Wall clock time and date at job start Tue Mar 31 2020 03:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47236 * 2 1 4 4 C 1.35400 * 126.44387 * 265.00457 * 3 2 1 5 5 C 1.35556 * 107.16419 * 180.02562 * 4 3 2 6 6 N 1.33099 * 108.35113 * 359.73500 * 5 4 3 7 7 C 1.31618 * 109.09320 * 0.43495 * 6 5 4 8 8 C 1.47404 * 125.86498 * 179.82811 * 7 6 5 9 9 O 1.21605 * 120.00319 * 179.97438 * 8 7 6 10 10 N 1.34784 * 119.99819 * 359.69440 * 8 7 6 11 11 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 12 12 H 1.09003 * 110.64114 * 36.68525 * 11 10 8 13 13 C 1.54326 * 110.72219 * 273.54924 * 11 10 8 14 14 N 1.47018 * 107.26875 * 219.44590 * 13 11 10 15 15 C 1.36938 * 125.64584 * 178.97875 * 14 13 11 16 16 H 1.07998 * 119.99852 * 179.97438 * 15 14 13 17 17 C 1.38808 * 120.00193 * 359.96409 * 15 14 13 18 18 N 1.31627 * 119.99857 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00239 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47118 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47264 * 120.00179 * 19 17 15 22 22 H 1.48502 * 109.47198 * 240.00219 * 19 17 15 23 23 C 1.47421 * 108.70815 * 358.93340 * 14 13 11 24 24 C 1.54915 * 104.82861 * 24.13309 * 23 14 13 25 25 H 1.09000 * 111.00535 * 81.06532 * 24 23 14 26 26 C 1.53000 * 111.00124 * 204.91653 * 24 23 14 27 27 H 1.09002 * 109.47363 * 59.99579 * 1 2 3 28 28 H 1.08995 * 109.47350 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47154 * 299.99852 * 1 2 3 30 30 H 1.08999 * 109.46702 * 240.00327 * 2 1 3 31 31 H 1.08996 * 109.46936 * 120.00289 * 2 1 3 32 32 H 1.08004 * 126.41701 * 359.96300 * 4 3 2 33 33 H 1.08007 * 125.82321 * 179.97438 * 5 4 3 34 34 H 0.96999 * 120.00044 * 359.97438 * 10 8 7 35 35 H 1.09005 * 109.87612 * 338.85652 * 13 11 10 36 36 H 1.08998 * 109.88722 * 99.86987 * 13 11 10 37 37 H 0.96999 * 119.99523 * 179.97438 * 18 17 15 38 38 H 1.08998 * 110.36698 * 142.96768 * 23 14 13 39 39 H 1.09000 * 110.36736 * 265.18523 * 23 14 13 40 40 H 1.09001 * 109.46836 * 172.19539 * 26 24 23 41 41 H 1.08992 * 109.47189 * 292.19130 * 26 24 23 42 42 H 1.08994 * 109.47309 * 52.19936 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3759 2.1078 -1.0851 5 6 2.7662 3.3270 -0.6391 6 7 2.6446 3.3471 0.6861 7 6 2.1991 2.1782 1.0954 8 6 1.9347 1.7964 2.4943 9 8 1.5219 0.6822 2.7529 10 7 2.1557 2.6804 3.4875 11 6 1.8924 2.3012 4.8778 12 1 2.1557 1.2572 5.0478 13 6 0.4152 2.5581 5.2434 14 7 0.3908 3.0881 6.6146 15 6 -0.7305 3.4635 7.3052 16 1 -0.6425 3.8422 8.3128 17 6 -1.9801 3.3576 6.7102 18 7 -2.0873 2.8958 5.4823 19 14 -3.5095 3.8703 7.6520 20 1 -3.1213 4.3521 9.0020 21 1 -4.2008 4.9605 6.9178 22 1 -4.4225 2.7066 7.7849 23 6 1.7732 3.1474 7.1232 24 6 2.6591 3.2309 5.8551 25 1 2.6995 4.2510 5.4732 26 6 4.0652 2.6952 6.1322 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.3551 1.7776 -2.1132 33 1 3.1128 4.1441 -1.2547 34 1 2.4892 3.5677 3.2816 35 1 -0.0152 3.2869 4.5566 36 1 -0.1466 1.6254 5.1940 37 1 -2.9605 2.8214 5.0667 38 1 1.9121 4.0340 7.7419 39 1 2.0069 2.2478 7.6927 40 1 4.6221 2.6357 5.1971 41 1 4.5804 3.3658 6.8198 42 1 3.9948 1.7026 6.5769 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079635585.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:56 Heat of formation + Delta-G solvation = 28.024914 kcal Electronic energy + Delta-G solvation = -23981.868478 eV Core-core repulsion = 20576.794609 eV Total energy + Delta-G solvation = -3405.073869 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.26954 -40.77543 -39.05266 -36.24556 -35.49169 -34.26702 -32.19677 -31.46414 -30.81018 -29.31590 -27.39029 -25.78640 -24.94814 -23.90089 -22.46430 -21.92195 -21.53775 -20.64576 -18.92155 -18.74318 -17.53844 -17.22689 -16.96842 -16.66539 -15.81260 -15.66086 -15.47886 -15.23855 -14.79426 -14.73924 -14.53974 -14.36626 -14.09170 -13.76529 -13.59446 -13.35049 -13.08969 -13.00266 -12.90552 -12.63055 -12.37828 -12.15825 -12.04719 -11.87485 -11.67273 -11.48559 -11.32726 -11.13247 -10.84827 -10.77556 -10.14517 -9.48203 -8.94273 -7.85919 -5.24123 0.34845 1.42535 1.43943 1.45476 1.55887 1.67084 2.25895 2.40530 2.48643 3.28409 3.32906 3.59667 3.72851 3.75286 3.88598 4.01880 4.03516 4.08409 4.32163 4.39880 4.44744 4.48201 4.59346 4.69327 4.70319 4.78376 4.87936 5.04877 5.06914 5.10311 5.18046 5.27259 5.27876 5.43444 5.48437 5.56699 5.68218 5.75023 5.94045 6.14811 6.37569 6.86152 7.04110 7.11596 7.74003 8.38034 9.23648 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015901 B = 0.004661 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.500376 B = 6005.725099 C = 7008.602958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.095 3.905 3 N -0.413 5.413 4 C -0.007 4.007 5 C -0.048 4.048 6 N -0.466 5.466 7 C 0.104 3.896 8 C 0.599 3.401 9 O -0.568 6.568 10 N -0.682 5.682 11 C 0.138 3.862 12 H 0.082 0.918 13 C 0.191 3.809 14 N -0.628 5.628 15 C -0.241 4.241 16 H 0.091 0.909 17 C -0.071 4.071 18 N -0.954 5.954 19 Si 0.981 3.019 20 H -0.259 1.259 21 H -0.293 1.293 22 H -0.294 1.294 23 C 0.134 3.866 24 C -0.095 4.095 25 H 0.087 0.913 26 C -0.128 4.128 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.023 0.977 30 H 0.139 0.861 31 H 0.088 0.912 32 H 0.231 0.769 33 H 0.207 0.793 34 H 0.415 0.585 35 H 0.011 0.989 36 H -0.005 1.005 37 H 0.243 0.757 38 H 0.057 0.943 39 H 0.031 0.969 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.635 -2.813 -14.018 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.026 4.026 3 N -0.094 5.094 4 C -0.146 4.146 5 C -0.201 4.201 6 N -0.189 5.189 7 C -0.154 4.154 8 C 0.384 3.616 9 O -0.447 6.447 10 N -0.332 5.332 11 C 0.032 3.968 12 H 0.100 0.900 13 C 0.065 3.935 14 N -0.355 5.355 15 C -0.369 4.369 16 H 0.109 0.891 17 C -0.264 4.264 18 N -0.603 5.603 19 Si 0.810 3.190 20 H -0.183 1.183 21 H -0.220 1.220 22 H -0.222 1.222 23 C 0.009 3.991 24 C -0.115 4.115 25 H 0.105 0.895 26 C -0.186 4.186 27 H 0.091 0.909 28 H 0.115 0.885 29 H 0.042 0.958 30 H 0.157 0.843 31 H 0.106 0.894 32 H 0.248 0.752 33 H 0.223 0.777 34 H 0.251 0.749 35 H 0.029 0.971 36 H 0.013 0.987 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.244 -3.136 -13.205 18.963 hybrid contribution -1.564 -0.075 -0.185 1.577 sum 11.679 -3.211 -13.390 18.056 Atomic orbital electron populations 1.22028 0.94014 1.04124 1.01513 1.22274 0.95923 0.78010 1.06371 1.45525 1.44289 1.13534 1.06007 1.23730 1.03577 0.93097 0.94179 1.23080 1.07737 0.99194 0.90128 1.70134 1.15598 1.18396 1.14744 1.22276 1.13345 0.89676 0.90066 1.16829 0.77218 0.84444 0.83107 1.90767 1.47759 1.22030 1.84161 1.45465 1.65286 1.16992 1.05447 1.22185 0.95695 0.99223 0.79649 0.89983 1.21062 0.91294 0.95202 0.85979 1.44739 1.02465 1.75424 1.12843 1.19586 0.84782 1.35151 0.97414 0.89134 1.25755 1.00888 1.02133 0.97604 1.70267 1.22448 1.52988 1.14640 0.84959 0.79010 0.76839 0.78240 1.18302 1.22015 1.22165 1.21862 0.83072 0.99238 0.94928 1.22557 0.95609 0.98927 0.94407 0.89459 1.21648 0.93160 1.01390 1.02366 0.90857 0.88538 0.95814 0.84344 0.89409 0.75219 0.77667 0.74851 0.97077 0.98702 0.94762 0.92518 0.95096 0.91752 0.90140 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 10.24 71.98 0.74 -2.90 16 2 C 0.09 1.97 6.18 86.38 0.53 2.50 16 3 N -0.41 -10.29 2.76 -516.46 -1.42 -11.71 16 4 C -0.01 -0.12 11.53 83.52 0.96 0.84 16 5 C -0.05 -1.04 11.85 83.88 0.99 -0.04 16 6 N -0.47 -14.23 10.89 -189.53 -2.06 -16.29 16 7 C 0.10 3.40 7.78 136.28 1.06 4.46 16 8 C 0.60 23.25 7.81 86.66 0.68 23.93 16 9 O -0.57 -24.79 14.25 -4.05 -0.06 -24.85 16 10 N -0.68 -25.51 5.13 -440.18 -2.26 -27.76 16 11 C 0.14 5.65 2.71 46.18 0.12 5.77 16 12 H 0.08 3.47 7.59 -2.39 -0.02 3.46 16 13 C 0.19 10.34 5.12 86.73 0.44 10.79 16 14 N -0.63 -33.75 3.39 -692.00 -2.35 -36.10 16 15 C -0.24 -13.95 10.28 84.03 0.86 -13.08 16 16 H 0.09 4.92 7.83 -2.91 -0.02 4.89 16 17 C -0.07 -4.25 5.49 84.86 0.47 -3.79 16 18 N -0.95 -61.33 10.31 21.65 0.22 -61.11 16 19 Si 0.98 47.57 29.55 68.60 2.03 49.60 16 20 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 22 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 23 C 0.13 5.46 6.70 86.86 0.58 6.04 16 24 C -0.10 -3.21 3.25 -9.40 -0.03 -3.24 16 25 H 0.09 2.84 8.00 -2.39 -0.02 2.82 16 26 C -0.13 -3.19 9.31 71.98 0.67 -2.52 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.02 0.77 7.87 -2.39 -0.02 0.75 16 30 H 0.14 1.51 8.13 -2.39 -0.02 1.49 16 31 H 0.09 2.26 6.63 -2.39 -0.02 2.25 16 32 H 0.23 1.52 8.06 -2.91 -0.02 1.49 16 33 H 0.21 2.89 8.06 -2.91 -0.02 2.87 16 34 H 0.41 14.05 8.20 -92.71 -0.76 13.29 16 35 H 0.01 0.68 7.27 -2.38 -0.02 0.66 16 36 H -0.01 -0.33 7.50 -2.39 -0.02 -0.35 16 37 H 0.24 15.26 8.31 -92.71 -0.77 14.48 16 38 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.03 1.23 7.99 -2.39 -0.02 1.21 16 40 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 42 H 0.06 1.42 8.07 -2.39 -0.02 1.40 16 Total: -1.00 -80.76 346.07 2.44 -78.32 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.26 Total: 21.15 kcal Atomic # 6 Polarization: 20.68 SS G_CDS: 8.08 Total: 28.77 kcal Atomic # 7 Polarization: -145.11 SS G_CDS: -7.87 Total: -152.98 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.06 Total: -24.85 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -80.76 2.44 -78.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079635585.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.344 kcal (2) G-P(sol) polarization free energy of solvation -80.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds