Wall clock time and date at job start Tue Mar 31 2020 02:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30452 * 125.99165 * 2 1 4 4 N 1.39932 * 108.90042 * 180.26716 * 3 2 1 5 5 C 1.46499 * 125.75288 * 179.73808 * 4 3 2 6 6 C 1.34258 * 108.48775 * 359.73571 * 4 3 2 7 7 C 1.38041 * 107.42075 * 359.97438 * 6 4 3 8 8 C 1.47431 * 126.41425 * 179.97438 * 7 6 4 9 9 O 1.21603 * 119.99585 * 180.02562 * 8 7 6 10 10 N 1.34772 * 120.00082 * 0.02658 * 8 7 6 11 11 C 1.46498 * 120.00293 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47712 * 180.02562 * 11 10 8 13 13 H 1.09002 * 112.90381 * 316.24816 * 12 11 10 14 14 C 1.54050 * 113.61856 * 87.50177 * 12 11 10 15 15 C 1.53783 * 86.98283 * 139.98369 * 14 12 11 16 16 H 1.09000 * 113.61554 * 219.97995 * 15 14 12 17 17 N 1.46498 * 113.61758 * 89.15928 * 15 14 12 18 18 C 1.36943 * 119.99752 * 105.58532 * 17 15 14 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 15 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 15 21 21 N 1.31611 * 120.00081 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99814 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47483 * 90.00178 * 22 20 18 24 24 H 1.48498 * 109.47011 * 210.00042 * 22 20 18 25 25 H 1.48502 * 109.47495 * 329.99664 * 22 20 18 26 26 C 1.53775 * 113.61795 * 185.00052 * 12 11 10 27 27 H 1.09002 * 109.46942 * 270.16703 * 1 2 3 28 28 H 1.09004 * 109.47445 * 30.16290 * 1 2 3 29 29 H 1.09003 * 109.47575 * 150.16804 * 1 2 3 30 30 H 1.09002 * 109.46924 * 269.99906 * 5 4 3 31 31 H 1.08998 * 109.47250 * 30.00305 * 5 4 3 32 32 H 1.09009 * 109.46933 * 150.00003 * 5 4 3 33 33 H 1.08002 * 126.28599 * 179.97438 * 6 4 3 34 34 H 0.97004 * 120.00017 * 0.02562 * 10 8 7 35 35 H 1.08998 * 109.47102 * 59.99754 * 11 10 8 36 36 H 1.09008 * 109.46796 * 300.00200 * 11 10 8 37 37 H 1.08997 * 113.61361 * 25.47986 * 14 12 11 38 38 H 1.09001 * 113.69604 * 254.49568 * 14 12 11 39 39 H 0.97001 * 120.00384 * 285.86888 * 17 15 14 40 40 H 0.97008 * 120.00329 * 179.97438 * 21 20 18 41 41 H 1.09000 * 113.62018 * 105.46550 * 26 12 11 42 42 H 1.09007 * 113.61161 * 334.56656 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6442 -0.0062 5 6 4.7786 1.5291 -0.0136 6 6 3.6438 -0.6979 -0.0041 7 6 2.3372 -1.1432 0.0039 8 6 1.8915 -2.5485 0.0082 9 8 0.7039 -2.8096 0.0149 10 7 2.8003 -3.5437 0.0048 11 6 2.3575 -4.9401 0.0086 12 6 3.5783 -5.8624 0.0042 13 1 4.3508 -5.5403 -0.6941 14 6 4.1142 -6.1837 1.4123 15 6 4.3368 -7.6204 0.9112 16 1 4.0801 -8.3838 1.6457 17 7 5.6538 -7.8335 0.3061 18 6 6.6166 -8.5284 0.9884 19 1 6.4034 -8.9231 1.9709 20 6 7.8664 -8.7253 0.4175 21 7 8.7915 -9.3936 1.0731 22 14 8.2352 -8.0419 -1.2814 23 1 8.7850 -6.6683 -1.1538 24 1 9.2294 -8.9118 -1.9598 25 1 6.9847 -8.0023 -2.0814 26 6 3.2232 -7.3539 -0.1152 27 1 -0.3633 0.0030 1.0277 28 1 -0.3634 0.8885 -0.5164 29 1 -0.3634 -0.8915 -0.5112 30 1 5.0629 1.7468 -1.0431 31 1 4.5333 2.4586 0.5000 32 1 5.6084 1.0400 0.4968 33 1 4.5297 -1.3157 -0.0080 34 1 3.7477 -3.3354 -0.0001 35 1 1.7535 -5.1321 -0.8782 36 1 1.7622 -5.1301 0.9018 37 1 3.3594 -6.1062 2.1949 38 1 5.0373 -5.6596 1.6597 39 1 5.8453 -7.4789 -0.5763 40 1 9.6648 -9.5316 0.6739 41 1 3.4274 -7.7740 -1.1000 42 1 2.2252 -7.5957 0.2506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086327899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:43 Heat of formation + Delta-G solvation = 45.009814 kcal Electronic energy + Delta-G solvation = -22641.854846 eV Core-core repulsion = 19237.517498 eV Total energy + Delta-G solvation = -3404.337348 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.42866 -40.58519 -39.62651 -36.04819 -35.04314 -34.81175 -32.73147 -31.68891 -30.33881 -28.76021 -26.72288 -26.41976 -25.33750 -23.62425 -22.94605 -21.37122 -20.84636 -20.06057 -19.52759 -18.64814 -17.07139 -16.90942 -16.80824 -16.45532 -16.21285 -15.87090 -15.42986 -15.20578 -14.87921 -14.66653 -14.58890 -14.31749 -14.05399 -13.98080 -13.39107 -13.31000 -13.07885 -13.01539 -12.97547 -12.94695 -12.60834 -12.22255 -11.92465 -11.86923 -11.61115 -11.48100 -11.01235 -10.88711 -10.71255 -10.39305 -10.08016 -9.59695 -9.27214 -8.00793 -5.34518 0.51139 1.08706 1.39219 1.43406 1.44833 1.51073 2.32673 2.46621 2.50186 3.29759 3.37586 3.54451 3.69850 3.77691 3.84038 4.03905 4.08276 4.25729 4.31611 4.39655 4.41301 4.42555 4.47304 4.69390 4.75260 4.76826 4.84836 4.97099 4.97463 4.99037 5.02307 5.12913 5.31399 5.37350 5.50421 5.56258 5.60334 5.83276 5.87901 6.24538 6.49713 6.69590 7.10025 7.34273 7.86875 8.05920 9.20848 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018672 B = 0.003192 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.232684 B = 8769.637658 C = 9840.583036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.114 3.886 3 N -0.331 5.331 4 N -0.360 5.360 5 C 0.085 3.915 6 C 0.120 3.880 7 C -0.319 4.319 8 C 0.592 3.408 9 O -0.583 6.583 10 N -0.715 5.715 11 C 0.142 3.858 12 C -0.103 4.103 13 H 0.093 0.907 14 C -0.154 4.154 15 C 0.144 3.856 16 H 0.054 0.946 17 N -0.733 5.733 18 C -0.232 4.232 19 H 0.055 0.945 20 C -0.066 4.066 21 N -0.986 5.986 22 Si 0.957 3.043 23 H -0.273 1.273 24 H -0.300 1.300 25 H -0.250 1.250 26 C -0.133 4.133 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.223 0.777 34 H 0.409 0.591 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.367 0.633 40 H 0.258 0.742 41 H 0.066 0.934 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.385 22.326 -4.713 25.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 N -0.154 5.154 4 N -0.137 5.137 5 C -0.054 4.054 6 C -0.033 4.033 7 C -0.334 4.334 8 C 0.381 3.619 9 O -0.464 6.464 10 N -0.366 5.366 11 C 0.018 3.982 12 C -0.122 4.122 13 H 0.111 0.889 14 C -0.194 4.194 15 C 0.035 3.965 16 H 0.072 0.928 17 N -0.375 5.375 18 C -0.363 4.363 19 H 0.073 0.927 20 C -0.258 4.258 21 N -0.636 5.636 22 Si 0.784 3.216 23 H -0.199 1.199 24 H -0.227 1.227 25 H -0.175 1.175 26 C -0.173 4.173 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.140 0.860 33 H 0.239 0.761 34 H 0.245 0.755 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.201 0.799 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.935 23.393 -4.540 26.651 hybrid contribution 1.227 -0.786 -0.644 1.593 sum -10.708 22.607 -5.184 25.546 Atomic orbital electron populations 1.20299 0.85348 1.03830 1.03708 1.22743 0.97987 0.89208 0.95383 1.77127 0.87449 1.23074 1.27779 1.48701 1.06216 1.05558 1.53186 1.22420 0.82893 0.94655 1.05400 1.23666 0.99229 0.85506 0.94935 1.20297 0.93428 0.93778 1.25945 1.17438 0.85236 0.84222 0.75040 1.90706 1.17849 1.84914 1.52942 1.45754 1.09991 1.05787 1.75118 1.21283 0.95983 0.79053 1.01876 1.22620 0.96793 0.94586 0.98176 0.88871 1.23746 1.00570 0.98812 0.96315 1.21347 0.84391 0.95434 0.95337 0.92780 1.42425 1.10772 1.65674 1.18668 1.19059 0.91962 1.25581 0.99671 0.92720 1.25539 0.96058 1.01412 1.02754 1.69892 1.05447 1.47908 1.40391 0.85381 0.78130 0.77929 0.80158 1.19899 1.22675 1.17487 1.23343 0.99457 0.94600 0.99862 0.89925 0.89971 0.89939 0.88751 0.88610 0.86019 0.76080 0.75469 0.91676 0.91699 0.89291 0.92613 0.79893 0.93368 0.91481 0.87643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.53 9.92 71.23 0.71 -0.83 16 2 C 0.11 2.70 7.26 43.51 0.32 3.02 16 3 N -0.33 -7.52 12.50 -46.68 -0.58 -8.11 16 4 N -0.36 -5.69 3.98 -367.77 -1.46 -7.15 16 5 C 0.09 0.52 11.44 127.77 1.46 1.98 16 6 C 0.12 1.78 10.99 84.28 0.93 2.71 16 7 C -0.32 -7.05 6.13 -20.15 -0.12 -7.17 16 8 C 0.59 14.84 7.81 86.67 0.68 15.52 16 9 O -0.58 -18.52 14.92 -4.04 -0.06 -18.58 16 10 N -0.72 -14.51 5.54 -466.37 -2.59 -17.10 16 11 C 0.14 3.09 5.51 86.38 0.48 3.56 16 12 C -0.10 -2.41 3.64 -10.18 -0.04 -2.45 16 13 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 14 C -0.15 -4.33 7.45 31.21 0.23 -4.10 16 15 C 0.14 5.02 4.55 45.52 0.21 5.23 16 16 H 0.05 2.03 8.11 -2.39 -0.02 2.01 16 17 N -0.73 -32.17 5.11 -320.44 -1.64 -33.81 16 18 C -0.23 -12.81 10.45 84.03 0.88 -11.94 16 19 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 20 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 21 N -0.99 -62.18 13.97 21.65 0.30 -61.88 16 22 Si 0.96 43.45 27.74 68.60 1.90 45.35 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 24 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.25 -10.14 6.52 99.48 0.65 -9.49 16 26 C -0.13 -3.48 7.38 31.12 0.23 -3.25 16 27 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.08 1.94 6.56 -2.39 -0.02 1.93 16 30 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.12 0.07 8.14 -2.38 -0.02 0.05 16 33 H 0.22 1.30 7.46 -2.91 -0.02 1.28 16 34 H 0.41 6.17 7.40 -92.71 -0.69 5.48 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.51 7.85 -2.38 -0.02 1.49 16 37 H 0.09 2.24 7.90 -2.39 -0.02 2.22 16 38 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.37 15.20 5.76 -92.71 -0.53 14.67 16 40 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 41 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.11 2.30 8.10 -2.38 -0.02 2.28 16 Total: -1.00 -77.90 351.32 2.05 -75.85 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: -0.24 Total: 26.48 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 6.42 Total: -1.06 kcal Atomic # 7 Polarization: -122.08 SS G_CDS: -5.97 Total: -128.05 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.06 Total: -18.58 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.90 Total: 45.35 kcal Total: -77.90 2.05 -75.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086327899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.859 kcal (2) G-P(sol) polarization free energy of solvation -77.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds