Wall clock time and date at job start Tue Mar 31 2020 02:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30863 * 125.41452 * 2 1 4 4 C 1.33317 * 109.68222 * 180.26537 * 3 2 1 5 5 C 1.36662 * 107.78820 * 359.97438 * 4 3 2 6 6 C 1.46771 * 126.84513 * 179.97438 * 5 4 3 7 7 O 1.21680 * 119.99786 * 0.03585 * 6 5 4 8 8 N 1.34781 * 119.99701 * 180.02562 * 6 5 4 9 9 C 1.46495 * 119.99427 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.47583 * 35.00472 * 9 8 6 11 11 C 1.53000 * 109.47196 * 275.00227 * 9 8 6 12 12 C 1.52995 * 109.47288 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47385 * 59.99748 * 12 11 9 14 14 C 1.52998 * 109.47394 * 300.00121 * 13 12 11 15 15 C 1.53004 * 109.46724 * 155.00457 * 9 8 6 16 16 H 1.08998 * 109.47428 * 60.00120 * 15 9 8 17 17 N 1.46495 * 109.47039 * 299.99575 * 15 9 8 18 18 C 1.36944 * 119.99824 * 155.00181 * 17 15 9 19 19 H 1.07997 * 119.99701 * 359.97438 * 18 17 15 20 20 C 1.38807 * 119.99847 * 180.02562 * 18 17 15 21 21 N 1.31617 * 119.99990 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00016 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46766 * 90.00457 * 22 20 18 24 24 H 1.48500 * 109.47164 * 210.00030 * 22 20 18 25 25 H 1.48496 * 109.47205 * 330.00316 * 22 20 18 26 26 N 1.34495 * 125.42203 * 180.30246 * 2 1 3 27 27 H 0.96997 * 126.46658 * 359.71614 * 26 2 1 28 28 H 1.09000 * 109.47665 * 269.69781 * 1 2 3 29 29 H 1.09008 * 109.47400 * 29.69938 * 1 2 3 30 30 H 1.08996 * 109.46827 * 149.69612 * 1 2 3 31 31 H 1.07999 * 126.10826 * 179.97438 * 4 3 2 32 32 H 0.96997 * 119.99748 * 0.02562 * 8 6 5 33 33 H 1.08998 * 109.47218 * 300.00039 * 11 9 8 34 34 H 1.08998 * 109.47096 * 60.00105 * 11 9 8 35 35 H 1.09008 * 109.47558 * 180.02562 * 12 11 9 36 36 H 1.09007 * 109.47098 * 299.99686 * 12 11 9 37 37 H 1.08998 * 109.47183 * 60.00508 * 13 12 11 38 38 H 1.09001 * 109.47177 * 179.97438 * 13 12 11 39 39 H 1.08992 * 109.47646 * 179.97438 * 14 13 12 40 40 H 1.08998 * 109.47272 * 300.00333 * 14 13 12 41 41 H 0.96999 * 120.00212 * 334.99909 * 17 15 9 42 42 H 0.97006 * 120.00076 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0665 0.0000 4 6 3.5485 0.7050 -0.0058 5 6 3.5976 -0.6607 -0.0091 6 6 4.8029 -1.4981 -0.0162 7 8 5.9038 -0.9798 -0.0192 8 7 4.6903 -2.8412 -0.0192 9 6 5.8934 -3.6770 -0.0258 10 1 6.6743 -3.1945 0.5621 11 6 6.3788 -3.8610 -1.4650 12 6 7.6350 -4.7343 -1.4719 13 6 7.3096 -6.1005 -0.8648 14 6 6.8243 -5.9166 0.5744 15 6 5.5685 -5.0432 0.5815 16 1 4.7877 -5.5258 -0.0064 17 7 5.1038 -4.8671 1.9596 18 6 4.2931 -5.8092 2.5345 19 1 3.9961 -6.6818 1.9718 20 6 3.8524 -5.6420 3.8401 21 7 3.0728 -6.5473 4.3925 22 14 4.3656 -4.1323 4.8130 23 1 3.3740 -3.0471 4.6025 24 1 4.4285 -4.4719 6.2573 25 1 5.7023 -3.6776 4.3528 26 7 2.2865 -1.0960 -0.0058 27 1 1.9850 -2.0179 -0.0068 28 1 -0.3634 -0.0054 1.0276 29 1 -0.3634 0.8927 -0.5092 30 1 -0.3633 -0.8872 -0.5185 31 1 4.3977 1.3723 -0.0076 32 1 3.8127 -3.2543 -0.0171 33 1 5.5980 -4.3435 -2.0529 34 1 6.6102 -2.8876 -1.8976 35 1 7.9811 -4.8651 -2.4973 36 1 8.4160 -4.2522 -0.8839 37 1 6.5287 -6.5827 -1.4528 38 1 8.2045 -6.7229 -0.8702 39 1 6.5921 -6.8898 1.0068 40 1 7.6052 -5.4344 1.1624 41 1 5.3703 -4.0831 2.4648 42 1 2.7651 -6.4306 5.3050 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085152188.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:37 Heat of formation + Delta-G solvation = 14.137790 kcal Electronic energy + Delta-G solvation = -23938.652970 eV Core-core repulsion = 20532.976910 eV Total energy + Delta-G solvation = -3405.676060 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.26378 -39.72271 -37.87898 -34.28271 -34.09850 -32.68858 -31.99531 -31.44844 -29.58313 -28.38899 -27.23282 -23.64087 -23.40804 -21.84172 -21.11577 -20.77067 -20.33595 -19.81144 -18.55545 -17.63745 -16.14980 -15.97270 -15.73786 -15.11576 -14.62778 -14.41755 -14.14150 -13.98745 -13.64323 -13.58078 -13.39389 -13.23238 -12.85880 -12.71069 -12.64182 -12.38002 -12.31881 -11.46251 -11.10029 -11.02454 -10.94341 -10.71292 -10.48017 -10.42030 -10.25352 -10.20219 -9.98567 -9.76766 -9.70411 -9.05889 -8.92552 -8.49514 -7.40474 -5.89573 -3.25916 1.28272 2.75171 2.78133 3.23909 3.29214 3.35550 3.39093 3.42047 4.22597 4.48381 4.73826 4.82008 4.89965 5.00252 5.14727 5.18973 5.26867 5.33016 5.37900 5.46670 5.50296 5.59260 5.64938 5.68935 5.75317 5.77837 5.83424 5.97435 6.14961 6.27650 6.30912 6.34395 6.37943 6.48361 6.64011 6.73202 6.88757 7.09424 7.56304 7.84659 7.85756 8.25037 8.29261 9.07173 9.80203 9.99591 11.28152 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010520 B = 0.006467 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.917387 B = 4328.378688 C = 6171.458463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.235 3.765 3 N -0.498 5.498 4 C 0.066 3.934 5 C -0.085 4.085 6 C 0.594 3.406 7 O -0.533 6.533 8 N -0.709 5.709 9 C 0.138 3.862 10 H 0.087 0.913 11 C -0.123 4.123 12 C -0.114 4.114 13 C -0.120 4.120 14 C -0.133 4.133 15 C 0.178 3.822 16 H 0.059 0.941 17 N -0.747 5.747 18 C -0.246 4.246 19 H 0.091 0.909 20 C 0.010 3.990 21 N -0.931 5.931 22 Si 0.880 3.120 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.277 1.277 26 N -0.548 5.548 27 H 0.424 0.576 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.183 0.817 32 H 0.398 0.602 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.362 0.638 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.492 7.759 -13.134 15.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.029 4.029 3 N -0.219 5.219 4 C -0.088 4.088 5 C -0.201 4.201 6 C 0.380 3.620 7 O -0.410 6.410 8 N -0.358 5.358 9 C 0.033 3.967 10 H 0.105 0.895 11 C -0.162 4.162 12 C -0.152 4.152 13 C -0.158 4.158 14 C -0.174 4.174 15 C 0.068 3.932 16 H 0.077 0.923 17 N -0.389 5.389 18 C -0.376 4.376 19 H 0.109 0.891 20 C -0.186 4.186 21 N -0.578 5.578 22 Si 0.710 3.290 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.203 1.203 26 N -0.153 5.153 27 H 0.263 0.737 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.200 0.800 32 H 0.232 0.768 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.195 0.805 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.117 8.714 -13.055 15.696 hybrid contribution 0.088 -0.540 1.002 1.142 sum -0.028 8.173 -12.053 14.563 Atomic orbital electron populations 1.20308 0.84285 1.04428 1.04213 1.23448 0.95903 0.81598 1.01907 1.70179 1.02136 1.28258 1.21314 1.22609 0.94697 0.91259 1.00259 1.21255 0.83839 0.96060 1.18927 1.16855 0.86882 0.81743 0.76561 1.90822 1.25794 1.73348 1.51047 1.45875 1.10500 1.05240 1.74202 1.21417 0.86867 0.91920 0.96503 0.89507 1.21863 0.97948 1.00146 0.96284 1.21482 0.97281 0.95918 1.00552 1.21578 1.00655 0.96398 0.97149 1.22172 0.98579 1.01617 0.95004 1.20440 0.94882 0.91149 0.86730 0.92299 1.42811 1.59750 1.25813 1.10569 1.19029 1.20891 1.01280 0.96414 0.89111 1.24634 0.99470 0.97688 0.96855 1.69692 1.38423 1.35043 1.14620 0.86634 0.78516 0.83656 0.80179 1.21291 1.21628 1.20293 1.43280 1.06123 1.10453 1.55475 0.73680 0.89499 0.88772 0.90314 0.80025 0.76774 0.91878 0.91687 0.92154 0.91897 0.92197 0.92418 0.91035 0.92458 0.80523 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.51 36.00 0.38 -0.18 16 2 C 0.24 2.81 8.12 -155.61 -1.26 1.55 16 3 N -0.50 -7.19 11.20 -10.58 -0.12 -7.31 16 4 C 0.07 0.97 11.66 -17.48 -0.20 0.76 16 5 C -0.08 -1.24 7.08 -82.14 -0.58 -1.82 16 6 C 0.59 9.59 7.76 -12.81 -0.10 9.49 16 7 O -0.53 -10.02 16.57 5.21 0.09 -9.94 16 8 N -0.71 -10.56 4.91 -55.09 -0.27 -10.83 16 9 C 0.14 2.13 1.98 -67.93 -0.13 2.00 16 10 H 0.09 1.52 7.58 -51.93 -0.39 1.13 16 11 C -0.12 -1.60 5.49 -26.73 -0.15 -1.74 16 12 C -0.11 -1.36 5.92 -26.74 -0.16 -1.51 16 13 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 14 C -0.13 -2.14 5.50 -26.75 -0.15 -2.28 16 15 C 0.18 3.07 2.29 -67.95 -0.16 2.92 16 16 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 17 N -0.75 -16.28 4.76 -53.44 -0.25 -16.54 16 18 C -0.25 -6.43 10.41 -15.06 -0.16 -6.59 16 19 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 20 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 21 N -0.93 -28.01 13.97 55.49 0.78 -27.24 16 22 Si 0.88 21.88 27.74 -169.99 -4.71 17.16 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 26 N -0.55 -6.53 6.07 -7.02 -0.04 -6.57 16 27 H 0.42 4.03 8.32 -40.82 -0.34 3.69 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 0.64 8.14 -51.92 -0.42 0.21 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.18 2.43 8.06 -52.49 -0.42 2.01 16 32 H 0.40 5.41 7.85 -40.82 -0.32 5.09 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.36 8.24 5.66 -40.82 -0.23 8.01 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 345.54 15.07 5.21 5.21 Total: -1.00 -32.84 345.54 -8.62 -41.47 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -6.37 Total: 13.49 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -2.92 Total: 1.09 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: 0.09 Total: -68.48 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.16 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.84 -8.62 -41.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085152188.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.603 kcal (2) G-P(sol) polarization free energy of solvation -32.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds