Wall clock time and date at job start Tue Mar 31 2020 02:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30452 * 125.99165 * 2 1 4 4 N 1.39932 * 108.90042 * 180.26716 * 3 2 1 5 5 C 1.46499 * 125.75288 * 179.73808 * 4 3 2 6 6 C 1.34258 * 108.48775 * 359.73571 * 4 3 2 7 7 C 1.38041 * 107.42075 * 359.97438 * 6 4 3 8 8 C 1.47431 * 126.41425 * 179.97438 * 7 6 4 9 9 O 1.21603 * 119.99585 * 180.02562 * 8 7 6 10 10 N 1.34772 * 120.00082 * 0.02658 * 8 7 6 11 11 C 1.46498 * 120.00293 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47712 * 180.02562 * 11 10 8 13 13 H 1.09002 * 112.90381 * 316.24816 * 12 11 10 14 14 C 1.54050 * 113.61856 * 87.50177 * 12 11 10 15 15 C 1.53783 * 86.98283 * 139.98369 * 14 12 11 16 16 H 1.09000 * 113.61554 * 219.97995 * 15 14 12 17 17 N 1.46498 * 113.61758 * 89.15928 * 15 14 12 18 18 C 1.36943 * 119.99752 * 105.58532 * 17 15 14 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 15 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 15 21 21 N 1.31611 * 120.00081 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99814 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47483 * 90.00178 * 22 20 18 24 24 H 1.48498 * 109.47011 * 210.00042 * 22 20 18 25 25 H 1.48502 * 109.47495 * 329.99664 * 22 20 18 26 26 C 1.53775 * 113.61795 * 185.00052 * 12 11 10 27 27 H 1.09002 * 109.46942 * 270.16703 * 1 2 3 28 28 H 1.09004 * 109.47445 * 30.16290 * 1 2 3 29 29 H 1.09003 * 109.47575 * 150.16804 * 1 2 3 30 30 H 1.09002 * 109.46924 * 269.99906 * 5 4 3 31 31 H 1.08998 * 109.47250 * 30.00305 * 5 4 3 32 32 H 1.09009 * 109.46933 * 150.00003 * 5 4 3 33 33 H 1.08002 * 126.28599 * 179.97438 * 6 4 3 34 34 H 0.97004 * 120.00017 * 0.02562 * 10 8 7 35 35 H 1.08998 * 109.47102 * 59.99754 * 11 10 8 36 36 H 1.09008 * 109.46796 * 300.00200 * 11 10 8 37 37 H 1.08997 * 113.61361 * 25.47986 * 14 12 11 38 38 H 1.09001 * 113.69604 * 254.49568 * 14 12 11 39 39 H 0.97001 * 120.00384 * 285.86888 * 17 15 14 40 40 H 0.97008 * 120.00329 * 179.97438 * 21 20 18 41 41 H 1.09000 * 113.62018 * 105.46550 * 26 12 11 42 42 H 1.09007 * 113.61161 * 334.56656 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6442 -0.0062 5 6 4.7786 1.5291 -0.0136 6 6 3.6438 -0.6979 -0.0041 7 6 2.3372 -1.1432 0.0039 8 6 1.8915 -2.5485 0.0082 9 8 0.7039 -2.8096 0.0149 10 7 2.8003 -3.5437 0.0048 11 6 2.3575 -4.9401 0.0086 12 6 3.5783 -5.8624 0.0042 13 1 4.3508 -5.5403 -0.6941 14 6 4.1142 -6.1837 1.4123 15 6 4.3368 -7.6204 0.9112 16 1 4.0801 -8.3838 1.6457 17 7 5.6538 -7.8335 0.3061 18 6 6.6166 -8.5284 0.9884 19 1 6.4034 -8.9231 1.9709 20 6 7.8664 -8.7253 0.4175 21 7 8.7915 -9.3936 1.0731 22 14 8.2352 -8.0419 -1.2814 23 1 8.7850 -6.6683 -1.1538 24 1 9.2294 -8.9118 -1.9598 25 1 6.9847 -8.0023 -2.0814 26 6 3.2232 -7.3539 -0.1152 27 1 -0.3633 0.0030 1.0277 28 1 -0.3634 0.8885 -0.5164 29 1 -0.3634 -0.8915 -0.5112 30 1 5.0629 1.7468 -1.0431 31 1 4.5333 2.4586 0.5000 32 1 5.6084 1.0400 0.4968 33 1 4.5297 -1.3157 -0.0080 34 1 3.7477 -3.3354 -0.0001 35 1 1.7535 -5.1321 -0.8782 36 1 1.7622 -5.1301 0.9018 37 1 3.3594 -6.1062 2.1949 38 1 5.0373 -5.6596 1.6597 39 1 5.8453 -7.4789 -0.5763 40 1 9.6648 -9.5316 0.6739 41 1 3.4274 -7.7740 -1.1000 42 1 2.2252 -7.5957 0.2506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086327899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:44 Heat of formation + Delta-G solvation = 70.180724 kcal Electronic energy + Delta-G solvation = -22640.763354 eV Core-core repulsion = 19237.517498 eV Total energy + Delta-G solvation = -3403.245856 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.67165 -39.48147 -38.44466 -34.81126 -34.18032 -33.27099 -31.18961 -30.49117 -29.64964 -27.63620 -25.96976 -25.18963 -23.59742 -22.62484 -21.76188 -20.51653 -19.95040 -18.67249 -17.84356 -17.61272 -16.21578 -16.10009 -15.84041 -15.20261 -14.89143 -14.54035 -14.44287 -14.02750 -13.82574 -13.54371 -13.46812 -13.28717 -12.84096 -12.81969 -12.53711 -12.40533 -12.21528 -12.04551 -11.55185 -11.37402 -11.12637 -10.96182 -10.54109 -10.33666 -10.12707 -9.84005 -9.68283 -9.64154 -9.52843 -9.12422 -8.95610 -8.79522 -7.34236 -5.83775 -3.19975 1.23123 1.95563 2.02689 3.24935 3.30180 3.32826 3.38899 3.39161 4.03517 4.28613 4.51635 4.60666 4.69148 4.85458 4.92637 4.95879 4.96900 5.02493 5.17316 5.22132 5.35930 5.43595 5.51037 5.53452 5.70367 5.73396 5.80228 5.88475 5.93914 6.11871 6.22007 6.30577 6.37905 6.46150 6.50896 6.60126 6.73566 6.87083 7.28674 7.55925 7.94539 8.27523 8.35987 9.13873 9.86041 10.05375 11.34398 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018672 B = 0.003192 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.232684 B = 8769.637658 C = 9840.583036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.132 3.868 3 N -0.305 5.305 4 N -0.362 5.362 5 C 0.096 3.904 6 C 0.101 3.899 7 C -0.288 4.288 8 C 0.592 3.408 9 O -0.546 6.546 10 N -0.725 5.725 11 C 0.133 3.867 12 C -0.123 4.123 13 H 0.088 0.912 14 C -0.166 4.166 15 C 0.172 3.828 16 H 0.070 0.930 17 N -0.730 5.730 18 C -0.246 4.246 19 H 0.092 0.908 20 C 0.005 3.995 21 N -0.932 5.932 22 Si 0.884 3.116 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.277 1.277 26 C -0.148 4.148 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.184 0.816 34 H 0.397 0.603 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.362 0.638 40 H 0.260 0.740 41 H 0.067 0.933 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.399 20.448 -3.200 23.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.036 4.036 3 N -0.127 5.127 4 N -0.140 5.140 5 C -0.045 4.045 6 C -0.051 4.051 7 C -0.303 4.303 8 C 0.380 3.620 9 O -0.424 6.424 10 N -0.375 5.375 11 C 0.010 3.990 12 C -0.142 4.142 13 H 0.107 0.893 14 C -0.207 4.207 15 C 0.060 3.940 16 H 0.088 0.912 17 N -0.371 5.371 18 C -0.376 4.376 19 H 0.110 0.890 20 C -0.191 4.191 21 N -0.579 5.579 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.203 1.203 26 C -0.187 4.187 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.115 0.885 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.201 0.799 34 H 0.231 0.769 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.195 0.805 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.910 21.461 -3.027 24.730 hybrid contribution 1.241 -0.207 -1.235 1.763 sum -10.669 21.254 -4.262 24.161 Atomic orbital electron populations 1.20343 0.85612 1.04004 1.03573 1.22485 0.97294 0.88724 0.95057 1.77192 0.85956 1.22682 1.26861 1.48302 1.06194 1.04782 1.54687 1.22016 0.83757 0.94757 1.03959 1.23146 0.99075 0.85323 0.97549 1.20300 0.92062 0.94651 1.23306 1.17227 0.85619 0.83455 0.75733 1.90728 1.16319 1.84324 1.51078 1.45888 1.09484 1.06434 1.75725 1.21442 0.96714 0.78850 1.01957 1.22798 0.96577 0.95060 0.99778 0.89327 1.23900 1.00540 1.01726 0.94535 1.21011 0.85060 0.94064 0.93847 0.91194 1.42518 1.10099 1.65890 1.18577 1.19117 0.90903 1.26642 1.00925 0.89022 1.24681 0.96184 1.00232 0.97979 1.69695 1.04883 1.45350 1.38022 0.86564 0.77710 0.78718 0.85617 1.21127 1.21642 1.20297 1.23433 1.00015 0.94080 1.01197 0.90205 0.91154 0.88544 0.90167 0.88844 0.88873 0.79916 0.76919 0.91746 0.91335 0.90890 0.91358 0.80542 0.92975 0.91456 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 9.92 36.00 0.36 -0.44 16 2 C 0.13 1.61 7.26 -82.02 -0.60 1.01 16 3 N -0.30 -3.64 12.50 33.89 0.42 -3.22 16 4 N -0.36 -3.33 3.98 -67.60 -0.27 -3.60 16 5 C 0.10 0.45 11.44 59.85 0.68 1.13 16 6 C 0.10 0.90 10.99 -16.56 -0.18 0.72 16 7 C -0.29 -3.40 6.13 -105.07 -0.64 -4.05 16 8 C 0.59 7.86 7.81 -12.52 -0.10 7.76 16 9 O -0.55 -8.80 14.92 5.28 0.08 -8.72 16 10 N -0.72 -8.33 5.54 -61.38 -0.34 -8.67 16 11 C 0.13 1.65 5.51 -4.04 -0.02 1.62 16 12 C -0.12 -1.64 3.64 -89.67 -0.33 -1.97 16 13 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 14 C -0.17 -2.52 7.45 -25.78 -0.19 -2.72 16 15 C 0.17 3.10 4.55 -67.12 -0.31 2.80 16 16 H 0.07 1.31 8.11 -51.93 -0.42 0.89 16 17 N -0.73 -16.47 5.11 -52.64 -0.27 -16.74 16 18 C -0.25 -6.73 10.45 -15.06 -0.16 -6.88 16 19 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 20 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 21 N -0.93 -28.66 13.97 55.49 0.78 -27.89 16 22 Si 0.88 21.32 27.74 -169.99 -4.71 16.60 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.27 6.52 56.52 0.37 -5.91 16 26 C -0.15 -2.14 7.38 -25.92 -0.19 -2.33 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.10 1.10 6.56 -51.93 -0.34 0.76 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.23 8.14 -51.92 -0.42 -0.20 16 33 H 0.18 0.97 7.46 -52.49 -0.39 0.58 16 34 H 0.40 3.71 7.40 -40.82 -0.30 3.41 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.89 7.85 -51.92 -0.41 0.48 16 37 H 0.07 1.01 7.90 -51.93 -0.41 0.60 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.36 7.97 5.76 -40.82 -0.24 7.73 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.08 1.04 8.10 -51.92 -0.42 0.62 16 LS Contribution 351.32 15.07 5.29 5.29 Total: -1.00 -34.85 351.32 -7.11 -41.96 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -6.32 Total: 8.26 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -1.77 Total: -3.28 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.32 Total: -60.11 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.08 Total: -8.72 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.71 Total: 16.60 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.85 -7.11 -41.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086327899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.144 kcal (2) G-P(sol) polarization free energy of solvation -34.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds