Wall clock time and date at job start Tue Mar 31 2020 02:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39671 * 127.32117 * 2 1 4 4 N 1.30859 * 107.86645 * 180.02562 * 3 2 1 5 5 N 1.28456 * 110.92349 * 359.71301 * 4 3 2 6 6 C 1.46499 * 125.18703 * 180.28418 * 5 4 3 7 7 C 1.36592 * 109.61723 * 0.45998 * 5 4 3 8 8 C 1.47165 * 126.88203 * 179.81418 * 7 5 4 9 9 O 1.21626 * 119.99643 * 98.45533 * 8 7 5 10 10 N 1.34772 * 120.00121 * 278.44936 * 8 7 5 11 11 C 1.46498 * 119.99817 * 174.74091 * 10 8 7 12 12 H 1.09005 * 110.64202 * 31.86838 * 11 10 8 13 13 C 1.54319 * 110.87847 * 268.61671 * 11 10 8 14 14 N 1.47017 * 107.27387 * 219.37676 * 13 11 10 15 15 C 1.36944 * 125.65126 * 178.89152 * 14 13 11 16 16 H 1.07995 * 120.00007 * 174.91417 * 15 14 13 17 17 C 1.38807 * 119.99681 * 354.91857 * 15 14 13 18 18 N 1.31619 * 120.00430 * 6.54502 * 17 15 14 19 19 Si 1.86799 * 119.99892 * 186.54806 * 17 15 14 20 20 H 1.48500 * 109.47422 * 94.98634 * 19 17 15 21 21 H 1.48499 * 109.47145 * 214.98842 * 19 17 15 22 22 H 1.48499 * 109.47178 * 334.98660 * 19 17 15 23 23 C 1.47432 * 108.70516 * 358.93433 * 14 13 11 24 24 C 1.54909 * 104.82901 * 24.13168 * 23 14 13 25 25 H 1.08994 * 111.03906 * 81.07796 * 24 23 14 26 26 C 1.52995 * 111.00475 * 204.91909 * 24 23 14 27 27 H 1.08997 * 109.47639 * 269.98144 * 1 2 3 28 28 H 1.09001 * 109.47449 * 29.98653 * 1 2 3 29 29 H 1.08998 * 109.47052 * 149.97969 * 1 2 3 30 30 H 1.07997 * 126.07009 * 359.97438 * 3 2 1 31 31 H 1.09007 * 109.46695 * 274.91673 * 6 5 4 32 32 H 1.08992 * 109.47679 * 34.92154 * 6 5 4 33 33 H 1.09003 * 109.46695 * 154.92103 * 6 5 4 34 34 H 0.96996 * 120.00385 * 354.74640 * 10 8 7 35 35 H 1.09005 * 109.87945 * 338.78738 * 13 11 10 36 36 H 1.08995 * 109.88551 * 99.95545 * 13 11 10 37 37 H 0.96992 * 120.00337 * 180.02562 * 18 17 15 38 38 H 1.08995 * 110.36458 * 265.29360 * 23 14 13 39 39 H 1.08994 * 110.36883 * 142.96774 * 23 14 13 40 40 H 1.09003 * 109.47186 * 172.19818 * 26 24 23 41 41 H 1.08997 * 109.46894 * 292.19371 * 26 24 23 42 42 H 1.09001 * 109.47343 * 52.19294 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3537 1.1107 0.0000 4 7 3.5876 0.6749 -0.0006 5 7 3.6205 -0.6092 0.0051 6 6 4.8391 -1.4224 0.0122 7 6 2.3461 -1.1007 -0.0005 8 6 1.9455 -2.5168 -0.0007 9 8 1.6260 -3.0584 1.0403 10 7 1.9327 -3.2133 -1.1544 11 6 1.6462 -4.6499 -1.1395 12 1 0.9575 -4.8960 -0.3313 13 6 2.9482 -5.4691 -1.0158 14 7 2.8099 -6.6432 -1.8898 15 6 3.7589 -7.6117 -2.0816 16 1 3.5307 -8.4799 -2.6819 17 6 5.0140 -7.4774 -1.5042 18 7 5.2521 -6.4880 -0.6695 19 14 6.3654 -8.7009 -1.9120 20 1 7.2045 -8.1630 -3.0128 21 1 7.2091 -8.9251 -0.7107 22 1 5.7569 -9.9872 -2.3366 23 6 1.4807 -6.6047 -2.5265 24 6 1.0747 -5.1099 -2.5067 25 1 1.5419 -4.5667 -3.3281 26 6 -0.4468 -4.9543 -2.5454 27 1 -0.3634 -0.0003 1.0276 28 1 -0.3634 0.8901 -0.5136 29 1 -0.3633 -0.8898 -0.5141 30 1 2.0450 2.1456 -0.0004 31 1 5.1932 -1.5552 -1.0102 32 1 5.6073 -0.9208 0.6005 33 1 4.6233 -2.3964 0.4514 34 1 2.1133 -2.7635 -1.9946 35 1 3.7975 -4.8660 -1.3369 36 1 3.0877 -5.7898 0.0165 37 1 6.1292 -6.3939 -0.2664 38 1 0.7685 -7.1989 -1.9539 39 1 1.5408 -6.9680 -3.5524 40 1 -0.7091 -3.9076 -2.3914 41 1 -0.8212 -5.2838 -3.5146 42 1 -0.8943 -5.5607 -1.7579 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080283580.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:45 Heat of formation + Delta-G solvation = 43.487206 kcal Electronic energy + Delta-G solvation = -24120.231429 eV Core-core repulsion = 20715.828055 eV Total energy + Delta-G solvation = -3404.403374 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.53513 -40.90358 -39.11960 -35.70565 -34.96593 -34.38749 -32.85235 -32.17176 -30.01974 -28.98570 -27.38818 -27.07844 -25.58950 -23.92243 -22.06344 -21.80388 -21.65482 -20.63382 -18.93488 -18.84433 -17.80227 -17.01102 -16.98345 -16.69364 -16.02439 -15.66958 -15.53565 -14.88595 -14.62109 -14.38162 -14.31460 -14.23630 -14.10518 -13.75577 -13.53320 -13.37591 -13.35581 -13.08343 -13.05432 -12.87048 -12.61786 -12.20339 -12.14221 -11.89245 -11.71162 -11.64415 -11.49058 -11.29904 -10.74312 -10.22472 -10.15596 -9.68465 -8.93170 -7.87578 -5.23458 0.57093 1.00920 1.45505 1.46393 1.55562 1.68545 1.72217 2.07210 2.48460 3.31381 3.40762 3.53377 3.65147 3.75992 4.00772 4.07507 4.12004 4.17463 4.19703 4.44384 4.46012 4.49456 4.58802 4.65280 4.70068 4.86982 4.88237 5.03698 5.06588 5.09100 5.11364 5.17810 5.27850 5.42239 5.48432 5.55537 5.60152 5.71750 5.74204 6.15270 6.33881 6.96274 7.04100 7.07146 7.73889 8.37953 9.22608 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017212 B = 0.004884 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.410285 B = 5731.110284 C = 6986.581910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.158 4.158 3 C 0.006 3.994 4 N -0.302 5.302 5 N -0.277 5.277 6 C 0.085 3.915 7 C -0.054 4.054 8 C 0.598 3.402 9 O -0.564 6.564 10 N -0.684 5.684 11 C 0.133 3.867 12 H 0.080 0.920 13 C 0.187 3.813 14 N -0.627 5.627 15 C -0.243 4.243 16 H 0.087 0.913 17 C -0.063 4.063 18 N -0.950 5.950 19 Si 0.976 3.024 20 H -0.285 1.285 21 H -0.298 1.298 22 H -0.267 1.267 23 C 0.132 3.868 24 C -0.093 4.093 25 H 0.091 0.909 26 C -0.130 4.130 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.222 0.778 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.413 0.587 35 H 0.026 0.974 36 H -0.009 1.009 37 H 0.246 0.754 38 H 0.027 0.973 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.579 14.143 -4.240 17.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.169 4.169 3 C -0.171 4.171 4 N -0.132 5.132 5 N -0.066 5.066 6 C -0.055 4.055 7 C -0.182 4.182 8 C 0.382 3.618 9 O -0.442 6.442 10 N -0.334 5.334 11 C 0.027 3.973 12 H 0.098 0.902 13 C 0.061 3.939 14 N -0.354 5.354 15 C -0.372 4.372 16 H 0.104 0.896 17 C -0.256 4.256 18 N -0.598 5.598 19 Si 0.805 3.195 20 H -0.212 1.212 21 H -0.225 1.225 22 H -0.192 1.192 23 C 0.007 3.993 24 C -0.113 4.113 25 H 0.109 0.891 26 C -0.188 4.188 27 H 0.089 0.911 28 H 0.120 0.880 29 H 0.076 0.924 30 H 0.238 0.762 31 H 0.117 0.883 32 H 0.133 0.867 33 H 0.094 0.906 34 H 0.250 0.750 35 H 0.044 0.956 36 H 0.009 0.991 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.329 13.912 -3.449 16.578 hybrid contribution 0.692 -1.080 0.041 1.283 sum -7.636 12.833 -3.408 15.317 Atomic orbital electron populations 1.20203 0.86532 1.03750 1.02783 1.21096 0.98123 0.90098 1.07559 1.24044 0.86848 1.01207 1.05003 1.73118 1.25681 0.93162 1.21263 1.45709 1.05699 1.03868 1.51295 1.22286 0.83605 0.93876 1.05709 1.21383 0.87100 0.94247 1.15511 1.17208 0.76976 0.83904 0.83713 1.90821 1.49429 1.70672 1.33232 1.45725 1.69872 1.08793 1.08988 1.22208 0.96861 0.78848 0.99369 0.90168 1.21125 0.93109 0.87573 0.92129 1.44707 1.14113 1.25445 1.51094 1.19498 0.91355 0.99712 1.26639 0.89552 1.25639 0.99894 1.00562 0.99485 1.70195 1.21685 1.34440 1.33526 0.85089 0.79084 0.78682 0.76670 1.21157 1.22545 1.19179 1.21864 0.85879 0.94720 0.96807 1.22545 0.97808 0.96023 0.94945 0.89058 1.21662 0.91763 1.02389 1.02940 0.91141 0.88004 0.92372 0.76191 0.88275 0.86667 0.90614 0.75044 0.95622 0.99099 0.94485 0.95554 0.92556 0.91404 0.90288 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 10.28 71.23 0.73 -0.65 16 2 C -0.16 -3.90 6.30 -19.48 -0.12 -4.02 16 3 C 0.01 0.13 12.00 85.18 1.02 1.15 16 4 N -0.30 -8.29 11.90 -57.14 -0.68 -8.97 16 5 N -0.28 -8.14 3.75 -356.02 -1.33 -9.47 16 6 C 0.09 2.27 11.21 127.77 1.43 3.70 16 7 C -0.05 -1.65 6.71 40.79 0.27 -1.38 16 8 C 0.60 21.03 6.77 86.59 0.59 21.62 16 9 O -0.56 -24.72 16.72 -4.11 -0.07 -24.79 16 10 N -0.68 -21.72 5.11 -440.43 -2.25 -23.97 16 11 C 0.13 4.92 2.82 46.18 0.13 5.05 16 12 H 0.08 3.22 7.38 -2.38 -0.02 3.21 16 13 C 0.19 9.27 5.14 86.73 0.45 9.72 16 14 N -0.63 -31.63 3.39 -692.01 -2.35 -33.98 16 15 C -0.24 -13.43 10.27 84.03 0.86 -12.57 16 16 H 0.09 4.52 7.84 -2.91 -0.02 4.50 16 17 C -0.06 -3.53 5.48 84.86 0.46 -3.07 16 18 N -0.95 -56.81 10.35 21.65 0.22 -56.58 16 19 Si 0.98 45.30 29.56 68.60 2.03 47.32 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 21 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 23 C 0.13 5.06 6.70 86.85 0.58 5.64 16 24 C -0.09 -2.82 3.27 -9.40 -0.03 -2.85 16 25 H 0.09 2.56 8.01 -2.39 -0.02 2.54 16 26 C -0.13 -2.90 9.31 71.98 0.67 -2.23 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 1.13 8.07 -2.39 -0.02 1.11 16 30 H 0.22 2.98 8.06 -2.91 -0.02 2.95 16 31 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 32 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.08 2.40 7.66 -2.39 -0.02 2.38 16 34 H 0.41 10.86 8.55 -92.71 -0.79 10.06 16 35 H 0.03 1.39 7.17 -2.38 -0.02 1.37 16 36 H -0.01 -0.55 7.62 -2.39 -0.02 -0.57 16 37 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 38 H 0.03 1.00 7.98 -2.39 -0.02 0.99 16 39 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.05 1.25 8.07 -2.39 -0.02 1.23 16 Total: -1.00 -74.32 350.08 2.85 -71.47 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.23 Total: 18.85 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 7.05 Total: 20.11 kcal Atomic # 7 Polarization: -126.58 SS G_CDS: -6.39 Total: -132.97 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.07 Total: -24.79 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -74.32 2.85 -71.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080283580.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.962 kcal (2) G-P(sol) polarization free energy of solvation -74.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds