Wall clock time and date at job start Tue Mar 31 2020 02:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30443 * 125.98704 * 2 1 4 4 N 1.39940 * 108.89776 * 180.02562 * 3 2 1 5 5 C 1.46499 * 125.75594 * 179.97438 * 4 3 2 6 6 C 1.34258 * 108.48896 * 0.22995 * 4 3 2 7 7 C 1.38046 * 107.41871 * 359.63929 * 6 4 3 8 8 C 1.47429 * 126.41510 * 180.14131 * 7 6 4 9 9 O 1.21607 * 119.99887 * 180.26416 * 8 7 6 10 10 N 1.34771 * 119.99951 * 0.25683 * 8 7 6 11 11 C 1.46505 * 119.99892 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47347 * 179.97438 * 11 10 8 13 13 H 1.09000 * 112.84842 * 43.80392 * 12 11 10 14 14 C 1.53778 * 113.61819 * 174.99799 * 12 11 10 15 15 C 1.53776 * 87.08289 * 139.98305 * 14 12 11 16 16 H 1.09002 * 113.61509 * 89.11492 * 15 14 12 17 17 N 1.46503 * 113.61376 * 220.02354 * 15 14 12 18 18 C 1.36944 * 119.99614 * 204.99738 * 17 15 14 19 19 H 1.07998 * 119.99882 * 0.02562 * 18 17 15 20 20 C 1.38807 * 119.99704 * 179.97438 * 18 17 15 21 21 N 1.31621 * 120.00171 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00009 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47170 * 90.00141 * 22 20 18 24 24 H 1.48500 * 109.47264 * 210.00215 * 22 20 18 25 25 H 1.48506 * 109.47247 * 330.00231 * 22 20 18 26 26 C 1.53779 * 113.61612 * 272.49892 * 12 11 10 27 27 H 1.09000 * 109.47364 * 89.97559 * 1 2 3 28 28 H 1.09000 * 109.47125 * 209.97212 * 1 2 3 29 29 H 1.09003 * 109.47001 * 329.97089 * 1 2 3 30 30 H 1.09002 * 109.47391 * 90.02192 * 5 4 3 31 31 H 1.09001 * 109.46813 * 330.02248 * 5 4 3 32 32 H 1.09004 * 109.47041 * 210.02375 * 5 4 3 33 33 H 1.08000 * 126.29357 * 179.75167 * 6 4 3 34 34 H 0.96996 * 120.00363 * 0.02562 * 10 8 7 35 35 H 1.09004 * 109.47114 * 300.00272 * 11 10 8 36 36 H 1.09003 * 109.47200 * 59.99877 * 11 10 8 37 37 H 1.08999 * 113.61463 * 254.53647 * 14 12 11 38 38 H 1.09003 * 113.61123 * 25.34793 * 14 12 11 39 39 H 0.96995 * 120.00420 * 24.99603 * 17 15 14 40 40 H 0.96998 * 120.00089 * 179.97438 * 21 20 18 41 41 H 1.09003 * 113.61413 * 334.56596 * 26 12 11 42 42 H 1.09006 * 113.61304 * 105.46665 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6443 -0.0006 5 6 4.7787 1.5291 -0.0013 6 6 3.6439 -0.6979 -0.0061 7 6 2.3373 -1.1432 -0.0007 8 6 1.8916 -2.5486 -0.0008 9 8 0.7039 -2.8097 -0.0006 10 7 2.8004 -3.5437 -0.0015 11 6 2.3575 -4.9402 -0.0022 12 6 3.5783 -5.8625 -0.0035 13 1 4.3533 -5.5396 0.6917 14 6 3.2239 -7.3539 0.1185 15 6 4.3323 -7.6210 -0.9133 16 1 5.3145 -7.7792 -0.4680 17 7 3.9814 -8.6460 -1.8995 18 6 4.9685 -9.3533 -2.5326 19 1 6.0055 -9.1558 -2.3045 20 6 4.6360 -10.3249 -3.4665 21 7 3.3722 -10.5660 -3.7440 22 14 5.9823 -11.2903 -4.3296 23 1 6.2997 -12.5090 -3.5427 24 1 5.5189 -11.6828 -5.6848 25 1 7.1986 -10.4465 -4.4475 26 6 4.1062 -6.1838 -1.4116 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5143 30 1 5.0691 1.7484 1.0262 31 1 4.5303 2.4579 -0.5148 32 1 5.6055 1.0392 -0.5159 33 1 4.5297 -1.3157 -0.0116 34 1 3.7478 -3.3354 -0.0014 35 1 1.7579 -5.1317 0.8877 36 1 1.7578 -5.1307 -0.8923 37 1 3.4330 -7.7733 1.1026 38 1 2.2236 -7.5957 -0.2407 39 1 3.0501 -8.8237 -2.1040 40 1 3.1399 -11.2446 -4.3969 41 1 3.3477 -6.1060 -2.1906 42 1 5.0278 -5.6586 -1.6628 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086046322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:38 Heat of formation + Delta-G solvation = 65.230962 kcal Electronic energy + Delta-G solvation = -22375.177618 eV Core-core repulsion = 18971.717125 eV Total energy + Delta-G solvation = -3403.460494 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.66836 -39.39395 -38.27751 -34.74184 -34.17218 -33.29467 -31.11508 -30.11721 -29.63141 -27.43158 -25.91755 -25.07692 -23.89189 -22.64249 -21.14802 -20.51726 -19.90453 -19.03972 -17.84765 -17.03766 -16.19086 -16.10106 -15.84424 -15.14715 -14.83162 -14.65337 -14.40485 -13.94774 -13.76699 -13.53343 -13.39379 -13.14419 -12.88846 -12.84142 -12.41890 -12.20022 -11.88255 -11.79339 -11.37828 -11.22851 -11.11803 -10.84575 -10.51996 -10.21929 -10.14056 -9.82047 -9.78802 -9.64010 -9.46768 -9.08743 -8.87577 -8.77200 -6.96268 -5.78422 -3.07308 1.23018 1.96995 2.01884 3.27696 3.42081 3.42171 3.47108 3.49136 4.02650 4.26198 4.58008 4.59275 4.66270 4.89597 4.92791 4.98441 5.01921 5.16757 5.20209 5.27676 5.46977 5.53047 5.56609 5.72207 5.82425 5.85792 5.88937 5.97514 6.09890 6.28085 6.32150 6.34264 6.37758 6.44688 6.52883 6.60686 6.84082 7.12219 7.29099 7.59081 7.68405 8.31693 8.40230 9.51160 10.09820 10.43892 11.43991 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025512 B = 0.002544 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.244968 B =11003.755072 C =11501.565225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.132 3.868 3 N -0.305 5.305 4 N -0.363 5.363 5 C 0.097 3.903 6 C 0.099 3.901 7 C -0.286 4.286 8 C 0.591 3.409 9 O -0.543 6.543 10 N -0.724 5.724 11 C 0.134 3.866 12 C -0.127 4.127 13 H 0.087 0.913 14 C -0.142 4.142 15 C 0.166 3.834 16 H 0.075 0.925 17 N -0.713 5.713 18 C -0.244 4.244 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.161 4.161 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.183 0.817 34 H 0.395 0.605 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.078 0.922 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.255 23.647 10.392 25.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.035 4.035 3 N -0.127 5.127 4 N -0.141 5.141 5 C -0.044 4.044 6 C -0.052 4.052 7 C -0.301 4.301 8 C 0.378 3.622 9 O -0.421 6.421 10 N -0.375 5.375 11 C 0.011 3.989 12 C -0.146 4.146 13 H 0.105 0.895 14 C -0.182 4.182 15 C 0.053 3.947 16 H 0.093 0.907 17 N -0.351 5.351 18 C -0.375 4.375 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.202 4.202 27 H 0.099 0.901 28 H 0.115 0.885 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.200 0.800 34 H 0.229 0.771 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.732 24.703 10.296 26.818 hybrid contribution 1.169 -1.305 -0.635 1.863 sum 2.901 23.398 9.661 25.480 Atomic orbital electron populations 1.20356 0.85576 1.04029 1.03662 1.22498 0.97330 0.88720 0.94942 1.77198 0.85928 1.22671 1.26899 1.48295 1.06190 1.04762 1.54835 1.21997 0.83771 0.94779 1.03875 1.23104 0.99004 0.85293 0.97834 1.20325 0.92065 0.94697 1.23032 1.17231 0.85679 0.83434 0.75861 1.90745 1.16321 1.84267 1.50812 1.45872 1.09296 1.06499 1.75821 1.21423 0.96711 0.78556 1.02202 1.22637 0.96837 0.95402 0.99763 0.89484 1.23445 1.01313 0.93100 1.00346 1.21520 0.95739 0.87718 0.89678 0.90734 1.42419 1.06716 1.40835 1.45119 1.19296 0.88608 1.13139 1.16480 0.91133 1.24771 0.96159 0.99842 1.00182 1.69660 1.15197 1.35964 1.37167 0.86195 0.80938 0.80114 0.78954 1.21692 1.21763 1.20773 1.23953 1.00338 1.01207 0.94690 0.90141 0.88484 0.91152 0.90215 0.88879 0.88967 0.79982 0.77138 0.91712 0.91156 0.92036 0.90059 0.78036 0.93432 0.90302 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 9.92 36.01 0.36 -0.47 16 2 C 0.13 1.62 7.26 -82.02 -0.60 1.02 16 3 N -0.30 -3.58 12.50 33.89 0.42 -3.16 16 4 N -0.36 -3.16 3.98 -67.60 -0.27 -3.42 16 5 C 0.10 0.38 11.44 59.85 0.68 1.07 16 6 C 0.10 0.83 10.99 -16.56 -0.18 0.65 16 7 C -0.29 -3.34 6.13 -105.07 -0.64 -3.98 16 8 C 0.59 7.95 7.81 -12.52 -0.10 7.85 16 9 O -0.54 -9.11 14.92 5.27 0.08 -9.03 16 10 N -0.72 -8.24 5.54 -61.38 -0.34 -8.58 16 11 C 0.13 1.75 5.51 -4.04 -0.02 1.73 16 12 C -0.13 -1.65 3.75 -89.81 -0.34 -1.98 16 13 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 14 C -0.14 -2.23 7.39 -25.92 -0.19 -2.42 16 15 C 0.17 3.15 4.48 -67.12 -0.30 2.84 16 16 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 17 N -0.71 -17.67 5.40 -52.64 -0.28 -17.96 16 18 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 22 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C -0.16 -2.59 7.43 -25.92 -0.19 -2.79 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.10 1.14 6.55 -51.93 -0.34 0.80 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.18 0.77 7.46 -52.49 -0.39 0.38 16 34 H 0.40 3.33 7.40 -40.82 -0.30 3.03 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.06 7.84 -51.93 -0.41 0.65 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 39 H 0.39 10.21 7.92 -40.82 -0.32 9.89 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.08 1.42 7.90 -51.93 -0.41 1.01 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 354.53 15.07 5.34 5.34 Total: -1.00 -35.05 354.53 -7.48 -42.53 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.36 Total: 8.33 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -1.77 Total: -3.82 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: 0.25 Total: -60.54 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.08 Total: -9.03 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.05 -7.48 -42.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086046322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.759 kcal (2) G-P(sol) polarization free energy of solvation -35.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds