Wall clock time and date at job start Tue Mar 31 2020 03:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47236 * 2 1 4 4 C 1.35400 * 126.44387 * 265.00457 * 3 2 1 5 5 C 1.35556 * 107.16419 * 180.02562 * 4 3 2 6 6 N 1.33099 * 108.35113 * 359.73500 * 5 4 3 7 7 C 1.31618 * 109.09320 * 0.43495 * 6 5 4 8 8 C 1.47404 * 125.86498 * 179.82811 * 7 6 5 9 9 O 1.21605 * 120.00319 * 179.97438 * 8 7 6 10 10 N 1.34784 * 119.99819 * 359.69440 * 8 7 6 11 11 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 12 12 H 1.09003 * 110.64114 * 36.68525 * 11 10 8 13 13 C 1.54326 * 110.72219 * 273.54924 * 11 10 8 14 14 N 1.47018 * 107.26875 * 219.44590 * 13 11 10 15 15 C 1.36938 * 125.64584 * 178.97875 * 14 13 11 16 16 H 1.07998 * 119.99852 * 179.97438 * 15 14 13 17 17 C 1.38808 * 120.00193 * 359.96409 * 15 14 13 18 18 N 1.31627 * 119.99857 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00239 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47118 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47264 * 120.00179 * 19 17 15 22 22 H 1.48502 * 109.47198 * 240.00219 * 19 17 15 23 23 C 1.47421 * 108.70815 * 358.93340 * 14 13 11 24 24 C 1.54915 * 104.82861 * 24.13309 * 23 14 13 25 25 H 1.09000 * 111.00535 * 81.06532 * 24 23 14 26 26 C 1.53000 * 111.00124 * 204.91653 * 24 23 14 27 27 H 1.09002 * 109.47363 * 59.99579 * 1 2 3 28 28 H 1.08995 * 109.47350 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47154 * 299.99852 * 1 2 3 30 30 H 1.08999 * 109.46702 * 240.00327 * 2 1 3 31 31 H 1.08996 * 109.46936 * 120.00289 * 2 1 3 32 32 H 1.08004 * 126.41701 * 359.96300 * 4 3 2 33 33 H 1.08007 * 125.82321 * 179.97438 * 5 4 3 34 34 H 0.96999 * 120.00044 * 359.97438 * 10 8 7 35 35 H 1.09005 * 109.87612 * 338.85652 * 13 11 10 36 36 H 1.08998 * 109.88722 * 99.86987 * 13 11 10 37 37 H 0.96999 * 119.99523 * 179.97438 * 18 17 15 38 38 H 1.08998 * 110.36698 * 142.96768 * 23 14 13 39 39 H 1.09000 * 110.36736 * 265.18523 * 23 14 13 40 40 H 1.09001 * 109.46836 * 172.19539 * 26 24 23 41 41 H 1.08992 * 109.47189 * 292.19130 * 26 24 23 42 42 H 1.08994 * 109.47309 * 52.19936 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3759 2.1078 -1.0851 5 6 2.7662 3.3270 -0.6391 6 7 2.6446 3.3471 0.6861 7 6 2.1991 2.1782 1.0954 8 6 1.9347 1.7964 2.4943 9 8 1.5219 0.6822 2.7529 10 7 2.1557 2.6804 3.4875 11 6 1.8924 2.3012 4.8778 12 1 2.1557 1.2572 5.0478 13 6 0.4152 2.5581 5.2434 14 7 0.3908 3.0881 6.6146 15 6 -0.7305 3.4635 7.3052 16 1 -0.6425 3.8422 8.3128 17 6 -1.9801 3.3576 6.7102 18 7 -2.0873 2.8958 5.4823 19 14 -3.5095 3.8703 7.6520 20 1 -3.1213 4.3521 9.0020 21 1 -4.2008 4.9605 6.9178 22 1 -4.4225 2.7066 7.7849 23 6 1.7732 3.1474 7.1232 24 6 2.6591 3.2309 5.8551 25 1 2.6995 4.2510 5.4732 26 6 4.0652 2.6952 6.1322 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.3551 1.7776 -2.1132 33 1 3.1128 4.1441 -1.2547 34 1 2.4892 3.5677 3.2816 35 1 -0.0152 3.2869 4.5566 36 1 -0.1466 1.6254 5.1940 37 1 -2.9605 2.8214 5.0667 38 1 1.9121 4.0340 7.7419 39 1 2.0069 2.2478 7.6927 40 1 4.6221 2.6357 5.1971 41 1 4.5804 3.3658 6.8198 42 1 3.9948 1.7026 6.5769 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079635585.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:56 Heat of formation + Delta-G solvation = 51.229559 kcal Electronic energy + Delta-G solvation = -23980.862249 eV Core-core repulsion = 20576.794609 eV Total energy + Delta-G solvation = -3404.067640 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.24588 -39.25798 -37.40470 -35.16913 -33.79409 -32.58189 -30.44002 -30.33282 -29.71012 -27.63114 -25.60978 -24.37684 -23.68543 -22.55066 -21.39066 -20.36504 -19.87492 -19.29998 -17.62527 -16.85577 -16.16994 -15.88948 -15.59454 -14.93778 -14.67866 -14.19343 -13.96970 -13.86611 -13.66561 -13.49948 -13.11811 -12.74811 -12.68275 -12.65871 -12.11616 -11.95319 -11.66427 -11.40522 -11.30366 -11.00401 -10.76693 -10.58970 -10.35419 -10.19804 -9.95019 -9.89767 -9.85357 -9.76844 -9.64967 -8.68824 -8.57643 -8.36877 -6.79929 -5.66010 -3.01057 1.48645 2.48811 2.69457 3.42833 3.47678 3.50758 3.52917 3.65942 4.46882 4.53874 4.57370 4.78653 4.93561 5.10131 5.17724 5.25861 5.35429 5.39594 5.48496 5.58727 5.59438 5.67393 5.78940 6.00526 6.02776 6.10938 6.19187 6.19670 6.24050 6.38218 6.52599 6.58731 6.66412 6.76823 6.91758 6.96794 7.54222 7.61562 7.76472 7.88366 8.01291 8.28883 8.49135 9.24922 9.85837 10.50665 11.44754 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015901 B = 0.004661 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.500376 B = 6005.725099 C = 7008.602958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.097 3.903 3 N -0.414 5.414 4 C -0.038 4.038 5 C -0.031 4.031 6 N -0.449 5.449 7 C 0.151 3.849 8 C 0.604 3.396 9 O -0.538 6.538 10 N -0.685 5.685 11 C 0.121 3.879 12 H 0.089 0.911 13 C 0.174 3.826 14 N -0.606 5.606 15 C -0.229 4.229 16 H 0.080 0.920 17 C -0.008 4.008 18 N -0.919 5.919 19 Si 0.911 3.089 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.141 3.859 24 C -0.113 4.113 25 H 0.080 0.920 26 C -0.138 4.138 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.179 0.821 33 H 0.175 0.825 34 H 0.407 0.593 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.251 0.749 38 H 0.043 0.957 39 H 0.023 0.977 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.718 -3.311 -12.614 17.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.025 4.025 3 N -0.094 5.094 4 C -0.176 4.176 5 C -0.184 4.184 6 N -0.170 5.170 7 C -0.109 4.109 8 C 0.387 3.613 9 O -0.414 6.414 10 N -0.335 5.335 11 C 0.017 3.983 12 H 0.107 0.893 13 C 0.048 3.952 14 N -0.333 5.333 15 C -0.357 4.357 16 H 0.098 0.902 17 C -0.204 4.204 18 N -0.566 5.566 19 Si 0.742 3.258 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.015 3.985 24 C -0.133 4.133 25 H 0.098 0.902 26 C -0.195 4.195 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.129 0.871 32 H 0.197 0.803 33 H 0.192 0.808 34 H 0.243 0.757 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.040 0.960 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.279 -3.646 -11.844 16.757 hybrid contribution -0.982 0.087 -0.510 1.110 sum 10.297 -3.559 -12.354 16.472 Atomic orbital electron populations 1.22079 0.93335 1.03444 1.03391 1.22120 0.96569 0.78716 1.05070 1.45294 1.45011 1.12978 1.06126 1.22850 1.07441 0.94275 0.93015 1.22383 1.07476 0.97363 0.91165 1.70211 1.15749 1.18535 1.12548 1.22846 1.09320 0.88182 0.90526 1.16418 0.78174 0.84905 0.81812 1.90798 1.46497 1.20793 1.83340 1.45610 1.65136 1.16554 1.06163 1.22584 0.99177 0.98750 0.77805 0.89316 1.21474 0.88162 0.99145 0.86417 1.44411 1.00595 1.75689 1.12579 1.19101 0.83695 1.36104 0.96828 0.90231 1.24825 0.97560 1.01441 0.96623 1.69991 1.22492 1.51307 1.12805 0.86051 0.83267 0.77713 0.78770 1.20479 1.21815 1.21786 1.21591 0.85297 0.98422 0.93209 1.22623 0.94328 0.99029 0.97348 0.90174 1.21702 0.95834 1.00985 1.01019 0.92462 0.90388 0.90701 0.89297 0.87133 0.80341 0.80777 0.75709 0.93074 0.93313 0.93845 0.93902 0.95978 0.93021 0.92687 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 10.24 37.16 0.38 -1.51 16 2 C 0.10 1.07 6.18 -4.04 -0.02 1.04 16 3 N -0.41 -5.45 2.76 -114.59 -0.32 -5.76 16 4 C -0.04 -0.40 11.53 -16.94 -0.20 -0.60 16 5 C -0.03 -0.37 11.85 -17.96 -0.21 -0.58 16 6 N -0.45 -6.99 10.89 -11.26 -0.12 -7.11 16 7 C 0.15 2.45 7.78 -154.52 -1.20 1.25 16 8 C 0.60 11.08 7.81 -12.53 -0.10 10.98 16 9 O -0.54 -10.89 14.25 5.27 0.08 -10.81 16 10 N -0.69 -12.23 5.13 -53.11 -0.27 -12.50 16 11 C 0.12 2.38 2.71 -66.10 -0.18 2.20 16 12 H 0.09 1.79 7.59 -51.93 -0.39 1.40 16 13 C 0.17 4.39 5.12 -3.06 -0.02 4.37 16 14 N -0.61 -15.75 3.39 -170.07 -0.58 -16.32 16 15 C -0.23 -6.49 10.28 -15.06 -0.15 -6.64 16 16 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 17 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 18 N -0.92 -27.84 10.31 55.49 0.57 -27.27 16 19 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 C 0.14 2.91 6.70 -2.53 -0.02 2.89 16 24 C -0.11 -1.95 3.25 -88.47 -0.29 -2.24 16 25 H 0.08 1.35 8.00 -51.93 -0.42 0.94 16 26 C -0.14 -1.88 9.31 37.16 0.35 -1.54 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.15 7.87 -51.93 -0.41 0.74 16 30 H 0.09 0.66 8.13 -51.93 -0.42 0.24 16 31 H 0.11 1.40 6.63 -51.93 -0.34 1.05 16 32 H 0.18 1.16 8.06 -52.48 -0.42 0.74 16 33 H 0.18 1.54 8.06 -52.48 -0.42 1.12 16 34 H 0.41 6.69 8.20 -40.82 -0.33 6.35 16 35 H 0.05 1.44 7.27 -51.93 -0.38 1.07 16 36 H 0.05 1.41 7.50 -51.93 -0.39 1.02 16 37 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.02 0.45 7.99 -51.93 -0.41 0.04 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.76 8.07 -51.93 -0.42 0.34 16 LS Contribution 346.07 15.07 5.22 5.22 Total: -1.00 -33.79 346.07 -8.63 -42.42 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -6.43 Total: 5.34 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: -1.76 Total: 9.30 kcal Atomic # 7 Polarization: -68.25 SS G_CDS: -0.72 Total: -68.97 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.08 Total: -10.81 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.79 -8.63 -42.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079635585.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.651 kcal (2) G-P(sol) polarization free energy of solvation -33.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds