Wall clock time and date at job start Tue Mar 31 2020 03:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47249 * 2 1 4 4 C 1.50699 * 109.46759 * 119.99729 * 2 1 3 5 5 O 1.21287 * 119.99872 * 120.00338 * 4 2 1 6 6 N 1.34775 * 120.00096 * 299.99883 * 4 2 1 7 7 C 1.47022 * 125.64808 * 180.02562 * 6 4 2 8 8 C 1.54331 * 107.27324 * 178.89554 * 7 6 4 9 9 H 1.08997 * 110.71553 * 96.16664 * 8 7 6 10 10 C 1.52991 * 110.87265 * 219.37157 * 8 7 6 11 11 C 1.55163 * 102.93857 * 337.80780 * 8 7 6 12 12 H 1.09000 * 111.00164 * 277.38991 * 11 8 7 13 13 N 1.46496 * 111.00044 * 153.57633 * 11 8 7 14 14 C 1.36945 * 119.99718 * 154.99848 * 13 11 8 15 15 H 1.07997 * 119.99756 * 359.97438 * 14 13 11 16 16 C 1.38805 * 119.99878 * 179.97438 * 14 13 11 17 17 N 1.31624 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47187 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47141 * 300.00154 * 18 16 14 21 21 H 1.48498 * 109.47018 * 60.00200 * 18 16 14 22 22 C 1.47425 * 125.65127 * 359.94922 * 6 4 2 23 23 N 1.46494 * 109.47197 * 239.99545 * 2 1 3 24 24 C 1.34949 * 126.04014 * 325.00080 * 23 2 1 25 25 C 1.35319 * 107.74814 * 179.97438 * 24 23 2 26 26 C 1.39870 * 107.91594 * 0.02562 * 25 24 23 27 27 N 1.30831 * 108.20716 * 359.73560 * 26 25 24 28 28 H 1.09001 * 109.47472 * 300.00312 * 1 2 3 29 29 H 1.09005 * 109.47049 * 60.00547 * 1 2 3 30 30 H 1.09004 * 109.47249 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.88776 * 59.47822 * 7 6 4 32 32 H 1.09002 * 109.88571 * 298.31393 * 7 6 4 33 33 H 1.08998 * 109.47058 * 173.60652 * 10 8 7 34 34 H 1.08997 * 109.47371 * 293.60984 * 10 8 7 35 35 H 1.09004 * 109.47336 * 53.60852 * 10 8 7 36 36 H 0.96996 * 120.00499 * 334.99578 * 13 11 8 37 37 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 38 38 H 1.08998 * 110.36657 * 85.33439 * 22 6 4 39 39 H 1.09000 * 110.36657 * 323.01317 * 22 6 4 40 40 H 1.07994 * 126.12615 * 359.96108 * 24 23 2 41 41 H 1.07994 * 126.04145 * 180.02562 * 25 24 23 42 42 H 1.08004 * 125.89253 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7066 -0.2498 2.4546 7 6 2.1265 -0.8427 3.7328 8 6 1.5407 0.0346 4.8592 9 1 0.6030 -0.3834 5.2253 10 6 2.5435 0.1937 6.0036 11 6 1.2965 1.3930 4.1503 12 1 2.2119 1.9835 4.1115 13 7 0.2199 2.1407 4.8046 14 6 0.1740 3.5055 4.7023 15 1 0.9316 4.0306 4.1397 16 6 -0.8464 4.2139 5.3218 17 7 -1.7695 3.5739 6.0079 18 14 -0.9087 6.0757 5.1829 19 1 -2.0869 6.5885 5.9272 20 1 0.3314 6.6567 5.7572 21 1 -1.0204 6.4620 3.7534 22 6 0.8718 0.9328 2.7337 23 7 2.0183 -0.6907 -1.1961 24 6 1.4403 -1.7560 -1.7894 25 6 2.1962 -2.0925 -2.8601 26 6 3.2735 -1.2026 -2.9229 27 7 3.1650 -0.3586 -1.9291 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 3.2145 -0.8517 3.7977 32 1 1.7399 -1.8586 3.8150 33 1 2.1544 0.9057 6.7314 34 1 2.6998 -0.7708 6.4866 35 1 3.4911 0.5597 5.6081 36 1 -0.4603 1.6690 5.3102 37 1 -2.4823 4.0690 6.4411 38 1 -0.1841 0.6626 2.7235 39 1 1.0704 1.7180 2.0042 40 1 0.5364 -2.2515 -1.4672 41 1 2.0021 -2.9045 -3.5450 42 1 4.0568 -1.2081 -3.6664 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082432178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:49 Heat of formation + Delta-G solvation = 65.100304 kcal Electronic energy + Delta-G solvation = -23702.202178 eV Core-core repulsion = 20298.736019 eV Total energy + Delta-G solvation = -3403.466159 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.33576 -39.92803 -37.71268 -34.74171 -34.17442 -32.52382 -30.83920 -30.10827 -29.51621 -27.72407 -26.50972 -24.79769 -23.91499 -21.90246 -21.14572 -20.76972 -20.02010 -19.23924 -17.44217 -17.15576 -17.09836 -15.99700 -15.61239 -14.98384 -14.50425 -14.34857 -13.96315 -13.71335 -13.57732 -13.45586 -13.23202 -13.07774 -12.90805 -12.73717 -12.40068 -12.36527 -11.98690 -11.75857 -11.67777 -11.18991 -11.07007 -10.78578 -10.70410 -10.68797 -10.34998 -10.09882 -10.05886 -9.82682 -9.37137 -9.10760 -8.59003 -8.51722 -7.19395 -5.94246 -3.25816 1.83313 2.29871 2.55592 2.87482 3.13902 3.34091 3.39864 3.40174 4.26787 4.39541 4.48852 4.66929 4.79754 4.89861 4.94533 5.00743 5.12655 5.31317 5.36846 5.44800 5.52381 5.53616 5.62169 5.69226 5.73543 5.78330 5.86341 5.92099 5.99063 6.11223 6.11946 6.22857 6.35077 6.37146 6.53427 6.63407 6.74612 6.94085 7.53865 7.57308 7.70572 8.11493 8.23042 9.35256 9.87341 10.22378 11.27269 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019243 B = 0.003873 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.727803 B = 7227.557792 C = 8159.598380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.148 3.852 3 H 0.127 0.873 4 C 0.515 3.485 5 O -0.536 6.536 6 N -0.607 5.607 7 C 0.118 3.882 8 C -0.115 4.115 9 H 0.085 0.915 10 C -0.134 4.134 11 C 0.177 3.823 12 H 0.070 0.930 13 N -0.708 5.708 14 C -0.253 4.253 15 H 0.072 0.928 16 C -0.005 4.005 17 N -0.928 5.928 18 Si 0.908 3.092 19 H -0.290 1.290 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.064 3.936 23 N -0.351 5.351 24 C 0.069 3.931 25 C -0.279 4.279 26 C 0.044 3.956 27 N -0.292 5.292 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.387 0.613 37 H 0.258 0.742 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.169 0.831 41 H 0.146 0.854 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.412 -9.703 -11.059 15.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.042 3.958 3 H 0.145 0.855 4 C 0.301 3.699 5 O -0.413 6.413 6 N -0.341 5.341 7 C -0.005 4.005 8 C -0.135 4.135 9 H 0.103 0.897 10 C -0.192 4.192 11 C 0.065 3.935 12 H 0.088 0.912 13 N -0.348 5.348 14 C -0.383 4.383 15 H 0.090 0.910 16 C -0.202 4.202 17 N -0.575 5.575 18 Si 0.738 3.262 19 H -0.216 1.216 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.062 4.062 23 N -0.133 5.133 24 C -0.077 4.077 25 C -0.308 4.308 26 C -0.143 4.143 27 N -0.113 5.113 28 H 0.120 0.880 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.222 0.778 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.186 0.814 41 H 0.163 0.837 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 5.260 -8.962 -10.470 14.752 hybrid contribution -0.745 0.121 -0.322 0.820 sum 4.516 -8.842 -10.792 14.664 Atomic orbital electron populations 1.22323 0.90398 1.04274 1.05686 1.21025 0.96326 0.97587 0.80908 0.85486 1.20302 0.81024 0.84918 0.83704 1.90732 1.38058 1.26408 1.86052 1.48446 1.50926 1.30074 1.04659 1.22014 0.99609 0.96859 0.82030 1.22533 0.99605 0.96774 0.94539 0.89691 1.21656 0.98197 1.01423 0.97903 1.21362 0.93033 0.90574 0.88574 0.91184 1.42290 1.28496 1.03925 1.60049 1.19197 1.08523 0.82640 1.27987 0.90977 1.24760 0.97457 0.98105 0.99876 1.69646 1.15474 1.34785 1.37617 0.86270 0.77092 0.85225 0.77587 1.21612 1.21093 1.21092 1.23736 0.94800 0.85574 1.02047 1.48234 1.19616 1.24267 1.21183 1.22411 0.99780 0.90739 0.94733 1.21428 0.99401 1.06506 1.03485 1.23838 0.99139 0.94078 0.97217 1.77356 1.02289 1.24305 1.07302 0.88018 0.90195 0.91146 0.91529 0.91872 0.91204 0.93185 0.92891 0.77803 0.93199 0.90604 0.91018 0.81412 0.83655 0.80152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 8.64 37.16 0.32 -1.42 16 2 C 0.15 1.95 3.08 -69.09 -0.21 1.74 16 3 H 0.13 1.62 7.85 -51.93 -0.41 1.22 16 4 C 0.51 8.12 7.28 -10.99 -0.08 8.04 16 5 O -0.54 -10.34 16.74 5.55 0.09 -10.25 16 6 N -0.61 -9.01 3.32 -170.53 -0.57 -9.58 16 7 C 0.12 1.69 6.47 -3.06 -0.02 1.67 16 8 C -0.11 -1.68 3.19 -88.78 -0.28 -1.96 16 9 H 0.08 1.27 8.00 -51.93 -0.42 0.86 16 10 C -0.13 -1.83 9.17 37.15 0.34 -1.49 16 11 C 0.18 3.06 3.16 -65.79 -0.21 2.86 16 12 H 0.07 1.27 8.00 -51.93 -0.42 0.85 16 13 N -0.71 -15.52 5.24 -51.36 -0.27 -15.79 16 14 C -0.25 -6.31 9.96 -15.06 -0.15 -6.46 16 15 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 16 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 17 N -0.93 -25.93 13.06 55.49 0.72 -25.21 16 18 Si 0.91 20.91 29.55 -169.99 -5.02 15.88 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C 0.06 0.97 4.83 -2.54 -0.01 0.95 16 23 N -0.35 -5.03 3.02 -56.00 -0.17 -5.20 16 24 C 0.07 0.86 10.57 -17.22 -0.18 0.67 16 25 C -0.28 -3.21 10.80 -40.01 -0.43 -3.65 16 26 C 0.04 0.55 12.02 -17.37 -0.21 0.34 16 27 N -0.29 -4.51 12.58 30.62 0.39 -4.12 16 28 H 0.10 1.08 5.00 -51.93 -0.26 0.82 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.67 7.16 -51.93 -0.37 0.30 16 31 H 0.07 0.96 7.78 -51.93 -0.40 0.56 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 36 H 0.39 9.11 7.76 -40.82 -0.32 8.79 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.08 1.16 7.07 -51.93 -0.37 0.79 16 39 H 0.07 1.04 7.36 -51.93 -0.38 0.65 16 40 H 0.17 1.59 7.26 -52.49 -0.38 1.21 16 41 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 42 H 0.18 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 345.65 15.07 5.21 5.21 Total: -1.00 -31.51 345.65 -7.06 -38.58 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -6.22 Total: 9.42 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -1.22 Total: 1.06 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.10 Total: -59.90 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.51 -7.06 -38.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082432178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.677 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds