Wall clock time and date at job start Tue Mar 31 2020 03:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47190 * 2 1 4 4 C 1.35399 * 126.44254 * 265.14281 * 3 2 1 5 5 C 1.35562 * 107.16369 * 180.24264 * 4 3 2 6 6 N 1.33100 * 108.34863 * 359.77547 * 5 4 3 7 7 C 1.31618 * 109.09485 * 359.97438 * 6 5 4 8 8 C 1.47405 * 125.86540 * 179.97438 * 7 6 5 9 9 O 1.21607 * 120.00439 * 180.02562 * 8 7 6 10 10 N 1.34783 * 119.99986 * 0.03020 * 8 7 6 11 11 C 1.46498 * 120.00214 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47070 * 179.97438 * 11 10 8 13 13 H 1.08994 * 112.91116 * 43.74800 * 12 11 10 14 14 C 1.53787 * 113.61251 * 175.00109 * 12 11 10 15 15 C 1.53779 * 87.07963 * 139.97890 * 14 12 11 16 16 H 1.09006 * 113.61280 * 89.11401 * 15 14 12 17 17 N 1.46508 * 113.61245 * 219.93163 * 15 14 12 18 18 C 1.36937 * 119.99972 * 205.00077 * 17 15 14 19 19 H 1.07998 * 120.00071 * 0.02562 * 18 17 15 20 20 C 1.38812 * 119.99821 * 179.97438 * 18 17 15 21 21 N 1.31613 * 119.99956 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99813 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47590 * 89.99762 * 22 20 18 24 24 H 1.48494 * 109.47147 * 210.00256 * 22 20 18 25 25 H 1.48506 * 109.47442 * 329.99880 * 22 20 18 26 26 C 1.53779 * 87.08402 * 334.56577 * 15 14 12 27 27 H 1.08994 * 109.47347 * 59.99222 * 1 2 3 28 28 H 1.08994 * 109.47091 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46426 * 299.99604 * 1 2 3 30 30 H 1.09009 * 109.46947 * 240.00343 * 2 1 3 31 31 H 1.08994 * 109.47347 * 120.00777 * 2 1 3 32 32 H 1.08003 * 126.42024 * 0.05236 * 4 3 2 33 33 H 1.07995 * 125.82739 * 179.79221 * 5 4 3 34 34 H 0.96997 * 119.99499 * 359.97438 * 10 8 7 35 35 H 1.08998 * 109.46965 * 59.99571 * 11 10 8 36 36 H 1.09003 * 109.46664 * 299.99726 * 11 10 8 37 37 H 1.08997 * 113.61028 * 254.52850 * 14 12 11 38 38 H 1.08998 * 113.61447 * 25.34385 * 14 12 11 39 39 H 0.96996 * 119.99627 * 25.00004 * 17 15 14 40 40 H 0.97002 * 120.00143 * 179.97438 * 21 20 18 41 41 H 1.09002 * 113.61557 * 270.88569 * 26 15 14 42 42 H 1.09004 * 113.61501 * 139.97990 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3734 2.1088 -1.0853 5 6 2.7694 3.3260 -0.6389 6 7 2.6544 3.3437 0.6870 7 6 2.1982 2.1786 1.0953 8 6 1.9335 1.7968 2.4942 9 8 1.5112 0.6860 2.7519 10 7 2.1596 2.6790 3.4878 11 6 1.8970 2.2995 4.8782 12 6 2.2348 3.4732 5.7997 13 1 1.8719 4.4284 5.4205 14 6 1.8793 3.2206 7.2745 15 6 3.1992 3.9243 7.6315 16 1 3.0999 5.0030 7.7530 17 7 3.9211 3.2912 8.7380 18 6 4.7899 4.0271 9.4988 19 1 4.9425 5.0743 9.2835 20 6 5.4735 3.4273 10.5475 21 7 5.2863 2.1514 10.8108 22 14 6.6580 4.4314 11.5858 23 1 5.9273 5.0294 12.7318 24 1 7.7399 3.5503 12.0941 25 1 7.2488 5.5127 10.7569 26 6 3.7074 3.5052 6.2419 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 2.3490 1.7799 -2.1137 33 1 3.1183 4.1421 -1.2541 34 1 2.4967 3.5650 3.2823 35 1 2.5139 1.4408 5.1431 36 1 0.8445 2.0395 4.9913 37 1 0.9928 3.7598 7.6083 38 1 1.8590 2.1647 7.5441 39 1 3.7837 2.3507 8.9316 40 1 5.7643 1.7322 11.5434 41 1 4.1883 2.5271 6.2296 42 1 4.2967 4.2741 5.7423 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086070000.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:33 Heat of formation + Delta-G solvation = 30.476337 kcal Electronic energy + Delta-G solvation = -22579.647673 eV Core-core repulsion = 19174.680106 eV Total energy + Delta-G solvation = -3404.967567 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.28345 -40.69917 -39.67127 -36.43215 -35.78427 -34.94854 -32.28323 -31.43367 -30.76918 -28.58470 -26.45340 -25.95959 -25.04505 -23.88110 -22.55562 -22.15214 -21.19350 -20.38198 -19.09401 -18.75251 -17.41340 -17.24846 -16.90888 -16.54540 -16.26031 -15.78045 -15.58080 -15.47440 -15.05052 -14.84489 -14.71611 -14.45088 -14.35205 -13.60857 -13.42345 -13.23043 -13.03549 -13.00374 -12.93050 -12.66315 -12.35319 -12.18488 -12.08167 -11.65796 -11.56333 -11.32491 -11.17779 -11.03190 -10.85093 -10.80761 -10.22676 -9.50441 -8.97198 -7.94108 -5.22292 0.32043 1.42909 1.47564 1.49291 1.57657 1.62597 2.26354 2.36613 2.57264 3.29076 3.38204 3.70275 3.73194 3.74508 3.84236 3.94110 4.04197 4.25775 4.33399 4.34493 4.40390 4.42590 4.48308 4.55003 4.69761 4.74339 4.79383 4.97091 4.98905 5.03935 5.12550 5.21571 5.24859 5.30631 5.40957 5.52837 5.66579 5.72377 5.92439 6.28444 6.32032 6.82669 7.05289 7.33934 8.12179 8.34228 9.29520 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030534 B = 0.002537 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.797973 B =11034.124611 C =11361.022847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.091 3.909 3 N -0.414 5.414 4 C -0.008 4.008 5 C -0.048 4.048 6 N -0.466 5.466 7 C 0.102 3.898 8 C 0.599 3.401 9 O -0.569 6.569 10 N -0.694 5.694 11 C 0.141 3.859 12 C -0.098 4.098 13 H 0.118 0.882 14 C -0.132 4.132 15 C 0.144 3.856 16 H 0.080 0.920 17 N -0.730 5.730 18 C -0.242 4.242 19 H 0.078 0.922 20 C -0.080 4.080 21 N -0.972 5.972 22 Si 0.973 3.027 23 H -0.286 1.286 24 H -0.297 1.297 25 H -0.269 1.269 26 C -0.156 4.156 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.036 0.964 30 H 0.130 0.870 31 H 0.087 0.913 32 H 0.227 0.773 33 H 0.203 0.797 34 H 0.417 0.583 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.372 0.628 40 H 0.250 0.750 41 H 0.057 0.943 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.346 -0.628 -28.672 30.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.030 4.030 3 N -0.094 5.094 4 C -0.147 4.147 5 C -0.202 4.202 6 N -0.189 5.189 7 C -0.155 4.155 8 C 0.384 3.616 9 O -0.448 6.448 10 N -0.344 5.344 11 C 0.018 3.982 12 C -0.117 4.117 13 H 0.136 0.864 14 C -0.172 4.172 15 C 0.034 3.966 16 H 0.098 0.902 17 N -0.367 5.367 18 C -0.374 4.374 19 H 0.096 0.904 20 C -0.272 4.272 21 N -0.623 5.623 22 Si 0.802 3.198 23 H -0.213 1.213 24 H -0.224 1.224 25 H -0.194 1.194 26 C -0.196 4.196 27 H 0.090 0.910 28 H 0.113 0.887 29 H 0.055 0.945 30 H 0.148 0.852 31 H 0.105 0.895 32 H 0.244 0.756 33 H 0.220 0.780 34 H 0.254 0.746 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.204 0.796 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.428 -0.803 -27.763 29.668 hybrid contribution 0.786 -0.378 0.438 0.976 sum -9.641 -1.180 -27.326 29.001 Atomic orbital electron populations 1.22014 0.93106 1.04249 1.01996 1.22300 0.96681 0.77886 1.06102 1.45528 1.44475 1.13423 1.06008 1.23687 1.03737 0.93035 0.94232 1.23038 1.07623 0.99278 0.90231 1.70142 1.15272 1.18932 1.14516 1.22407 1.13124 0.89677 0.90337 1.16735 0.77698 0.84281 0.82912 1.90775 1.48090 1.21674 1.84250 1.45648 1.65353 1.17472 1.05962 1.21360 1.01130 0.97243 0.78499 1.22477 0.96683 0.98701 0.93823 0.86365 1.23309 0.98486 1.01079 0.94321 1.21942 0.91797 0.96494 0.86327 0.90152 1.42626 1.49382 1.10051 1.34632 1.19733 1.15793 0.93983 1.07868 0.90379 1.25594 1.03218 0.97170 1.01203 1.69821 1.47540 1.11741 1.33219 0.85138 0.78248 0.77578 0.78812 1.21331 1.22420 1.19352 1.23753 0.95777 1.00915 0.99183 0.90954 0.88665 0.94460 0.85210 0.89477 0.75623 0.78029 0.74560 0.92695 0.90711 0.90073 0.91088 0.79580 0.94093 0.92456 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 10.23 71.98 0.74 -1.29 16 2 C 0.09 1.26 6.17 86.38 0.53 1.80 16 3 N -0.41 -7.51 2.76 -516.44 -1.42 -8.93 16 4 C -0.01 -0.10 11.53 83.52 0.96 0.87 16 5 C -0.05 -0.79 11.85 83.88 0.99 0.20 16 6 N -0.47 -11.09 10.89 -189.53 -2.06 -13.15 16 7 C 0.10 2.52 7.78 136.28 1.06 3.58 16 8 C 0.60 16.78 7.81 86.66 0.68 17.46 16 9 O -0.57 -18.11 14.49 -4.05 -0.06 -18.17 16 10 N -0.69 -17.64 5.55 -466.39 -2.59 -20.23 16 11 C 0.14 3.70 5.51 86.38 0.48 4.18 16 12 C -0.10 -2.54 3.76 -10.27 -0.04 -2.58 16 13 H 0.12 2.52 8.14 -2.39 -0.02 2.51 16 14 C -0.13 -4.10 7.39 31.12 0.23 -3.87 16 15 C 0.14 5.56 4.48 45.51 0.20 5.77 16 16 H 0.08 3.02 8.10 -2.38 -0.02 3.00 16 17 N -0.73 -37.29 5.40 -320.43 -1.73 -39.03 16 18 C -0.24 -13.58 9.97 84.03 0.84 -12.74 16 19 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 20 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 21 N -0.97 -60.67 13.06 21.65 0.28 -60.39 16 22 Si 0.97 46.73 29.55 68.60 2.03 48.75 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 24 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 26 C -0.16 -5.21 7.43 31.12 0.23 -4.98 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.04 0.73 7.84 -2.38 -0.02 0.71 16 30 H 0.13 0.80 8.13 -2.38 -0.02 0.78 16 31 H 0.09 1.66 6.64 -2.39 -0.02 1.65 16 32 H 0.23 0.55 8.06 -2.91 -0.02 0.53 16 33 H 0.20 2.01 8.06 -2.91 -0.02 1.98 16 34 H 0.42 9.63 8.15 -92.71 -0.76 8.88 16 35 H 0.05 1.67 7.84 -2.39 -0.02 1.65 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.07 2.36 8.08 -2.39 -0.02 2.35 16 39 H 0.37 20.57 7.93 -92.71 -0.73 19.84 16 40 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 41 H 0.06 2.18 7.90 -2.39 -0.02 2.16 16 42 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -74.02 354.16 1.36 -72.66 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: -0.46 Total: 34.30 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 7.37 Total: 4.19 kcal Atomic # 7 Polarization: -134.20 SS G_CDS: -7.53 Total: -141.73 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.06 Total: -18.17 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.75 kcal Total: -74.02 1.36 -72.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086070000.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.137 kcal (2) G-P(sol) polarization free energy of solvation -74.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds