Wall clock time and date at job start Tue Mar 31 2020 02:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30863 * 125.41452 * 2 1 4 4 C 1.33317 * 109.68222 * 180.26537 * 3 2 1 5 5 C 1.36662 * 107.78820 * 359.97438 * 4 3 2 6 6 C 1.46771 * 126.84513 * 179.97438 * 5 4 3 7 7 O 1.21680 * 119.99786 * 0.03585 * 6 5 4 8 8 N 1.34781 * 119.99701 * 180.02562 * 6 5 4 9 9 C 1.46495 * 119.99427 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.47583 * 35.00472 * 9 8 6 11 11 C 1.53000 * 109.47196 * 275.00227 * 9 8 6 12 12 C 1.52995 * 109.47288 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47385 * 59.99748 * 12 11 9 14 14 C 1.52998 * 109.47394 * 300.00121 * 13 12 11 15 15 C 1.53004 * 109.46724 * 155.00457 * 9 8 6 16 16 H 1.08998 * 109.47428 * 60.00120 * 15 9 8 17 17 N 1.46495 * 109.47039 * 299.99575 * 15 9 8 18 18 C 1.36944 * 119.99824 * 155.00181 * 17 15 9 19 19 H 1.07997 * 119.99701 * 359.97438 * 18 17 15 20 20 C 1.38807 * 119.99847 * 180.02562 * 18 17 15 21 21 N 1.31617 * 119.99990 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00016 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46766 * 90.00457 * 22 20 18 24 24 H 1.48500 * 109.47164 * 210.00030 * 22 20 18 25 25 H 1.48496 * 109.47205 * 330.00316 * 22 20 18 26 26 N 1.34495 * 125.42203 * 180.30246 * 2 1 3 27 27 H 0.96997 * 126.46658 * 359.71614 * 26 2 1 28 28 H 1.09000 * 109.47665 * 269.69781 * 1 2 3 29 29 H 1.09008 * 109.47400 * 29.69938 * 1 2 3 30 30 H 1.08996 * 109.46827 * 149.69612 * 1 2 3 31 31 H 1.07999 * 126.10826 * 179.97438 * 4 3 2 32 32 H 0.96997 * 119.99748 * 0.02562 * 8 6 5 33 33 H 1.08998 * 109.47218 * 300.00039 * 11 9 8 34 34 H 1.08998 * 109.47096 * 60.00105 * 11 9 8 35 35 H 1.09008 * 109.47558 * 180.02562 * 12 11 9 36 36 H 1.09007 * 109.47098 * 299.99686 * 12 11 9 37 37 H 1.08998 * 109.47183 * 60.00508 * 13 12 11 38 38 H 1.09001 * 109.47177 * 179.97438 * 13 12 11 39 39 H 1.08992 * 109.47646 * 179.97438 * 14 13 12 40 40 H 1.08998 * 109.47272 * 300.00333 * 14 13 12 41 41 H 0.96999 * 120.00212 * 334.99909 * 17 15 9 42 42 H 0.97006 * 120.00076 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0665 0.0000 4 6 3.5485 0.7050 -0.0058 5 6 3.5976 -0.6607 -0.0091 6 6 4.8029 -1.4981 -0.0162 7 8 5.9038 -0.9798 -0.0192 8 7 4.6903 -2.8412 -0.0192 9 6 5.8934 -3.6770 -0.0258 10 1 6.6743 -3.1945 0.5621 11 6 6.3788 -3.8610 -1.4650 12 6 7.6350 -4.7343 -1.4719 13 6 7.3096 -6.1005 -0.8648 14 6 6.8243 -5.9166 0.5744 15 6 5.5685 -5.0432 0.5815 16 1 4.7877 -5.5258 -0.0064 17 7 5.1038 -4.8671 1.9596 18 6 4.2931 -5.8092 2.5345 19 1 3.9961 -6.6818 1.9718 20 6 3.8524 -5.6420 3.8401 21 7 3.0728 -6.5473 4.3925 22 14 4.3656 -4.1323 4.8130 23 1 3.3740 -3.0471 4.6025 24 1 4.4285 -4.4719 6.2573 25 1 5.7023 -3.6776 4.3528 26 7 2.2865 -1.0960 -0.0058 27 1 1.9850 -2.0179 -0.0068 28 1 -0.3634 -0.0054 1.0276 29 1 -0.3634 0.8927 -0.5092 30 1 -0.3633 -0.8872 -0.5185 31 1 4.3977 1.3723 -0.0076 32 1 3.8127 -3.2543 -0.0171 33 1 5.5980 -4.3435 -2.0529 34 1 6.6102 -2.8876 -1.8976 35 1 7.9811 -4.8651 -2.4973 36 1 8.4160 -4.2522 -0.8839 37 1 6.5287 -6.5827 -1.4528 38 1 8.2045 -6.7229 -0.8702 39 1 6.5921 -6.8898 1.0068 40 1 7.6052 -5.4344 1.1624 41 1 5.3703 -4.0831 2.4648 42 1 2.7651 -6.4306 5.3050 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085152188.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:36 Heat of formation + Delta-G solvation = -8.978548 kcal Electronic energy + Delta-G solvation = -23939.655370 eV Core-core repulsion = 20532.976910 eV Total energy + Delta-G solvation = -3406.678460 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.29055 -40.99330 -39.18565 -35.97262 -35.38264 -33.74428 -33.35842 -32.85824 -30.77208 -29.83105 -28.21786 -25.40719 -24.57078 -22.99218 -22.54398 -21.81745 -21.51025 -20.98924 -19.98215 -19.27734 -17.45123 -17.12550 -16.82006 -16.73223 -16.10500 -15.70560 -15.36156 -15.05694 -15.04363 -14.79315 -14.70431 -14.48769 -14.29616 -13.78259 -13.71652 -13.45534 -13.24431 -13.11347 -13.00203 -12.44703 -12.21916 -12.12114 -11.87663 -11.79043 -11.60457 -11.49642 -11.28074 -11.24255 -11.09529 -10.90770 -10.19568 -9.55626 -9.34988 -8.05811 -5.37443 0.18766 1.29567 1.34114 1.38314 1.70549 1.79177 2.07357 2.23216 2.41342 3.25924 3.35701 3.41902 3.67922 3.78115 4.01085 4.09358 4.15463 4.21866 4.26706 4.38163 4.43198 4.53961 4.57670 4.64607 4.72400 4.82540 4.91643 4.96535 5.06838 5.08089 5.21430 5.25986 5.27484 5.40547 5.43744 5.48427 5.59879 5.76106 6.18369 6.19615 6.37830 6.82105 7.01372 7.03576 7.79645 7.97425 9.15256 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010520 B = 0.006467 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.917387 B = 4328.378688 C = 6171.458463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.246 3.754 3 N -0.526 5.526 4 C 0.057 3.943 5 C -0.103 4.103 6 C 0.595 3.405 7 O -0.565 6.565 8 N -0.704 5.704 9 C 0.145 3.855 10 H 0.066 0.934 11 C -0.115 4.115 12 C -0.110 4.110 13 C -0.111 4.111 14 C -0.129 4.129 15 C 0.176 3.824 16 H 0.064 0.936 17 N -0.749 5.749 18 C -0.215 4.215 19 H 0.069 0.931 20 C -0.050 4.050 21 N -0.977 5.977 22 Si 0.937 3.063 23 H -0.284 1.284 24 H -0.299 1.299 25 H -0.268 1.268 26 N -0.541 5.541 27 H 0.435 0.565 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.185 0.815 32 H 0.405 0.595 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.358 0.642 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.630 8.245 -14.843 16.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.018 4.018 3 N -0.247 5.247 4 C -0.097 4.097 5 C -0.220 4.220 6 C 0.382 3.618 7 O -0.445 6.445 8 N -0.353 5.353 9 C 0.040 3.960 10 H 0.084 0.916 11 C -0.154 4.154 12 C -0.148 4.148 13 C -0.149 4.149 14 C -0.170 4.170 15 C 0.068 3.932 16 H 0.081 0.919 17 N -0.391 5.391 18 C -0.346 4.346 19 H 0.087 0.913 20 C -0.242 4.242 21 N -0.628 5.628 22 Si 0.767 3.233 23 H -0.211 1.211 24 H -0.226 1.226 25 H -0.194 1.194 26 N -0.147 5.147 27 H 0.276 0.724 28 H 0.115 0.885 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.202 0.798 32 H 0.240 0.760 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.191 0.809 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.238 9.188 -14.817 17.436 hybrid contribution 0.098 -0.712 1.449 1.617 sum -0.140 8.476 -13.368 15.829 Atomic orbital electron populations 1.20553 0.81056 1.06253 1.05337 1.24306 0.97492 0.80884 0.99161 1.70208 1.02144 1.29530 1.22822 1.22807 0.95283 0.91598 0.99995 1.21013 0.84402 0.95851 1.20704 1.17004 0.86946 0.81928 0.75914 1.90797 1.27097 1.73899 1.52695 1.45826 1.10718 1.04976 1.73773 1.21305 0.86523 0.90280 0.97909 0.91585 1.21810 0.98946 1.00470 0.94183 1.21481 0.96485 0.94868 1.01992 1.21515 1.01579 0.97354 0.94432 1.22062 0.97583 0.99760 0.97594 1.20655 0.95472 0.92713 0.84362 0.91850 1.42850 1.59275 1.24724 1.12276 1.18997 1.19290 1.00583 0.95764 0.91285 1.25201 1.00634 1.00216 0.98169 1.69827 1.40849 1.37235 1.14863 0.85693 0.78483 0.80790 0.78322 1.21089 1.22573 1.19378 1.43247 1.05151 1.11202 1.55109 0.72372 0.88543 0.87748 0.87718 0.79766 0.75967 0.90339 0.92053 0.89498 0.92357 0.91175 0.90794 0.93249 0.93220 0.80919 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.51 71.24 0.75 -0.15 16 2 C 0.25 5.39 8.12 138.20 1.12 6.51 16 3 N -0.53 -14.61 11.20 -187.40 -2.10 -16.71 16 4 C 0.06 1.67 11.66 84.10 0.98 2.65 16 5 C -0.10 -2.94 7.08 40.01 0.28 -2.66 16 6 C 0.59 18.87 7.76 86.47 0.67 19.54 16 7 O -0.57 -21.23 16.57 -4.28 -0.07 -21.30 16 8 N -0.70 -20.19 4.91 -446.42 -2.19 -22.38 16 9 C 0.14 4.29 1.98 44.99 0.09 4.38 16 10 H 0.07 2.28 7.58 -2.39 -0.02 2.26 16 11 C -0.12 -2.70 5.49 30.59 0.17 -2.54 16 12 C -0.11 -2.28 5.92 30.59 0.18 -2.10 16 13 C -0.11 -2.48 5.92 30.59 0.18 -2.30 16 14 C -0.13 -4.01 5.50 30.58 0.17 -3.84 16 15 C 0.18 5.88 2.29 44.98 0.10 5.99 16 16 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 17 N -0.75 -32.18 4.76 -323.00 -1.54 -33.72 16 18 C -0.22 -11.25 10.41 84.03 0.87 -10.37 16 19 H 0.07 3.89 8.06 -2.91 -0.02 3.87 16 20 C -0.05 -2.81 5.50 84.86 0.47 -2.34 16 21 N -0.98 -59.81 13.97 21.65 0.30 -59.50 16 22 Si 0.94 45.52 27.74 68.60 1.90 47.42 16 23 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.30 -14.86 7.11 99.48 0.71 -14.16 16 25 H -0.27 -12.46 6.52 99.48 0.65 -11.81 16 26 N -0.54 -12.00 6.07 -176.11 -1.07 -13.07 16 27 H 0.43 7.40 8.32 -92.71 -0.77 6.63 16 28 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.19 5.00 8.06 -2.91 -0.02 4.97 16 32 H 0.41 10.42 7.85 -92.71 -0.73 9.70 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.06 1.28 8.14 -2.38 -0.02 1.27 16 37 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.36 16.01 5.66 -92.71 -0.52 15.48 16 42 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 Total: -1.00 -71.36 345.54 0.25 -71.11 By element: Atomic # 1 Polarization: 36.42 SS G_CDS: -1.03 Total: 35.39 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 6.04 Total: 12.76 kcal Atomic # 7 Polarization: -138.79 SS G_CDS: -6.59 Total: -145.38 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.07 Total: -21.30 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.90 Total: 47.42 kcal Total: -71.36 0.25 -71.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085152188.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.131 kcal (2) G-P(sol) polarization free energy of solvation -71.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds