Wall clock time and date at job start Tue Mar 31 2020 03:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47190 * 2 1 4 4 C 1.35399 * 126.44254 * 265.14281 * 3 2 1 5 5 C 1.35562 * 107.16369 * 180.24264 * 4 3 2 6 6 N 1.33100 * 108.34863 * 359.77547 * 5 4 3 7 7 C 1.31618 * 109.09485 * 359.97438 * 6 5 4 8 8 C 1.47405 * 125.86540 * 179.97438 * 7 6 5 9 9 O 1.21607 * 120.00439 * 180.02562 * 8 7 6 10 10 N 1.34783 * 119.99986 * 0.03020 * 8 7 6 11 11 C 1.46498 * 120.00214 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47070 * 179.97438 * 11 10 8 13 13 H 1.08994 * 112.91116 * 43.74800 * 12 11 10 14 14 C 1.53787 * 113.61251 * 175.00109 * 12 11 10 15 15 C 1.53779 * 87.07963 * 139.97890 * 14 12 11 16 16 H 1.09006 * 113.61280 * 89.11401 * 15 14 12 17 17 N 1.46508 * 113.61245 * 219.93163 * 15 14 12 18 18 C 1.36937 * 119.99972 * 205.00077 * 17 15 14 19 19 H 1.07998 * 120.00071 * 0.02562 * 18 17 15 20 20 C 1.38812 * 119.99821 * 179.97438 * 18 17 15 21 21 N 1.31613 * 119.99956 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99813 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47590 * 89.99762 * 22 20 18 24 24 H 1.48494 * 109.47147 * 210.00256 * 22 20 18 25 25 H 1.48506 * 109.47442 * 329.99880 * 22 20 18 26 26 C 1.53779 * 87.08402 * 334.56577 * 15 14 12 27 27 H 1.08994 * 109.47347 * 59.99222 * 1 2 3 28 28 H 1.08994 * 109.47091 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46426 * 299.99604 * 1 2 3 30 30 H 1.09009 * 109.46947 * 240.00343 * 2 1 3 31 31 H 1.08994 * 109.47347 * 120.00777 * 2 1 3 32 32 H 1.08003 * 126.42024 * 0.05236 * 4 3 2 33 33 H 1.07995 * 125.82739 * 179.79221 * 5 4 3 34 34 H 0.96997 * 119.99499 * 359.97438 * 10 8 7 35 35 H 1.08998 * 109.46965 * 59.99571 * 11 10 8 36 36 H 1.09003 * 109.46664 * 299.99726 * 11 10 8 37 37 H 1.08997 * 113.61028 * 254.52850 * 14 12 11 38 38 H 1.08998 * 113.61447 * 25.34385 * 14 12 11 39 39 H 0.96996 * 119.99627 * 25.00004 * 17 15 14 40 40 H 0.97002 * 120.00143 * 179.97438 * 21 20 18 41 41 H 1.09002 * 113.61557 * 270.88569 * 26 15 14 42 42 H 1.09004 * 113.61501 * 139.97990 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3734 2.1088 -1.0853 5 6 2.7694 3.3260 -0.6389 6 7 2.6544 3.3437 0.6870 7 6 2.1982 2.1786 1.0953 8 6 1.9335 1.7968 2.4942 9 8 1.5112 0.6860 2.7519 10 7 2.1596 2.6790 3.4878 11 6 1.8970 2.2995 4.8782 12 6 2.2348 3.4732 5.7997 13 1 1.8719 4.4284 5.4205 14 6 1.8793 3.2206 7.2745 15 6 3.1992 3.9243 7.6315 16 1 3.0999 5.0030 7.7530 17 7 3.9211 3.2912 8.7380 18 6 4.7899 4.0271 9.4988 19 1 4.9425 5.0743 9.2835 20 6 5.4735 3.4273 10.5475 21 7 5.2863 2.1514 10.8108 22 14 6.6580 4.4314 11.5858 23 1 5.9273 5.0294 12.7318 24 1 7.7399 3.5503 12.0941 25 1 7.2488 5.5127 10.7569 26 6 3.7074 3.5052 6.2419 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 2.3490 1.7799 -2.1137 33 1 3.1183 4.1421 -1.2541 34 1 2.4967 3.5650 3.2823 35 1 2.5139 1.4408 5.1431 36 1 0.8445 2.0395 4.9913 37 1 0.9928 3.7598 7.6083 38 1 1.8590 2.1647 7.5441 39 1 3.7837 2.3507 8.9316 40 1 5.7643 1.7322 11.5434 41 1 4.1883 2.5271 6.2296 42 1 4.2967 4.2741 5.7423 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086070000.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:34 Heat of formation + Delta-G solvation = 52.720828 kcal Electronic energy + Delta-G solvation = -22578.683080 eV Core-core repulsion = 19174.680106 eV Total energy + Delta-G solvation = -3404.002974 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.53949 -39.56806 -38.35165 -35.57027 -34.53473 -33.26414 -30.86216 -30.36586 -29.83162 -27.34123 -25.05688 -24.51019 -23.91274 -22.89237 -21.66586 -20.98607 -20.12859 -19.02105 -17.98332 -17.02756 -16.52145 -16.15779 -15.98542 -15.15354 -14.97274 -14.77915 -14.50067 -14.16809 -14.05690 -13.79121 -13.48758 -13.30449 -12.97970 -12.87641 -12.44213 -11.89333 -11.79639 -11.72931 -11.38237 -11.21389 -10.83108 -10.56867 -10.46701 -10.35827 -10.13969 -10.10659 -9.99455 -9.80025 -9.48847 -9.15828 -8.85141 -8.75873 -6.94180 -5.76458 -3.05063 1.15446 2.17807 2.38291 3.15303 3.27152 3.44393 3.49627 3.51327 4.15439 4.29669 4.48289 4.60240 4.61796 4.88685 4.95560 4.99237 5.03457 5.11798 5.25590 5.27906 5.37124 5.48766 5.54104 5.70484 5.80693 5.82802 5.92557 5.95846 6.11414 6.23985 6.31499 6.33597 6.38780 6.45081 6.62661 6.64247 6.85603 7.14290 7.28406 7.64274 7.71373 8.03362 8.42289 9.53316 10.11773 10.46021 11.46045 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030534 B = 0.002537 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.797973 B =11034.124611 C =11361.022847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.414 5.414 4 C -0.032 4.032 5 C -0.028 4.028 6 N -0.446 5.446 7 C 0.142 3.858 8 C 0.603 3.397 9 O -0.543 6.543 10 N -0.697 5.697 11 C 0.133 3.867 12 C -0.128 4.128 13 H 0.091 0.909 14 C -0.141 4.141 15 C 0.166 3.834 16 H 0.076 0.924 17 N -0.713 5.713 18 C -0.243 4.243 19 H 0.071 0.929 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.161 4.161 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.182 0.818 33 H 0.177 0.823 34 H 0.412 0.588 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.078 0.922 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.855 -1.724 -25.850 27.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.027 4.027 3 N -0.094 5.094 4 C -0.171 4.171 5 C -0.182 4.182 6 N -0.168 5.168 7 C -0.117 4.117 8 C 0.386 3.614 9 O -0.420 6.420 10 N -0.348 5.348 11 C 0.011 3.989 12 C -0.147 4.147 13 H 0.109 0.891 14 C -0.181 4.181 15 C 0.054 3.946 16 H 0.094 0.906 17 N -0.351 5.351 18 C -0.374 4.374 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.202 4.202 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.199 0.801 33 H 0.195 0.805 34 H 0.248 0.752 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.911 -1.943 -24.909 26.878 hybrid contribution 0.668 -0.060 -0.265 0.722 sum -9.242 -2.003 -25.174 26.892 Atomic orbital electron populations 1.22064 0.93496 1.03475 1.02998 1.22141 0.96386 0.78735 1.05417 1.45292 1.45128 1.12867 1.06130 1.22918 1.06989 0.94086 0.93083 1.22432 1.07143 0.97587 0.91001 1.70213 1.15139 1.18726 1.12679 1.22722 1.10064 0.88540 0.90379 1.16475 0.78251 0.84627 0.82015 1.90800 1.46860 1.20726 1.83650 1.45741 1.65366 1.17287 1.06383 1.21547 1.01167 0.98143 0.78082 1.22655 0.99710 0.97351 0.94995 0.89125 1.23448 0.99780 1.01880 0.93014 1.21522 0.89995 0.96126 0.86991 0.90615 1.42414 1.48843 1.10573 1.33245 1.19311 1.16308 0.93563 1.08215 0.91078 1.24767 1.00795 0.96063 0.99369 1.69659 1.45982 1.10037 1.32430 0.86188 0.80604 0.78950 0.80445 1.21707 1.21790 1.20729 1.23956 0.93594 1.01960 1.00727 0.92329 0.90271 0.91267 0.88993 0.87103 0.80125 0.80541 0.75167 0.90838 0.91371 0.91945 0.90093 0.78081 0.93474 0.90351 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 10.23 37.16 0.38 -0.79 16 2 C 0.09 0.74 6.17 -4.04 -0.02 0.71 16 3 N -0.41 -4.12 2.76 -114.58 -0.32 -4.44 16 4 C -0.03 -0.26 11.53 -16.93 -0.20 -0.45 16 5 C -0.03 -0.27 11.85 -17.96 -0.21 -0.48 16 6 N -0.45 -5.54 10.89 -11.26 -0.12 -5.67 16 7 C 0.14 1.80 7.78 -154.52 -1.20 0.59 16 8 C 0.60 8.33 7.81 -12.53 -0.10 8.23 16 9 O -0.54 -8.38 14.49 5.27 0.08 -8.30 16 10 N -0.70 -8.93 5.55 -61.39 -0.34 -9.27 16 11 C 0.13 1.77 5.51 -4.04 -0.02 1.75 16 12 C -0.13 -1.75 3.76 -89.80 -0.34 -2.09 16 13 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 14 C -0.14 -2.25 7.39 -25.92 -0.19 -2.44 16 15 C 0.17 3.23 4.48 -67.12 -0.30 2.93 16 16 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 17 N -0.71 -17.90 5.40 -52.63 -0.28 -18.19 16 18 C -0.24 -6.76 9.97 -15.06 -0.15 -6.91 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -28.36 13.06 55.49 0.72 -27.63 16 22 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 26 C -0.16 -2.73 7.43 -25.92 -0.19 -2.92 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.67 7.84 -51.92 -0.41 0.27 16 30 H 0.09 0.45 8.13 -51.92 -0.42 0.02 16 31 H 0.11 1.06 6.64 -51.93 -0.35 0.72 16 32 H 0.18 0.72 8.06 -52.48 -0.42 0.29 16 33 H 0.18 1.15 8.06 -52.49 -0.42 0.72 16 34 H 0.41 4.89 8.15 -40.82 -0.33 4.56 16 35 H 0.07 1.08 7.84 -51.93 -0.41 0.68 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.34 8.08 -51.93 -0.42 0.92 16 39 H 0.39 10.27 7.93 -40.82 -0.32 9.95 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.08 1.45 7.90 -51.93 -0.41 1.04 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 354.16 15.07 5.34 5.34 Total: -1.00 -33.08 354.16 -9.01 -42.09 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -6.42 Total: 10.98 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -2.64 Total: -2.37 kcal Atomic # 7 Polarization: -64.85 SS G_CDS: -0.34 Total: -65.19 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.08 Total: -8.30 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.08 -9.01 -42.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086070000.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.807 kcal (2) G-P(sol) polarization free energy of solvation -33.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds