Wall clock time and date at job start Tue Mar 31 2020 03:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47227 * 2 1 4 4 C 1.34261 * 125.75378 * 125.00418 * 3 2 1 5 5 C 1.38045 * 107.41460 * 179.97438 * 4 3 2 6 6 C 1.47429 * 126.41297 * 179.97438 * 5 4 3 7 7 O 1.21603 * 119.99900 * 346.02689 * 6 5 4 8 8 N 1.34773 * 120.00180 * 166.02530 * 6 5 4 9 9 C 1.46496 * 119.99645 * 1.64825 * 8 6 5 10 10 C 1.46496 * 120.00307 * 181.65630 * 8 6 5 11 11 C 1.53007 * 109.47215 * 84.77980 * 10 8 6 12 12 H 1.09006 * 112.96264 * 294.36155 * 11 10 8 13 13 C 1.53941 * 113.76909 * 66.03706 * 11 10 8 14 14 C 1.53952 * 86.28735 * 137.90921 * 13 11 10 15 15 N 1.47576 * 113.76773 * 162.68803 * 11 10 8 16 16 C 1.36936 * 134.50018 * 41.06189 * 15 11 10 17 17 H 1.07999 * 119.99292 * 4.93331 * 16 15 11 18 18 C 1.38811 * 120.00189 * 184.93021 * 16 15 11 19 19 N 1.31612 * 120.00137 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99691 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46972 * 60.00333 * 20 18 16 22 22 H 1.48497 * 109.46533 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47166 * 300.00440 * 20 18 16 24 24 C 1.41285 * 107.17121 * 0.02562 * 5 4 3 25 25 N 1.30443 * 108.02684 * 359.97438 * 24 5 4 26 26 H 1.09001 * 109.47666 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46778 * 299.99940 * 1 2 3 28 28 H 1.08999 * 109.47662 * 59.99227 * 1 2 3 29 29 H 1.09004 * 109.46964 * 240.00540 * 2 1 3 30 30 H 1.08993 * 109.47370 * 120.00111 * 2 1 3 31 31 H 1.07995 * 126.28747 * 359.97438 * 4 3 2 32 32 H 1.09007 * 109.46904 * 84.09679 * 9 8 6 33 33 H 1.09001 * 109.47420 * 204.08878 * 9 8 6 34 34 H 1.09000 * 109.47933 * 324.09783 * 9 8 6 35 35 H 1.08996 * 109.47483 * 204.78299 * 10 8 6 36 36 H 1.09002 * 109.46904 * 324.78085 * 10 8 6 37 37 H 1.08999 * 113.74555 * 252.25214 * 13 11 10 38 38 H 1.09001 * 113.74295 * 23.46135 * 13 11 10 39 39 H 1.09000 * 113.76927 * 90.69709 * 14 13 11 40 40 H 1.08996 * 113.77142 * 221.98083 * 14 13 11 41 41 H 0.97004 * 119.99985 * 180.02562 * 19 18 16 42 42 H 1.08001 * 125.98618 * 179.72926 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8691 1.9125 0.8925 5 6 3.0715 3.2308 0.5364 6 6 3.9327 4.2033 1.2335 7 8 4.3457 3.9584 2.3507 8 7 4.2624 5.3637 0.6325 9 6 3.7357 5.6746 -0.6986 10 6 5.1476 6.3140 1.3103 11 6 6.6052 5.9288 1.0491 12 1 6.8789 4.9726 1.4952 13 6 7.0301 6.0707 -0.4237 14 6 8.3394 6.6742 0.1164 15 7 7.5664 7.0129 1.3299 16 6 7.6905 7.9538 2.3170 17 1 7.0164 7.9432 3.1608 18 6 8.6826 8.9210 2.2332 19 7 9.5037 8.9342 1.2047 20 14 8.8522 10.2041 3.5804 21 1 9.1178 9.5291 4.8762 22 1 9.9788 11.1157 3.2565 23 1 7.5946 10.9875 3.6790 24 6 2.2977 3.4738 -0.6205 25 7 1.6769 2.3692 -0.9303 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 3.3134 1.4022 1.7342 32 1 2.7414 6.1112 -0.6031 33 1 4.3978 6.3842 -1.1949 34 1 3.6756 4.7600 -1.2885 35 1 4.9632 7.3182 0.9286 36 1 4.9524 6.2913 2.3824 37 1 7.1644 5.1178 -0.9355 38 1 6.4211 6.7752 -0.9902 39 1 9.1242 5.9377 0.2889 40 1 8.6867 7.5425 -0.4435 41 1 10.1972 9.6099 1.1464 42 1 2.2290 4.4111 -1.1526 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085521288.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:24 Heat of formation + Delta-G solvation = 96.021889 kcal Electronic energy + Delta-G solvation = -23342.082006 eV Core-core repulsion = 19939.956707 eV Total energy + Delta-G solvation = -3402.125299 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.43749 -40.63040 -39.29850 -36.50781 -35.36914 -34.19834 -31.54979 -31.31425 -29.83141 -29.37264 -27.56877 -25.39032 -25.10367 -24.20702 -22.68177 -21.68861 -20.92618 -20.29711 -18.72065 -18.19040 -17.24381 -17.14689 -16.92243 -16.57874 -16.19632 -15.85328 -15.46845 -15.27400 -14.87740 -14.57621 -14.14855 -14.08561 -13.80843 -13.76360 -13.35141 -13.31314 -13.00432 -12.93610 -12.71537 -12.54733 -12.43831 -12.28004 -12.15197 -11.85995 -11.73653 -11.54960 -11.30457 -10.81698 -10.80262 -10.52738 -9.77195 -9.47841 -8.86944 -7.86700 -5.21351 0.56627 1.21173 1.43928 1.45634 1.49103 1.55065 2.05686 2.47447 2.51571 3.32409 3.41846 3.53806 3.81498 3.86526 3.98275 4.05578 4.10854 4.25897 4.34745 4.35778 4.37855 4.45614 4.53297 4.68443 4.71236 4.81616 4.83829 4.89464 4.93041 5.00985 5.05436 5.10161 5.22965 5.27204 5.43890 5.54854 5.59796 5.77840 5.91280 5.98628 6.51158 6.59504 6.95320 7.29596 7.63850 8.60608 9.29015 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037186 B = 0.003095 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.798831 B = 9045.969170 C = 9267.646491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.115 3.885 3 N -0.357 5.357 4 C 0.128 3.872 5 C -0.311 4.311 6 C 0.585 3.415 7 O -0.599 6.599 8 N -0.599 5.599 9 C 0.055 3.945 10 C 0.138 3.862 11 C 0.132 3.868 12 H 0.025 0.975 13 C -0.121 4.121 14 C 0.146 3.854 15 N -0.629 5.629 16 C -0.232 4.232 17 H 0.076 0.924 18 C -0.065 4.065 19 N -0.952 5.952 20 Si 0.976 3.024 21 H -0.284 1.284 22 H -0.292 1.292 23 H -0.273 1.273 24 C 0.070 3.930 25 N -0.317 5.317 26 H 0.101 0.899 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.125 0.875 31 H 0.201 0.799 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.008 0.992 40 H 0.053 0.947 41 H 0.248 0.752 42 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.386 -17.135 -8.016 27.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.004 4.004 3 N -0.135 5.135 4 C -0.025 4.025 5 C -0.326 4.326 6 C 0.376 3.624 7 O -0.482 6.482 8 N -0.330 5.330 9 C -0.086 4.086 10 C 0.014 3.986 11 C 0.025 3.975 12 H 0.043 0.957 13 C -0.159 4.159 14 C 0.021 3.979 15 N -0.356 5.356 16 C -0.360 4.360 17 H 0.094 0.906 18 C -0.258 4.258 19 N -0.601 5.601 20 Si 0.804 3.196 21 H -0.210 1.210 22 H -0.218 1.218 23 H -0.198 1.198 24 C -0.117 4.117 25 N -0.137 5.137 26 H 0.120 0.880 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.143 0.857 31 H 0.218 0.782 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.026 0.974 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -19.932 -17.708 -8.146 27.879 hybrid contribution 1.420 1.194 1.685 2.506 sum -18.512 -16.514 -6.461 25.635 Atomic orbital electron populations 1.22020 0.93102 1.04258 1.02402 1.22241 0.96673 0.75278 1.06220 1.48985 1.33459 1.11533 1.19554 1.23241 0.91295 0.93454 0.94527 1.20134 1.12388 0.95678 1.04377 1.17754 0.79125 0.81117 0.84391 1.90742 1.58028 1.77911 1.21469 1.47559 1.47549 1.18259 1.19632 1.22727 1.00439 1.03401 0.82062 1.21307 0.88498 0.92048 0.96789 1.22574 0.90367 0.90220 0.94374 0.95723 1.23490 0.97126 1.00505 0.94733 1.22301 0.92982 0.95884 0.86742 1.46465 1.28558 1.32988 1.27592 1.19309 1.13094 1.03834 0.99762 0.90628 1.25577 0.98290 1.01285 1.00611 1.69994 1.21286 1.37080 1.31701 0.85198 0.77295 0.78701 0.78419 1.21002 1.21787 1.19847 1.25308 0.93136 0.98790 0.94434 1.77114 1.24293 0.97687 1.14589 0.88018 0.93015 0.92517 0.88053 0.85658 0.78239 0.89885 0.89763 0.88301 0.89371 0.93458 0.90494 0.88845 0.97394 0.92903 0.94264 0.75519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 10.09 71.98 0.73 -0.61 16 2 C 0.11 1.01 7.21 86.38 0.62 1.63 16 3 N -0.36 -6.21 3.65 -346.30 -1.26 -7.47 16 4 C 0.13 2.63 11.28 84.28 0.95 3.58 16 5 C -0.31 -7.71 5.90 -20.15 -0.12 -7.83 16 6 C 0.59 19.02 7.63 86.66 0.66 19.68 16 7 O -0.60 -24.89 16.58 -4.04 -0.07 -24.95 16 8 N -0.60 -17.74 2.79 -850.67 -2.37 -20.11 16 9 C 0.05 1.03 8.47 127.77 1.08 2.11 16 10 C 0.14 5.21 5.25 86.38 0.45 5.66 16 11 C 0.13 5.72 4.53 45.09 0.20 5.92 16 12 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 13 C -0.12 -4.50 7.31 31.25 0.23 -4.27 16 14 C 0.15 7.21 7.65 86.44 0.66 7.87 16 15 N -0.63 -33.67 3.58 -690.78 -2.47 -36.14 16 16 C -0.23 -13.50 10.51 84.03 0.88 -12.61 16 17 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 18 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 19 N -0.95 -58.55 11.32 21.65 0.25 -58.30 16 20 Si 0.98 47.12 29.55 68.60 2.03 49.14 16 21 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 22 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 23 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 24 C 0.07 1.38 9.80 85.65 0.84 2.22 16 25 N -0.32 -6.52 12.33 -56.28 -0.69 -7.22 16 26 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.13 0.45 8.06 -2.39 -0.02 0.43 16 31 H 0.20 3.36 8.06 -2.91 -0.02 3.33 16 32 H 0.08 1.15 7.57 -2.38 -0.02 1.14 16 33 H 0.08 1.54 6.66 -2.39 -0.02 1.52 16 34 H 0.10 1.51 4.91 -2.39 -0.01 1.50 16 35 H 0.09 3.23 8.03 -2.39 -0.02 3.21 16 36 H 0.05 2.03 7.56 -2.39 -0.02 2.02 16 37 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.09 3.12 6.96 -2.39 -0.02 3.10 16 39 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.05 2.86 6.97 -2.39 -0.02 2.84 16 41 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 42 H 0.23 3.07 4.69 -2.91 -0.01 3.06 16 Total: -1.00 -80.36 344.84 4.08 -76.28 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 1.02 Total: 8.75 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: 7.66 Total: 20.03 kcal Atomic # 7 Polarization: -122.69 SS G_CDS: -6.56 Total: -129.24 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.07 Total: -24.95 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.14 kcal Total: -80.36 4.08 -76.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085521288.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.303 kcal (2) G-P(sol) polarization free energy of solvation -80.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds