Wall clock time and date at job start Tue Mar 31 2020 02:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30855 * 125.41408 * 2 1 4 4 C 1.33324 * 109.68464 * 179.82805 * 3 2 1 5 5 C 1.36662 * 107.78292 * 0.42892 * 4 3 2 6 6 C 1.46770 * 126.84584 * 179.74068 * 5 4 3 7 7 O 1.21681 * 120.00027 * 185.50048 * 6 5 4 8 8 N 1.34780 * 119.99546 * 5.50642 * 6 5 4 9 9 C 1.46498 * 119.99774 * 185.13413 * 8 6 5 10 10 C 1.52991 * 109.47193 * 179.97438 * 9 8 6 11 11 H 1.08994 * 112.85325 * 316.19784 * 10 9 8 12 12 C 1.53785 * 113.61377 * 87.50391 * 10 9 8 13 13 C 1.53784 * 87.08074 * 139.98047 * 12 10 9 14 14 H 1.09006 * 113.61338 * 89.11663 * 13 12 10 15 15 N 1.46501 * 113.69319 * 220.00880 * 13 12 10 16 16 C 1.36943 * 119.99841 * 252.53930 * 15 13 12 17 17 H 1.07994 * 119.99976 * 359.97438 * 16 15 13 18 18 C 1.38814 * 119.99515 * 179.97438 * 16 15 13 19 19 N 1.31616 * 120.00211 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99644 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47296 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47526 * 119.99973 * 20 18 16 23 23 H 1.48502 * 109.47205 * 240.00086 * 20 18 16 24 24 C 1.53779 * 87.08365 * 334.57036 * 13 12 10 25 25 N 1.34495 * 125.41798 * 180.30634 * 2 1 3 26 26 C 1.46498 * 126.47576 * 0.03258 * 25 2 1 27 27 H 1.09005 * 109.46810 * 269.69471 * 1 2 3 28 28 H 1.08993 * 109.47150 * 29.69689 * 1 2 3 29 29 H 1.08995 * 109.46810 * 149.69838 * 1 2 3 30 30 H 1.07999 * 126.10864 * 180.13564 * 4 3 2 31 31 H 0.96996 * 119.99999 * 5.13825 * 8 6 5 32 32 H 1.09002 * 109.47060 * 300.00439 * 9 8 6 33 33 H 1.09005 * 109.46896 * 59.99953 * 9 8 6 34 34 H 1.08998 * 113.61432 * 254.52819 * 12 10 9 35 35 H 1.09004 * 113.61196 * 25.43517 * 12 10 9 36 36 H 0.96998 * 119.99695 * 72.53139 * 15 13 12 37 37 H 0.96998 * 119.99632 * 179.97438 * 19 18 16 38 38 H 1.09005 * 113.61239 * 270.88345 * 24 13 12 39 39 H 1.08997 * 113.61792 * 139.98139 * 24 13 12 40 40 H 1.08994 * 109.47134 * 85.59665 * 26 25 2 41 41 H 1.08997 * 109.47306 * 205.60016 * 26 25 2 42 42 H 1.09005 * 109.46774 * 325.60115 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0665 0.0000 4 6 3.5486 0.7050 0.0038 5 6 3.5976 -0.6607 -0.0035 6 6 4.8030 -1.4981 -0.0080 7 8 4.7041 -2.7062 -0.1154 8 7 6.0193 -0.9290 0.1070 9 6 7.2264 -1.7507 -0.0102 10 6 8.4636 -0.8663 0.1571 11 1 8.3907 0.0719 -0.3928 12 6 8.9031 -0.6922 1.6204 13 6 10.3513 -0.8130 1.1175 14 1 10.7951 0.1406 0.8313 15 7 11.2166 -1.6015 1.9983 16 6 12.1705 -0.9783 2.7580 17 1 12.2852 0.0944 2.7074 18 6 12.9900 -1.7254 3.5929 19 7 12.8498 -3.0326 3.6549 20 14 14.2907 -0.8753 4.6297 21 1 14.2443 0.5879 4.3801 22 1 14.0298 -1.1412 6.0671 23 1 15.6326 -1.3967 4.2655 24 6 9.7892 -1.6120 -0.0701 25 7 2.2865 -1.0960 -0.0059 26 6 1.8312 -2.4885 -0.0140 27 1 -0.3633 -0.0055 1.0277 28 1 -0.3633 0.8926 -0.5091 29 1 -0.3633 -0.8872 -0.5185 30 1 4.3978 1.3723 0.0067 31 1 6.0953 0.0246 0.2674 32 1 7.2203 -2.5179 0.7641 33 1 7.2493 -2.2250 -0.9914 34 1 8.6649 0.2876 2.0343 35 1 8.5963 -1.5129 2.2690 36 1 11.1137 -2.5649 2.0435 37 1 13.4227 -3.5546 4.2381 38 1 9.7247 -2.6840 0.1163 39 1 10.2663 -1.3747 -1.0210 40 1 1.6438 -2.8034 -1.0404 41 1 2.5989 -3.1243 0.4268 42 1 0.9120 -2.5735 0.5657 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086177319.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:56 Heat of formation + Delta-G solvation = 49.900026 kcal Electronic energy + Delta-G solvation = -22434.854535 eV Core-core repulsion = 19030.729242 eV Total energy + Delta-G solvation = -3404.125293 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.54740 -39.61001 -38.38350 -35.04580 -34.19633 -33.31624 -32.25373 -30.33963 -28.67780 -27.39258 -26.47405 -25.10262 -23.94994 -22.97717 -21.17354 -20.75441 -20.03395 -19.09389 -17.92613 -17.05093 -16.50427 -16.39656 -15.98750 -15.30772 -14.87834 -14.62483 -14.37944 -14.11456 -13.72948 -13.66124 -13.41023 -13.34947 -13.12367 -12.95042 -12.76933 -12.72999 -11.93462 -11.83686 -11.42360 -11.25418 -10.86571 -10.69556 -10.50218 -10.24114 -10.12233 -10.03588 -9.94387 -9.84216 -9.52300 -9.17950 -8.88428 -8.70696 -6.97233 -5.79301 -3.08113 1.04483 2.17141 2.51299 3.15305 3.16341 3.42017 3.47695 3.49969 3.99615 4.34191 4.46454 4.57569 4.64934 4.82976 4.93070 4.96911 4.97903 5.05213 5.13540 5.20772 5.22186 5.40783 5.45448 5.48425 5.75853 5.79128 5.87019 5.91749 6.07822 6.17198 6.22169 6.29159 6.34234 6.40877 6.58524 6.71054 6.80863 7.09939 7.32244 7.61409 7.69000 8.01681 8.39316 9.50468 10.08686 10.42731 11.43152 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.032824 B = 0.002416 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.818248 B =11588.237839 C =11777.280116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.224 3.776 3 N -0.494 5.494 4 C 0.039 3.961 5 C -0.086 4.086 6 C 0.592 3.408 7 O -0.549 6.549 8 N -0.710 5.710 9 C 0.135 3.865 10 C -0.128 4.128 11 H 0.090 0.910 12 C -0.161 4.161 13 C 0.166 3.834 14 H 0.076 0.924 15 N -0.713 5.713 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.142 4.142 25 N -0.424 5.424 26 C 0.065 3.935 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.180 0.820 31 H 0.403 0.597 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.385 0.615 37 H 0.255 0.745 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.423 4.826 -9.975 26.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.038 4.038 3 N -0.213 5.213 4 C -0.115 4.115 5 C -0.203 4.203 6 C 0.378 3.622 7 O -0.428 6.428 8 N -0.360 5.360 9 C 0.012 3.988 10 C -0.147 4.147 11 H 0.108 0.892 12 C -0.203 4.203 13 C 0.054 3.946 14 H 0.094 0.906 15 N -0.351 5.351 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.210 4.210 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.182 4.182 25 N -0.105 5.105 26 C -0.077 4.077 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.197 0.803 31 H 0.238 0.762 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.219 0.781 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.125 0.875 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -24.651 4.655 -9.964 26.993 hybrid contribution 1.030 -0.317 0.710 1.290 sum -23.621 4.337 -9.254 25.737 Atomic orbital electron populations 1.20272 0.84353 1.04401 1.03912 1.23455 0.95956 0.81168 1.03227 1.70107 1.02158 1.28087 1.20921 1.22654 0.95228 0.91239 1.02396 1.20796 0.85377 0.94963 1.19166 1.16772 0.82192 0.86517 0.76724 1.90787 1.86808 1.14136 1.51076 1.45692 1.05003 1.12637 1.72692 1.21503 0.81736 0.93539 1.02002 1.22656 0.93168 0.99010 0.99890 0.89181 1.23961 1.01207 1.01275 0.93809 1.21520 0.88785 0.94732 0.89607 0.90619 1.42423 1.38481 1.06435 1.47736 1.19351 1.09258 0.91999 1.16821 0.91017 1.24778 1.00117 0.95533 1.00588 1.69670 1.41813 1.04275 1.42253 0.86117 0.81523 0.78478 0.80065 1.20516 1.21859 1.21859 1.23451 0.94230 1.00347 1.00132 1.45085 1.05167 1.08363 1.51884 1.22295 1.02415 0.78887 1.04082 0.89703 0.88712 0.90547 0.80312 0.76208 0.90886 0.91536 0.92657 0.90336 0.78076 0.93503 0.90093 0.91928 0.90099 0.87467 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.01 36.01 0.36 -0.01 16 2 C 0.22 2.20 7.88 -155.61 -1.23 0.97 16 3 N -0.49 -5.82 11.20 -10.58 -0.12 -5.93 16 4 C 0.04 0.43 11.36 -17.47 -0.20 0.23 16 5 C -0.09 -1.02 6.91 -82.14 -0.57 -1.59 16 6 C 0.59 7.73 7.78 -12.81 -0.10 7.63 16 7 O -0.55 -8.69 14.86 5.21 0.08 -8.62 16 8 N -0.71 -8.01 5.53 -61.59 -0.34 -8.35 16 9 C 0.13 1.70 5.51 -4.05 -0.02 1.68 16 10 C -0.13 -1.64 3.75 -89.81 -0.34 -1.98 16 11 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 12 C -0.16 -2.60 7.43 -25.92 -0.19 -2.80 16 13 C 0.17 3.14 4.48 -67.12 -0.30 2.84 16 14 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 15 N -0.71 -17.64 5.40 -52.63 -0.28 -17.92 16 16 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 19 N -0.93 -28.12 13.06 55.49 0.72 -27.40 16 20 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 C -0.14 -2.19 7.39 -25.92 -0.19 -2.38 16 25 N -0.42 -4.40 3.17 -117.27 -0.37 -4.77 16 26 C 0.07 0.50 10.26 59.85 0.61 1.11 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.25 7.77 -51.93 -0.40 -0.15 16 30 H 0.18 1.41 7.51 -52.49 -0.39 1.02 16 31 H 0.40 3.58 7.47 -40.82 -0.30 3.27 16 32 H 0.07 1.06 7.84 -51.93 -0.41 0.65 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.41 7.90 -51.93 -0.41 1.00 16 36 H 0.39 10.16 7.92 -40.82 -0.32 9.84 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.11 1.04 6.37 -51.93 -0.33 0.71 16 42 H 0.09 0.40 7.85 -51.93 -0.41 -0.01 16 LS Contribution 352.28 15.07 5.31 5.31 Total: -1.00 -34.38 352.28 -8.76 -43.14 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -6.33 Total: 8.91 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -2.41 Total: -1.63 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: -0.39 Total: -64.38 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.08 Total: -8.62 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.38 -8.76 -43.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086177319.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.045 kcal (2) G-P(sol) polarization free energy of solvation -34.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds