Wall clock time and date at job start Tue Mar 31 2020 02:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30443 * 125.98704 * 2 1 4 4 N 1.39940 * 108.89776 * 180.02562 * 3 2 1 5 5 C 1.46499 * 125.75594 * 179.97438 * 4 3 2 6 6 C 1.34258 * 108.48896 * 0.22995 * 4 3 2 7 7 C 1.38046 * 107.41871 * 359.63929 * 6 4 3 8 8 C 1.47429 * 126.41510 * 180.14131 * 7 6 4 9 9 O 1.21607 * 119.99887 * 180.26416 * 8 7 6 10 10 N 1.34771 * 119.99951 * 0.25683 * 8 7 6 11 11 C 1.46505 * 119.99892 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47347 * 179.97438 * 11 10 8 13 13 H 1.09000 * 112.84842 * 43.80392 * 12 11 10 14 14 C 1.53778 * 113.61819 * 174.99799 * 12 11 10 15 15 C 1.53776 * 87.08289 * 139.98305 * 14 12 11 16 16 H 1.09002 * 113.61509 * 89.11492 * 15 14 12 17 17 N 1.46503 * 113.61376 * 220.02354 * 15 14 12 18 18 C 1.36944 * 119.99614 * 204.99738 * 17 15 14 19 19 H 1.07998 * 119.99882 * 0.02562 * 18 17 15 20 20 C 1.38807 * 119.99704 * 179.97438 * 18 17 15 21 21 N 1.31621 * 120.00171 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00009 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47170 * 90.00141 * 22 20 18 24 24 H 1.48500 * 109.47264 * 210.00215 * 22 20 18 25 25 H 1.48506 * 109.47247 * 330.00231 * 22 20 18 26 26 C 1.53779 * 113.61612 * 272.49892 * 12 11 10 27 27 H 1.09000 * 109.47364 * 89.97559 * 1 2 3 28 28 H 1.09000 * 109.47125 * 209.97212 * 1 2 3 29 29 H 1.09003 * 109.47001 * 329.97089 * 1 2 3 30 30 H 1.09002 * 109.47391 * 90.02192 * 5 4 3 31 31 H 1.09001 * 109.46813 * 330.02248 * 5 4 3 32 32 H 1.09004 * 109.47041 * 210.02375 * 5 4 3 33 33 H 1.08000 * 126.29357 * 179.75167 * 6 4 3 34 34 H 0.96996 * 120.00363 * 0.02562 * 10 8 7 35 35 H 1.09004 * 109.47114 * 300.00272 * 11 10 8 36 36 H 1.09003 * 109.47200 * 59.99877 * 11 10 8 37 37 H 1.08999 * 113.61463 * 254.53647 * 14 12 11 38 38 H 1.09003 * 113.61123 * 25.34793 * 14 12 11 39 39 H 0.96995 * 120.00420 * 24.99603 * 17 15 14 40 40 H 0.96998 * 120.00089 * 179.97438 * 21 20 18 41 41 H 1.09003 * 113.61413 * 334.56596 * 26 12 11 42 42 H 1.09006 * 113.61304 * 105.46665 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6443 -0.0006 5 6 4.7787 1.5291 -0.0013 6 6 3.6439 -0.6979 -0.0061 7 6 2.3373 -1.1432 -0.0007 8 6 1.8916 -2.5486 -0.0008 9 8 0.7039 -2.8097 -0.0006 10 7 2.8004 -3.5437 -0.0015 11 6 2.3575 -4.9402 -0.0022 12 6 3.5783 -5.8625 -0.0035 13 1 4.3533 -5.5396 0.6917 14 6 3.2239 -7.3539 0.1185 15 6 4.3323 -7.6210 -0.9133 16 1 5.3145 -7.7792 -0.4680 17 7 3.9814 -8.6460 -1.8995 18 6 4.9685 -9.3533 -2.5326 19 1 6.0055 -9.1558 -2.3045 20 6 4.6360 -10.3249 -3.4665 21 7 3.3722 -10.5660 -3.7440 22 14 5.9823 -11.2903 -4.3296 23 1 6.2997 -12.5090 -3.5427 24 1 5.5189 -11.6828 -5.6848 25 1 7.1986 -10.4465 -4.4475 26 6 4.1062 -6.1838 -1.4116 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5143 30 1 5.0691 1.7484 1.0262 31 1 4.5303 2.4579 -0.5148 32 1 5.6055 1.0392 -0.5159 33 1 4.5297 -1.3157 -0.0116 34 1 3.7478 -3.3354 -0.0014 35 1 1.7579 -5.1317 0.8877 36 1 1.7578 -5.1307 -0.8923 37 1 3.4330 -7.7733 1.1026 38 1 2.2236 -7.5957 -0.2407 39 1 3.0501 -8.8237 -2.1040 40 1 3.1399 -11.2446 -4.3969 41 1 3.3477 -6.1060 -2.1906 42 1 5.0278 -5.6586 -1.6628 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086046322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:38 Heat of formation + Delta-G solvation = 39.839563 kcal Electronic energy + Delta-G solvation = -22376.278672 eV Core-core repulsion = 18971.717125 eV Total energy + Delta-G solvation = -3404.561547 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.41251 -40.51150 -39.52339 -36.02686 -35.06593 -34.81676 -32.36141 -31.55652 -30.32780 -28.60487 -26.70210 -26.40982 -25.70165 -23.50471 -22.44045 -21.41027 -20.84391 -20.33314 -19.05629 -18.60694 -17.06787 -16.98398 -16.80223 -16.42860 -16.18593 -15.78857 -15.48482 -15.25131 -14.94146 -14.64635 -14.44762 -14.15661 -14.03568 -13.39568 -13.34714 -13.19117 -13.03336 -12.98771 -12.95416 -12.86695 -12.62607 -12.16741 -12.04858 -11.90468 -11.53991 -11.51504 -11.06354 -10.83097 -10.73083 -10.37507 -10.08527 -9.58162 -8.94996 -7.92511 -5.20694 0.53832 1.09190 1.47366 1.48498 1.50305 1.58553 2.31699 2.47749 2.58601 3.38328 3.40130 3.71795 3.77074 3.81464 3.95142 4.07299 4.26423 4.30275 4.40350 4.41334 4.44637 4.46761 4.51616 4.62585 4.72541 4.74214 4.85227 4.97283 4.98454 5.02723 5.04570 5.11457 5.27443 5.41957 5.48147 5.52115 5.57864 5.78867 5.91331 6.29998 6.51402 6.72801 7.35216 7.37167 8.14534 8.35683 9.31232 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025512 B = 0.002544 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.244968 B =11003.755072 C =11501.565225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.112 3.888 3 N -0.332 5.332 4 N -0.359 5.359 5 C 0.085 3.915 6 C 0.125 3.875 7 C -0.321 4.321 8 C 0.589 3.411 9 O -0.588 6.588 10 N -0.710 5.710 11 C 0.141 3.859 12 C -0.093 4.093 13 H 0.125 0.875 14 C -0.139 4.139 15 C 0.143 3.857 16 H 0.083 0.917 17 N -0.731 5.731 18 C -0.240 4.240 19 H 0.081 0.919 20 C -0.082 4.082 21 N -0.974 5.974 22 Si 0.973 3.027 23 H -0.287 1.287 24 H -0.299 1.299 25 H -0.266 1.266 26 C -0.153 4.153 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.125 0.875 33 H 0.230 0.770 34 H 0.413 0.587 35 H 0.064 0.936 36 H 0.044 0.956 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.371 0.629 40 H 0.250 0.750 41 H 0.053 0.947 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.472 25.228 11.535 28.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.054 4.054 3 N -0.155 5.155 4 N -0.136 5.136 5 C -0.053 4.053 6 C -0.028 4.028 7 C -0.336 4.336 8 C 0.378 3.622 9 O -0.469 6.469 10 N -0.361 5.361 11 C 0.017 3.983 12 C -0.112 4.112 13 H 0.143 0.857 14 C -0.178 4.178 15 C 0.033 3.967 16 H 0.101 0.899 17 N -0.369 5.369 18 C -0.372 4.372 19 H 0.098 0.902 20 C -0.274 4.274 21 N -0.625 5.625 22 Si 0.802 3.198 23 H -0.215 1.215 24 H -0.226 1.226 25 H -0.191 1.191 26 C -0.194 4.194 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.143 0.857 33 H 0.246 0.754 34 H 0.250 0.750 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.203 0.797 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.024 26.362 11.484 29.191 hybrid contribution 0.246 -1.675 -0.924 1.928 sum 5.270 24.687 10.561 27.364 Atomic orbital electron populations 1.20291 0.85690 1.03780 1.03560 1.22701 0.97881 0.89380 0.95485 1.77129 0.87606 1.22965 1.27814 1.48717 1.06133 1.05645 1.53103 1.22436 0.82834 0.94594 1.05481 1.23702 0.99089 0.85431 0.94612 1.20270 0.93706 0.93447 1.26165 1.17537 0.85240 0.84437 0.75012 1.90721 1.18251 1.84988 1.52961 1.45646 1.10070 1.05315 1.75118 1.21199 0.96484 0.79607 1.01029 1.22467 0.97158 0.93487 0.98080 0.85679 1.23337 0.99251 0.95268 0.99953 1.21979 0.97249 0.87614 0.89835 0.89936 1.42664 1.05543 1.42208 1.46443 1.19745 0.89568 1.12335 1.15515 0.90158 1.25605 0.98207 1.01691 1.01848 1.69829 1.17278 1.37029 1.38328 0.85142 0.78735 0.78748 0.77166 1.21465 1.22616 1.19116 1.23723 1.00583 0.99145 0.95906 0.90193 0.90122 0.89885 0.88601 0.88870 0.85712 0.75369 0.75000 0.91760 0.93762 0.90306 0.91706 0.79730 0.94166 0.92861 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.66 9.92 71.24 0.71 -0.95 16 2 C 0.11 2.72 7.26 43.52 0.32 3.03 16 3 N -0.33 -7.45 12.50 -46.68 -0.58 -8.03 16 4 N -0.36 -5.19 3.98 -367.77 -1.46 -6.65 16 5 C 0.09 0.36 11.44 127.77 1.46 1.82 16 6 C 0.12 1.64 10.99 84.28 0.93 2.57 16 7 C -0.32 -7.06 6.13 -20.15 -0.12 -7.18 16 8 C 0.59 15.43 7.81 86.67 0.68 16.11 16 9 O -0.59 -20.28 14.92 -4.05 -0.06 -20.34 16 10 N -0.71 -14.52 5.54 -466.36 -2.59 -17.11 16 11 C 0.14 3.46 5.51 86.38 0.48 3.94 16 12 C -0.09 -2.13 3.75 -10.27 -0.04 -2.17 16 13 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 14 C -0.14 -4.12 7.39 31.12 0.23 -3.89 16 15 C 0.14 5.21 4.48 45.52 0.20 5.42 16 16 H 0.08 2.88 8.10 -2.39 -0.02 2.86 16 17 N -0.73 -36.48 5.40 -320.44 -1.73 -38.21 16 18 C -0.24 -13.12 9.97 84.03 0.84 -12.29 16 19 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 20 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 21 N -0.97 -60.32 13.06 21.65 0.28 -60.03 16 22 Si 0.97 45.88 29.55 68.60 2.03 47.90 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 24 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 26 C -0.15 -4.64 7.43 31.12 0.23 -4.40 16 27 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.08 2.04 6.55 -2.39 -0.02 2.03 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.12 -0.25 8.14 -2.38 -0.02 -0.27 16 33 H 0.23 0.59 7.46 -2.91 -0.02 0.57 16 34 H 0.41 5.23 7.40 -92.71 -0.69 4.55 16 35 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.04 1.34 7.84 -2.39 -0.02 1.32 16 37 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 39 H 0.37 20.29 7.92 -92.71 -0.73 19.55 16 40 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 41 H 0.05 1.91 7.90 -2.39 -0.02 1.89 16 42 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -79.51 354.53 1.88 -77.63 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: -0.38 Total: 27.08 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 6.37 Total: -2.23 kcal Atomic # 7 Polarization: -123.96 SS G_CDS: -6.08 Total: -130.04 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.06 Total: -20.34 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -79.51 1.88 -77.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086046322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.469 kcal (2) G-P(sol) polarization free energy of solvation -79.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds