Wall clock time and date at job start Tue Mar 31 2020 03:13:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08995 * 110.88524 * 2 1
4 4 C 1.55127 * 110.90928 * 124.09942 * 2 1 3
5 5 N 1.47426 * 104.72568 * 155.27218 * 4 2 1
6 6 C 1.34770 * 125.64876 * 155.81591 * 5 4 2
7 7 O 1.21286 * 120.00056 * 359.72173 * 6 5 4
8 8 C 1.50697 * 120.00105 * 179.71820 * 6 5 4
9 9 C 1.50704 * 109.47194 * 180.02562 * 8 6 5
10 10 C 1.39866 * 126.03937 * 269.99704 * 9 8 6
11 11 N 1.30841 * 108.19911 * 179.74249 * 10 9 8
12 12 N 1.40085 * 108.20773 * 0.40256 * 11 10 9
13 13 C 1.46499 * 126.03816 * 179.85105 * 12 11 10
14 14 C 1.34944 * 107.92454 * 359.59610 * 12 11 10
15 15 C 1.47019 * 108.70226 * 335.55518 * 5 4 2
16 16 C 1.54327 * 107.26974 * 1.28257 * 15 5 4
17 17 H 1.09004 * 110.72004 * 140.55903 * 16 15 5
18 18 N 1.46499 * 110.72144 * 263.82842 * 16 15 5
19 19 C 1.36932 * 120.00492 * 273.54797 * 18 16 15
20 20 H 1.08005 * 119.99552 * 359.97438 * 19 18 16
21 21 C 1.38811 * 120.00461 * 180.02562 * 19 18 16
22 22 N 1.31617 * 119.99837 * 359.97438 * 21 19 18
23 23 Si 1.86800 * 120.00209 * 180.02562 * 21 19 18
24 24 H 1.48504 * 109.47240 * 59.99230 * 23 21 19
25 25 H 1.48493 * 109.47313 * 179.97438 * 23 21 19
26 26 H 1.48502 * 109.46772 * 299.99588 * 23 21 19
27 27 H 1.09003 * 109.47533 * 183.87671 * 1 2 3
28 28 H 1.09003 * 109.47070 * 303.87543 * 1 2 3
29 29 H 1.08998 * 109.47372 * 63.87990 * 1 2 3
30 30 H 1.09000 * 110.49681 * 36.42770 * 4 2 1
31 31 H 1.09002 * 110.34192 * 274.04009 * 4 2 1
32 32 H 1.09004 * 109.47259 * 60.00017 * 8 6 5
33 33 H 1.08999 * 109.46905 * 299.99788 * 8 6 5
34 34 H 1.08002 * 125.89933 * 0.02562 * 10 9 8
35 35 H 1.09002 * 109.47391 * 269.69466 * 13 12 11
36 36 H 1.09001 * 109.46813 * 149.69523 * 13 12 11
37 37 H 1.09004 * 109.47041 * 29.69650 * 13 12 11
38 38 H 1.08004 * 126.13144 * 180.26116 * 14 12 11
39 39 H 1.09000 * 109.88676 * 120.70102 * 15 5 4
40 40 H 1.08999 * 109.88447 * 241.87059 * 15 5 4
41 41 H 0.97001 * 119.99863 * 93.55253 * 18 16 15
42 42 H 0.97001 * 120.00240 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9185 1.0183 0.0000
4 6 2.0836 -0.8124 1.2000
5 7 3.4271 -1.2434 0.7727
6 6 4.4476 -1.5623 1.5932
7 8 4.3008 -1.5012 2.7956
8 6 5.7711 -1.9948 1.0167
9 6 6.7340 -2.2923 2.1373
10 6 7.6063 -1.3782 2.7371
11 7 8.2753 -2.0043 3.6711
12 7 7.8557 -3.3408 3.6889
13 6 8.3541 -4.3887 4.5832
14 6 6.9074 -3.4910 2.7408
15 6 3.4674 -1.2739 -0.6966
16 6 2.0860 -0.8075 -1.2026
17 1 2.1920 -0.1691 -2.0797
18 7 1.2267 -1.9568 -1.4970
19 6 1.2814 -2.5552 -2.7275
20 1 1.9577 -2.1795 -3.4811
21 6 0.4668 -3.6440 -3.0067
22 7 -0.3578 -4.1014 -2.0885
23 14 0.5419 -4.4607 -4.6850
24 1 1.9160 -4.9692 -4.9270
25 1 -0.4190 -5.5920 -4.7284
26 1 0.1888 -3.4702 -5.7336
27 1 -0.3634 -1.0253 0.0695
28 1 -0.3633 0.5728 0.8532
29 1 -0.3634 0.4524 -0.9227
30 1 1.4524 -1.6787 1.3981
31 1 2.1515 -0.1811 2.0859
32 1 6.1741 -1.1966 0.3932
33 1 5.6289 -2.8910 0.4129
34 1 7.7068 -0.3347 2.4775
35 1 9.2028 -4.8901 4.1179
36 1 7.5618 -5.1136 4.7704
37 1 8.6684 -3.9422 5.5266
38 1 6.3807 -4.4042 2.5059
39 1 4.2425 -0.5993 -1.0603
40 1 3.6649 -2.2889 -1.0411
41 1 0.6190 -2.2940 -0.8204
42 1 -0.9268 -4.8625 -2.2834
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001054467593.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:13:38
Heat of formation + Delta-G solvation = 39.247169 kcal
Electronic energy + Delta-G solvation = -23309.043714 eV
Core-core repulsion = 19904.456479 eV
Total energy + Delta-G solvation = -3404.587236 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-42.17146 -40.91259 -38.89012 -35.61727 -34.56481 -33.87167 -32.66788 -32.11176
-29.48345 -29.18214 -27.57321 -26.13243 -25.67164 -23.46447 -22.02205 -21.50621
-20.64743 -19.97130 -19.32463 -17.91609 -17.69341 -17.16936 -16.48050 -16.32455
-16.02583 -15.74146 -15.37871 -15.29336 -14.66258 -14.51440 -14.23238 -14.09588
-13.81386 -13.52668 -13.41044 -13.22159 -13.15876 -13.00484 -12.80681 -12.73819
-12.66277 -12.27014 -12.14157 -11.93722 -11.56572 -11.40697 -11.32359 -10.97900
-10.78951 -10.34392 -9.52659 -9.31907 -8.95134 -7.87453 -5.15293 0.94507
1.53761 1.55009 1.60790 1.66280 1.74610 1.77280 2.33089 2.62036
3.44855 3.57141 3.64241 3.94447 3.97982 3.99625 4.04792 4.15149
4.28680 4.31233 4.42914 4.47768 4.49720 4.66327 4.67007 4.70428
4.77992 4.79976 4.88682 4.93283 5.05560 5.05615 5.18169 5.26721
5.36735 5.42165 5.57808 5.64217 5.70158 6.13117 6.33944 6.70497
6.72845 7.29214 7.41553 8.17020 8.39341 9.35787
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.017738 B = 0.003663 C = 0.003258
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1578.121989 B = 7641.571749 C = 8592.588613
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.099 4.099
3 H 0.110 0.890
4 C 0.115 3.885
5 N -0.611 5.611
6 C 0.521 3.479
7 O -0.589 6.589
8 C -0.045 4.045
9 C -0.235 4.235
10 C 0.053 3.947
11 N -0.334 5.334
12 N -0.383 5.383
13 C 0.094 3.906
14 C 0.062 3.938
15 C 0.081 3.919
16 C 0.161 3.839
17 H 0.082 0.918
18 N -0.724 5.724
19 C -0.233 4.233
20 H 0.084 0.916
21 C -0.074 4.074
22 N -0.971 5.971
23 Si 0.967 3.033
24 H -0.278 1.278
25 H -0.305 1.305
26 H -0.278 1.278
27 H 0.036 0.964
28 H 0.068 0.932
29 H 0.057 0.943
30 H 0.040 0.960
31 H 0.071 0.929
32 H 0.124 0.876
33 H 0.108 0.892
34 H 0.198 0.802
35 H 0.091 0.909
36 H 0.106 0.894
37 H 0.090 0.910
38 H 0.192 0.808
39 H 0.094 0.906
40 H 0.058 0.942
41 H 0.374 0.626
42 H 0.247 0.753
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.597 4.775 6.793 16.793
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.119 4.119
3 H 0.128 0.872
4 C -0.008 4.008
5 N -0.344 5.344
6 C 0.312 3.688
7 O -0.470 6.470
8 C -0.086 4.086
9 C -0.247 4.247
10 C -0.133 4.133
11 N -0.156 5.156
12 N -0.165 5.165
13 C -0.046 4.046
14 C -0.085 4.085
15 C -0.044 4.044
16 C 0.051 3.949
17 H 0.100 0.900
18 N -0.365 5.365
19 C -0.365 4.365
20 H 0.102 0.898
21 C -0.266 4.266
22 N -0.622 5.622
23 Si 0.797 3.203
24 H -0.204 1.204
25 H -0.232 1.232
26 H -0.205 1.205
27 H 0.055 0.945
28 H 0.087 0.913
29 H 0.076 0.924
30 H 0.059 0.941
31 H 0.089 0.911
32 H 0.142 0.858
33 H 0.126 0.874
34 H 0.214 0.786
35 H 0.109 0.891
36 H 0.124 0.876
37 H 0.108 0.892
38 H 0.209 0.791
39 H 0.112 0.888
40 H 0.077 0.923
41 H 0.208 0.792
42 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges 15.594 4.710 8.306 18.286
hybrid contribution -1.304 -1.119 -1.070 2.024
sum 14.290 3.590 7.236 16.416
Atomic orbital electron populations
1.21475 0.93838 1.01207 1.01854 1.22611 0.96499 0.99324 0.93440
0.87216 1.22202 0.83192 0.97421 0.97966 1.48590 1.11726 1.66013
1.08044 1.21026 0.85874 0.76175 0.85746 1.90646 1.84141 1.55619
1.16563 1.19853 0.88320 1.04555 0.95832 1.19672 1.05262 0.93786
1.05957 1.24066 0.94655 1.00879 0.93651 1.77217 1.25446 0.89812
1.23170 1.48732 1.30727 1.08198 1.28803 1.22163 1.01763 0.87473
0.93213 1.22715 0.93291 1.00982 0.91550 1.23081 1.01065 1.01958
0.78278 1.21494 0.88651 0.88663 0.96138 0.90024 1.42630 1.46199
1.34059 1.13571 1.19626 1.16930 1.08396 0.91527 0.89783 1.25469
0.99745 1.00448 1.00965 1.69813 1.28940 1.28270 1.35131 0.85304
0.76978 0.77594 0.80413 1.20379 1.23165 1.20468 0.94486 0.91313
0.92378 0.94139 0.91092 0.85757 0.87366 0.78561 0.89079 0.87553
0.89177 0.79090 0.88781 0.92315 0.79229 0.94374
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.81 8.85 71.98 0.64 -3.18 16
2 C -0.10 -2.85 3.53 -9.33 -0.03 -2.89 16
3 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16
4 C 0.12 3.73 6.35 86.93 0.55 4.28 16
5 N -0.61 -19.18 3.32 -811.36 -2.70 -21.88 16
6 C 0.52 16.64 7.84 87.66 0.69 17.33 16
7 O -0.59 -23.39 16.29 -3.05 -0.05 -23.44 16
8 C -0.05 -1.06 5.38 29.10 0.16 -0.91 16
9 C -0.23 -6.03 4.59 -20.14 -0.09 -6.12 16
10 C 0.05 1.37 11.96 85.23 1.02 2.39 16
11 N -0.33 -9.37 12.58 -57.02 -0.72 -10.08 16
12 N -0.38 -9.04 4.01 -369.55 -1.48 -10.52 16
13 C 0.09 1.28 11.47 127.77 1.47 2.75 16
14 C 0.06 1.47 11.40 83.54 0.95 2.43 16
15 C 0.08 2.40 6.23 86.73 0.54 2.94 16
16 C 0.16 5.37 3.36 46.18 0.16 5.52 16
17 H 0.08 2.57 8.12 -2.39 -0.02 2.55 16
18 N -0.72 -32.61 4.61 -317.32 -1.46 -34.08 16
19 C -0.23 -11.70 9.98 84.03 0.84 -10.86 16
20 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16
21 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16
22 N -0.97 -57.18 13.06 21.65 0.28 -56.90 16
23 Si 0.97 43.83 29.55 68.60 2.03 45.85 16
24 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16
25 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16
26 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16
27 H 0.04 1.36 6.38 -2.39 -0.02 1.35 16
28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16
29 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16
30 H 0.04 1.52 7.99 -2.39 -0.02 1.50 16
31 H 0.07 2.24 8.03 -2.39 -0.02 2.22 16
32 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16
33 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16
34 H 0.20 3.99 8.06 -2.91 -0.02 3.97 16
35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16
36 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16
37 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16
38 H 0.19 3.55 8.06 -2.91 -0.02 3.52 16
39 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16
40 H 0.06 1.98 8.04 -2.39 -0.02 1.96 16
41 H 0.37 18.78 6.10 -92.71 -0.57 18.22 16
42 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16
Total: -1.00 -72.53 351.39 3.69 -68.84
By element:
Atomic # 1 Polarization: 31.62 SS G_CDS: 0.45 Total: 32.07 kcal
Atomic # 6 Polarization: 2.79 SS G_CDS: 7.35 Total: 10.14 kcal
Atomic # 7 Polarization: -127.38 SS G_CDS: -6.08 Total: -133.46 kcal
Atomic # 8 Polarization: -23.39 SS G_CDS: -0.05 Total: -23.44 kcal
Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal
Total: -72.53 3.69 -68.84 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001054467593.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.084 kcal
(2) G-P(sol) polarization free energy of solvation -72.532 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.552 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.837 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.247 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds