Wall clock time and date at job start Tue Mar 31 2020 02:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39671 * 127.32117 * 2 1 4 4 N 1.30859 * 107.86645 * 180.02562 * 3 2 1 5 5 N 1.28456 * 110.92349 * 359.71301 * 4 3 2 6 6 C 1.46499 * 125.18703 * 180.28418 * 5 4 3 7 7 C 1.36592 * 109.61723 * 0.45998 * 5 4 3 8 8 C 1.47165 * 126.88203 * 179.81418 * 7 5 4 9 9 O 1.21626 * 119.99643 * 98.45533 * 8 7 5 10 10 N 1.34772 * 120.00121 * 278.44936 * 8 7 5 11 11 C 1.46498 * 119.99817 * 174.74091 * 10 8 7 12 12 H 1.09005 * 110.64202 * 31.86838 * 11 10 8 13 13 C 1.54319 * 110.87847 * 268.61671 * 11 10 8 14 14 N 1.47017 * 107.27387 * 219.37676 * 13 11 10 15 15 C 1.36944 * 125.65126 * 178.89152 * 14 13 11 16 16 H 1.07995 * 120.00007 * 174.91417 * 15 14 13 17 17 C 1.38807 * 119.99681 * 354.91857 * 15 14 13 18 18 N 1.31619 * 120.00430 * 6.54502 * 17 15 14 19 19 Si 1.86799 * 119.99892 * 186.54806 * 17 15 14 20 20 H 1.48500 * 109.47422 * 94.98634 * 19 17 15 21 21 H 1.48499 * 109.47145 * 214.98842 * 19 17 15 22 22 H 1.48499 * 109.47178 * 334.98660 * 19 17 15 23 23 C 1.47432 * 108.70516 * 358.93433 * 14 13 11 24 24 C 1.54909 * 104.82901 * 24.13168 * 23 14 13 25 25 H 1.08994 * 111.03906 * 81.07796 * 24 23 14 26 26 C 1.52995 * 111.00475 * 204.91909 * 24 23 14 27 27 H 1.08997 * 109.47639 * 269.98144 * 1 2 3 28 28 H 1.09001 * 109.47449 * 29.98653 * 1 2 3 29 29 H 1.08998 * 109.47052 * 149.97969 * 1 2 3 30 30 H 1.07997 * 126.07009 * 359.97438 * 3 2 1 31 31 H 1.09007 * 109.46695 * 274.91673 * 6 5 4 32 32 H 1.08992 * 109.47679 * 34.92154 * 6 5 4 33 33 H 1.09003 * 109.46695 * 154.92103 * 6 5 4 34 34 H 0.96996 * 120.00385 * 354.74640 * 10 8 7 35 35 H 1.09005 * 109.87945 * 338.78738 * 13 11 10 36 36 H 1.08995 * 109.88551 * 99.95545 * 13 11 10 37 37 H 0.96992 * 120.00337 * 180.02562 * 18 17 15 38 38 H 1.08995 * 110.36458 * 265.29360 * 23 14 13 39 39 H 1.08994 * 110.36883 * 142.96774 * 23 14 13 40 40 H 1.09003 * 109.47186 * 172.19818 * 26 24 23 41 41 H 1.08997 * 109.46894 * 292.19371 * 26 24 23 42 42 H 1.09001 * 109.47343 * 52.19294 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3537 1.1107 0.0000 4 7 3.5876 0.6749 -0.0006 5 7 3.6205 -0.6092 0.0051 6 6 4.8391 -1.4224 0.0122 7 6 2.3461 -1.1007 -0.0005 8 6 1.9455 -2.5168 -0.0007 9 8 1.6260 -3.0584 1.0403 10 7 1.9327 -3.2133 -1.1544 11 6 1.6462 -4.6499 -1.1395 12 1 0.9575 -4.8960 -0.3313 13 6 2.9482 -5.4691 -1.0158 14 7 2.8099 -6.6432 -1.8898 15 6 3.7589 -7.6117 -2.0816 16 1 3.5307 -8.4799 -2.6819 17 6 5.0140 -7.4774 -1.5042 18 7 5.2521 -6.4880 -0.6695 19 14 6.3654 -8.7009 -1.9120 20 1 7.2045 -8.1630 -3.0128 21 1 7.2091 -8.9251 -0.7107 22 1 5.7569 -9.9872 -2.3366 23 6 1.4807 -6.6047 -2.5265 24 6 1.0747 -5.1099 -2.5067 25 1 1.5419 -4.5667 -3.3281 26 6 -0.4468 -4.9543 -2.5454 27 1 -0.3634 -0.0003 1.0276 28 1 -0.3634 0.8901 -0.5136 29 1 -0.3633 -0.8898 -0.5141 30 1 2.0450 2.1456 -0.0004 31 1 5.1932 -1.5552 -1.0102 32 1 5.6073 -0.9208 0.6005 33 1 4.6233 -2.3964 0.4514 34 1 2.1133 -2.7635 -1.9946 35 1 3.7975 -4.8660 -1.3369 36 1 3.0877 -5.7898 0.0165 37 1 6.1292 -6.3939 -0.2664 38 1 0.7685 -7.1989 -1.9539 39 1 1.5408 -6.9680 -3.5524 40 1 -0.7091 -3.9076 -2.3914 41 1 -0.8212 -5.2838 -3.5146 42 1 -0.8943 -5.5607 -1.7579 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080283580.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:45 Heat of formation + Delta-G solvation = 65.899195 kcal Electronic energy + Delta-G solvation = -24119.259572 eV Core-core repulsion = 20715.828055 eV Total energy + Delta-G solvation = -3403.431517 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.45445 -39.43115 -37.51998 -34.02627 -33.93113 -32.76072 -31.73925 -30.44306 -28.71396 -27.55444 -26.10528 -25.69155 -24.01650 -22.48496 -20.91302 -20.36592 -20.05793 -19.35381 -17.65726 -16.97759 -16.40953 -15.71720 -15.66705 -15.00610 -14.48879 -14.41471 -13.80014 -13.54940 -13.38116 -13.24366 -13.12446 -12.85341 -12.80373 -12.53978 -12.43192 -12.14619 -12.05830 -11.76295 -11.42045 -11.08575 -10.84623 -10.77017 -10.58217 -10.47460 -10.08700 -10.01133 -9.86995 -9.74784 -9.11483 -8.70533 -8.64652 -8.59726 -6.90852 -5.78612 -3.11973 1.71617 2.23960 2.67283 2.95345 3.35555 3.39162 3.42270 3.43574 4.44246 4.52902 4.72546 5.02077 5.09077 5.16047 5.19805 5.24489 5.36352 5.38659 5.48765 5.54075 5.64753 5.65566 5.68885 5.90639 5.92190 5.93431 6.05224 6.09666 6.13137 6.29148 6.41831 6.56704 6.57407 6.62056 6.77126 6.86526 7.41454 7.50454 7.71286 7.74879 8.09637 8.16974 8.32997 9.14119 9.74916 10.39816 11.33049 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017212 B = 0.004884 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.410285 B = 5731.110284 C = 6986.581910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.165 4.165 3 C 0.000 4.000 4 N -0.287 5.287 5 N -0.268 5.268 6 C 0.085 3.915 7 C -0.024 4.024 8 C 0.591 3.409 9 O -0.520 6.520 10 N -0.698 5.698 11 C 0.117 3.883 12 H 0.093 0.907 13 C 0.172 3.828 14 N -0.605 5.605 15 C -0.230 4.230 16 H 0.080 0.920 17 C -0.006 4.006 18 N -0.920 5.920 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.141 3.859 24 C -0.113 4.113 25 H 0.077 0.923 26 C -0.138 4.138 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.183 0.817 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.399 0.601 35 H 0.052 0.948 36 H 0.046 0.954 37 H 0.252 0.748 38 H 0.023 0.977 39 H 0.044 0.956 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.092 12.654 -2.421 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.176 4.176 3 C -0.177 4.177 4 N -0.118 5.118 5 N -0.056 5.056 6 C -0.055 4.055 7 C -0.153 4.153 8 C 0.373 3.627 9 O -0.394 6.394 10 N -0.348 5.348 11 C 0.012 3.988 12 H 0.111 0.889 13 C 0.047 3.953 14 N -0.332 5.332 15 C -0.358 4.358 16 H 0.098 0.902 17 C -0.202 4.202 18 N -0.568 5.568 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.206 1.206 23 C 0.014 3.986 24 C -0.133 4.133 25 H 0.096 0.904 26 C -0.196 4.196 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.200 0.800 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.233 0.767 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.041 0.959 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.811 12.418 -1.575 14.251 hybrid contribution 0.262 -0.627 -0.548 0.873 sum -6.549 11.791 -2.123 13.654 Atomic orbital electron populations 1.20083 0.88549 1.02355 1.02274 1.20637 0.96760 0.90741 1.09482 1.23379 0.87865 0.99725 1.06755 1.73120 1.24417 0.93489 1.20804 1.45611 1.05752 1.03610 1.50656 1.22282 0.83402 0.94906 1.04957 1.21493 0.86011 0.94991 1.12834 1.16960 0.78196 0.83142 0.84372 1.90849 1.47378 1.69420 1.31707 1.45926 1.70529 1.09908 1.08445 1.22622 1.00026 0.78214 0.97909 0.88918 1.21476 0.91089 0.87367 0.95405 1.44401 1.12544 1.25736 1.50526 1.19080 0.90571 0.98921 1.27189 0.90222 1.24810 0.97622 0.98529 0.99260 1.69966 1.21761 1.32630 1.32416 0.86114 0.82077 0.80294 0.77391 1.21637 1.21741 1.20574 1.21608 0.88279 0.92002 0.96711 1.22617 0.95223 0.98874 0.96588 0.90416 1.21702 0.95038 1.01198 1.01621 0.91299 0.91244 0.91919 0.80001 0.89255 0.88515 0.88026 0.76704 0.92995 0.93606 0.93774 0.95911 0.93802 0.93043 0.92703 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.28 36.00 0.37 -0.42 16 2 C -0.17 -2.21 6.30 -104.03 -0.65 -2.86 16 3 C 0.00 0.00 12.00 -17.43 -0.21 -0.21 16 4 N -0.29 -4.17 11.90 30.59 0.36 -3.81 16 5 N -0.27 -3.97 3.75 -63.88 -0.24 -4.21 16 6 C 0.08 1.09 11.21 59.85 0.67 1.76 16 7 C -0.02 -0.37 6.71 -82.06 -0.55 -0.92 16 8 C 0.59 10.17 6.77 -12.64 -0.09 10.08 16 9 O -0.52 -10.91 16.72 5.25 0.09 -10.82 16 10 N -0.70 -11.04 5.11 -53.18 -0.27 -11.31 16 11 C 0.12 2.13 2.82 -66.09 -0.19 1.95 16 12 H 0.09 1.81 7.38 -51.93 -0.38 1.43 16 13 C 0.17 4.06 5.14 -3.07 -0.02 4.05 16 14 N -0.61 -14.95 3.39 -170.08 -0.58 -15.52 16 15 C -0.23 -6.24 10.27 -15.06 -0.15 -6.39 16 16 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 17 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 18 N -0.92 -26.29 10.35 55.49 0.57 -25.72 16 19 Si 0.91 21.65 29.56 -169.99 -5.02 16.63 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.14 2.75 6.70 -2.53 -0.02 2.73 16 24 C -0.11 -1.81 3.27 -88.47 -0.29 -2.09 16 25 H 0.08 1.19 8.01 -51.93 -0.42 0.78 16 26 C -0.14 -1.76 9.31 37.16 0.35 -1.42 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.68 8.07 -51.93 -0.42 0.26 16 30 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.10 1.48 7.66 -51.93 -0.40 1.08 16 34 H 0.40 5.42 8.55 -40.82 -0.35 5.07 16 35 H 0.05 1.32 7.17 -51.93 -0.37 0.95 16 36 H 0.05 1.26 7.62 -51.93 -0.40 0.86 16 37 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 38 H 0.02 0.45 7.98 -51.93 -0.41 0.03 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.74 8.07 -51.93 -0.42 0.32 16 LS Contribution 350.08 15.07 5.28 5.28 Total: -1.00 -32.69 350.08 -7.18 -39.87 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.50 Total: 3.62 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -0.87 Total: 5.99 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: -0.15 Total: -60.57 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.69 -7.18 -39.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080283580.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.768 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds