 -4.7284
26 1 0.1888 -3.4702 -5.7336
27 1 -0.3634 -1.0253 0.0695
28 1 -0.3633 0.5728 0.8532
29 1 -0.3634 0.4524 -0.9227
30 1 1.4524 -1.6787 1.3981
31 1 2.1515 -0.1811 2.0859
32 1 6.1741 -1.1966 0.3932
33 1 5.6289 -2.8910 0.4129
34 1 7.7068 -0.3347 2.4775
35 1 9.2028 -4.8901 4.1179
36 1 7.5618 -5.1136 4.7704
37 1 8.6684 -3.9422 5.5266
38 1 6.3807 -4.4042 2.5059
39 1 4.2425 -0.5993 -1.0603
40 1 3.6649 -2.2889 -1.0411
41 1 0.6190 -2.2940 -0.8204
42 1 -0.9268 -4.8625 -2.2834
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001054467593.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:13:38
Heat of formation + Delta-G solvation = 60.925783 kcal
Electronic energy + Delta-G solvation = -23308.103659 eV
Core-core repulsion = 19904.456479 eV
Total energy + Delta-G solvation = -3403.647180 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-41.21799 -39.59151 -37.49512 -33.89361 -33.65305 -32.45363 -31.56663 -30.46417
-28.50980 -27.66587 -26.51839 -25.04179 -23.83016 -22.08558 -21.10843 -20.48069
-19.25295 -18.72298 -17.53713 -16.80978 -16.53044 -15.76292 -15.43570 -14.97620
-14.57400 -14.42750 -14.26607 -13.78943 -13.47053 -13.11273 -12.99377 -12.96402
-12.75988 -12.52901 -12.39046 -12.02444 -11.91254 -11.65992 -11.50906 -11.11399
-10.92657 -10.75933 -10.60428 -10.43803 -10.29770 -9.92277 -9.67789 -9.52045
-9.40528 -9.01281 -8.35218 -8.15637 -7.07471 -5.85027 -3.14983 1.88826
2.49113 2.75661 3.03954 3.38654 3.43718 3.44785 3.55842 4.43370
4.51628 4.82694 4.85321 4.95732 5.04973 5.13865 5.20073 5.21070
5.32086 5.36551 5.43462 5.53271 5.65467 5.71229 5.80005 5.81570
5.96975 5.99406 6.12796 6.22114 6.28073 6.37266 6.38744 6.55071
6.63025 6.71233 6.78593 6.94102 6.97746 7.62079 7.68173 7.99865
8.33007 8.58936 9.44793 10.00239 10.34954 11.37041
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.017738 B = 0.003663 C = 0.003258
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1578.121989 B = 7641.571749 C = 8592.588613
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.114 4.114
3 H 0.078 0.922
4 C 0.116 3.884
5 N -0.610 5.610
6 C 0.525 3.475
7 O -0.550 6.550
8 C -0.056 4.056
9 C -0.214 4.214
10 C 0.063 3.937
11 N -0.303 5.303
12 N -0.380 5.380
13 C 0.104 3.896
14 C 0.068 3.932
15 C 0.071 3.929
16 C 0.172 3.828
17 H 0.069 0.931
18 N -0.712 5.712
19 C -0.247 4.247
20 H 0.072 0.928
21 C -0.008 4.008
22 N -0.930 5.930
23 Si 0.907 3.093
24 H -0.286 1.286
25 H -0.292 1.292
26 H -0.285 1.285
27 H 0.069 0.931
28 H 0.044 0.956
29 H 0.059 0.941
30 H 0.067 0.933
31 H 0.067 0.933
32 H 0.098 0.902
33 H 0.098 0.902
34 H 0.180 0.820
35 H 0.072 0.928
36 H 0.086 0.914
37 H 0.087 0.913
38 H 0.172 0.828
39 H 0.055 0.945
40 H 0.077 0.923
41 H 0.387 0.613
42 H 0.257 0.743
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.935 3.803 7.600 15.477
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.134 4.134
3 H 0.097 0.903
4 C -0.007 4.007
5 N -0.343 5.343
6 C 0.313 3.687
7 O -0.428 6.428
8 C -0.097 4.097
9 C -0.226 4.226
10 C -0.123 4.123
11 N -0.125 5.125
12 N -0.162 5.162
13 C -0.037 4.037
14 C -0.078 4.078
15 C -0.055 4.055
16 C 0.060 3.940
17 H 0.087 0.913
18 N -0.354 5.354
19 C -0.377 4.377
20 H 0.090 0.910
21 C -0.205 4.205
22 N -0.577 5.577
23 Si 0.738 3.262
24 H -0.212 1.212
25 H -0.217 1.217
26 H -0.212 1.212
27 H 0.088 0.912
28 H 0.063 0.937
29 H 0.079 0.921
30 H 0.085 0.915
31 H 0.085 0.915
32 H 0.116 0.884
33 H 0.116 0.884
34 H 0.197 0.803
35 H 0.091 0.909
36 H 0.104 0.896
37 H 0.105 0.895
38 H 0.189 0.811
39 H 0.073 0.927
40 H 0.095 0.905
41 H 0.223 0.777
42 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges 13.874 3.697 9.127 17.013
hybrid contribution -0.827 -0.863 -1.405 1.845
sum 13.046 2.834 7.723 15.423
Atomic orbital electron populations
1.21546 0.93516 1.02921 1.00916 1.22646 0.96862 0.98430 0.95463
0.90349 1.22261 0.83129 0.98178 0.97121 1.48485 1.11859 1.66204
1.07755 1.20325 0.84891 0.77216 0.86242 1.90666 1.83347 1.53973
1.14797 1.19857 0.90650 1.03366 0.95816 1.19472 1.04685 0.93293
1.05121 1.23687 0.94825 0.99909 0.93901 1.77285 1.24322 0.88539
1.22314 1.48344 1.31073 1.08135 1.28620 1.21810 1.00343 0.88020
0.93576 1.22272 0.93429 1.00275 0.91816 1.23260 1.01370 1.02134
0.78738 1.21202 0.88419 0.89804 0.94622 0.91306 1.42452 1.45461
1.32816 1.14660 1.19184 1.18541 1.09454 0.90569 0.91038 1.24743
0.98951 0.98920 0.97885 1.69645 1.27281 1.27546 1.33255 0.86280
0.77198 0.78911 0.83822 1.21237 1.21750 1.21207 0.91247 0.93717
0.92147 0.91459 0.91500 0.88407 0.88390 0.80306 0.90929 0.89567
0.89470 0.81087 0.92689 0.90490 0.77738 0.93345
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.05 8.85 37.15 0.33 -1.72 16
2 C -0.11 -1.76 3.53 -88.36 -0.31 -2.07 16
3 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16
4 C 0.12 1.92 6.35 -2.41 -0.02 1.91 16
5 N -0.61 -10.09 3.32 -170.38 -0.57 -10.65 16
6 C 0.52 8.76 7.84 -10.99 -0.09 8.67 16
7 O -0.55 -11.06 16.29 5.55 0.09 -10.97 16
8 C -0.06 -0.72 5.38 -29.03 -0.16 -0.88 16
9 C -0.21 -2.91 4.59 -105.05 -0.48 -3.39 16
10 C 0.06 0.85 11.96 -17.36 -0.21 0.65 16
11 N -0.30 -4.37 12.58 30.62 0.39 -3.99 16
12 N -0.38 -4.72 4.01 -68.16 -0.27 -5.00 16
13 C 0.10 0.80 11.47 59.85 0.69 1.48 16
14 C 0.07 0.86 11.40 -17.22 -0.20 0.67 16
15 C 0.07 1.14 6.23 -3.06 -0.02 1.12 16
16 C 0.17 3.05 3.36 -66.09 -0.22 2.83 16
17 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16
18 N -0.71 -16.18 4.61 -51.65 -0.24 -16.42 16
19 C -0.25 -6.29 9.98 -15.06 -0.15 -6.44 16
20 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16
21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16
22 N -0.93 -26.73 13.06 55.49 0.72 -26.00 16
23 Si 0.91 21.28 29.55 -169.99 -5.02 16.26 16
24 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16
25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
26 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16
27 H 0.07 1.26 6.38 -51.93 -0.33 0.93 16
28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16
29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16
30 H 0.07 1.23 7.99 -51.93 -0.41 0.82 16
31 H 0.07 1.09 8.03 -51.93 -0.42 0.67 16
32 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16
33 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16
34 H 0.18 1.94 8.06 -52.49 -0.42 1.52 16
35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
36 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16
37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16
38 H 0.17 1.73 8.06 -52.48 -0.42 1.31 16
39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16
40 H 0.08 1.38 8.04 -51.93 -0.42 0.96 16
41 H 0.39 9.51 6.10 -40.82 -0.25 9.26 16
42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16
LS Contribution 351.39 15.07 5.30 5.30
Total: -1.00 -33.17 351.39 -6.98 -40.15
By element:
Atomic # 1 Polarization: 15.26 SS G_CDS: -6.45 Total: 8.82 kcal
Atomic # 6 Polarization: 3.43 SS G_CDS: -0.93 Total: 2.50 kcal
Atomic # 7 Polarization: -62.09 SS G_CDS: 0.03 Total: -62.05 kcal
Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal
Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal
Total LS contribution 5.30 Total: 5.30 kcal
Total: -33.17 -6.98 -40.15 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001054467593.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.081 kcal
(2) G-P(sol) polarization free energy of solvation -33.172 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.908 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.155 kcal
(6) G-S(sol) free energy of system = (1) + (5) 60.926 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds