Wall clock time and date at job start Tue Mar 31 2020 02:54:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.50695 * 109.46931 * 2 1
4 4 N 1.33323 * 126.10661 * 89.97772 * 3 2 1
5 5 C 1.30856 * 109.68461 * 179.97438 * 4 3 2
6 6 N 1.34495 * 109.16687 * 0.02562 * 5 4 3
7 7 H 0.96999 * 126.47976 * 179.73710 * 6 5 4
8 8 C 1.36661 * 126.10871 * 269.97512 * 3 2 1
9 9 C 1.46766 * 126.84400 * 0.02562 * 8 3 2
10 10 O 1.21687 * 120.00054 * 0.02562 * 9 8 3
11 11 N 1.34773 * 120.00152 * 179.97438 * 9 8 3
12 12 C 1.46500 * 120.00295 * 179.97438 * 11 9 8
13 13 C 1.53004 * 109.47478 * 180.02562 * 12 11 9
14 14 H 1.08994 * 112.84537 * 45.33425 * 13 12 11
15 15 C 1.53778 * 113.61367 * 176.53070 * 13 12 11
16 16 C 1.53781 * 87.07839 * 139.97936 * 15 13 12
17 17 H 1.08993 * 113.61629 * 219.92881 * 16 15 13
18 18 N 1.46505 * 113.61347 * 89.11558 * 16 15 13
19 19 C 1.36933 * 120.00108 * 154.99863 * 18 16 15
20 20 H 1.07999 * 120.00042 * 359.97438 * 19 18 16
21 21 C 1.38813 * 119.99904 * 180.02562 * 19 18 16
22 22 N 1.31622 * 120.00030 * 180.02562 * 21 19 18
23 23 Si 1.86799 * 120.00274 * 359.97438 * 21 19 18
24 24 H 1.48506 * 109.46941 * 90.00475 * 23 21 19
25 25 H 1.48497 * 109.47269 * 210.00612 * 23 21 19
26 26 H 1.48502 * 109.46967 * 330.00774 * 23 21 19
27 27 C 1.53775 * 113.61336 * 274.13805 * 13 12 11
28 28 H 1.08999 * 109.47138 * 180.02562 * 1 2 3
29 29 H 1.09003 * 109.47155 * 299.99749 * 1 2 3
30 30 H 1.08999 * 109.47433 * 59.99798 * 1 2 3
31 31 H 1.08998 * 109.46715 * 240.00406 * 2 1 3
32 32 H 1.08995 * 109.46992 * 120.00044 * 2 1 3
33 33 H 1.08005 * 125.42062 * 180.02562 * 5 4 3
34 34 H 0.97002 * 120.00025 * 0.02562 * 11 9 8
35 35 H 1.09002 * 109.47420 * 300.00359 * 12 11 9
36 36 H 1.09004 * 109.46641 * 60.00268 * 12 11 9
37 37 H 1.09005 * 113.61447 * 254.52853 * 15 13 12
38 38 H 1.08997 * 113.61819 * 25.34958 * 15 13 12
39 39 H 0.97004 * 120.00025 * 334.99868 * 18 16 15
40 40 H 0.97000 * 120.00419 * 179.97438 * 22 21 19
41 41 H 1.09003 * 113.61652 * 334.56983 * 27 13 12
42 42 H 1.09007 * 113.61682 * 105.47017 * 27 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.2938 2.1617 1.0771
5 6 2.7128 3.3448 0.7072
6 7 2.7346 3.4055 -0.6362
7 1 3.0005 4.1670 -1.1749
8 6 2.3012 2.1799 -1.1041
9 6 2.1579 1.7743 -2.5073
10 8 1.7618 0.6565 -2.7800
11 7 2.4639 2.6401 -3.4937
12 6 2.3214 2.2350 -4.8944
13 6 2.7317 3.3941 -5.8049
14 1 3.6585 3.8728 -5.4889
15 6 2.6987 3.0430 -7.3017
16 6 2.1144 4.4458 -7.5373
17 1 1.3249 4.4695 -8.2884
18 7 3.1325 5.4776 -7.7497
19 6 2.8228 6.6105 -8.4538
20 1 1.8280 6.7433 -8.8528
21 6 3.7877 7.5879 -8.6554
22 7 3.4898 8.6771 -9.3317
23 14 5.5084 7.3580 -7.9659
24 1 6.3558 6.6660 -8.9701
25 1 6.0970 8.6846 -7.6514
26 1 5.4405 6.5406 -6.7279
27 6 1.5920 4.3862 -6.0904
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8899
31 1 1.8933 -0.5138 -0.8900
32 1 1.8933 -0.5138 0.8899
33 1 2.9961 4.1455 1.3745
34 1 2.7793 3.5313 -3.2763
35 1 2.9616 1.3749 -5.0908
36 1 1.2832 1.9676 -5.0913
37 1 3.6873 2.9027 -7.7391
38 1 2.0093 2.2348 -7.5456
39 1 4.0261 5.3583 -7.3916
40 1 4.1639 9.3603 -9.4724
41 1 0.5983 3.9469 -6.0027
42 1 1.6882 5.3288 -5.5513
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001086543013.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:54:56
Heat of formation + Delta-G solvation = 44.097140 kcal
Electronic energy + Delta-G solvation = -22787.680612 eV
Core-core repulsion = 19383.303687 eV
Total energy + Delta-G solvation = -3404.376925 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-42.53909 -39.70907 -38.61324 -35.20964 -34.23261 -33.31423 -32.30272 -30.78864
-29.53961 -27.59677 -25.29180 -24.39133 -23.52401 -22.92525 -21.98404 -21.25471
-19.95687 -19.14802 -18.44760 -17.74371 -16.43185 -16.22626 -15.96644 -15.24052
-14.96154 -14.87312 -14.46310 -14.27885 -14.05186 -13.71689 -13.57211 -13.53784
-12.87160 -12.59935 -12.53739 -12.15700 -11.70270 -11.63636 -11.46645 -11.17409
-10.99764 -10.69851 -10.61298 -10.37004 -10.33792 -10.24653 -9.98745 -9.75761
-9.63144 -9.30179 -9.00811 -8.76916 -7.39935 -5.88229 -3.24944 1.01044
2.54670 2.55372 2.94295 3.09104 3.24823 3.29221 3.35310 4.11780
4.47057 4.49447 4.68706 4.79428 4.81938 4.86889 4.98690 5.27129
5.29870 5.31974 5.34302 5.38180 5.40732 5.49304 5.65340 5.74187
5.80528 5.85824 6.02454 6.03680 6.08946 6.13157 6.17855 6.30429
6.37988 6.50260 6.62212 6.78466 6.84328 7.20233 7.61026 7.89302
7.93090 8.31339 9.08678 9.80761 9.99750 11.29821
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.023277 B = 0.003057 C = 0.002831
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1202.596225 B = 9157.459593 C = 9887.473298
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.049 4.049
3 C 0.100 3.900
4 N -0.499 5.499
5 C 0.219 3.781
6 N -0.555 5.555
7 H 0.424 0.576
8 C -0.092 4.092
9 C 0.592 3.408
10 O -0.523 6.523
11 N -0.724 5.724
12 C 0.132 3.868
13 C -0.125 4.125
14 H 0.088 0.912
15 C -0.148 4.148
16 C 0.173 3.827
17 H 0.072 0.928
18 N -0.730 5.730
19 C -0.248 4.248
20 H 0.092 0.908
21 C 0.006 3.994
22 N -0.931 5.931
23 Si 0.885 3.115
24 H -0.283 1.283
25 H -0.290 1.290
26 H -0.279 1.279
27 C -0.167 4.167
28 H 0.060 0.940
29 H 0.052 0.948
30 H 0.055 0.945
31 H 0.094 0.906
32 H 0.075 0.925
33 H 0.216 0.784
34 H 0.395 0.605
35 H 0.067 0.933
36 H 0.072 0.928
37 H 0.068 0.932
38 H 0.083 0.917
39 H 0.361 0.639
40 H 0.261 0.739
41 H 0.073 0.927
42 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.885 -13.440 18.460 22.912
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.087 4.087
3 C -0.034 4.034
4 N -0.218 5.218
5 C -0.065 4.065
6 N -0.160 5.160
7 H 0.262 0.738
8 C -0.208 4.208
9 C 0.378 3.622
10 O -0.400 6.400
11 N -0.375 5.375
12 C 0.009 3.991
13 C -0.144 4.144
14 H 0.107 0.893
15 C -0.187 4.187
16 C 0.061 3.939
17 H 0.091 0.909
18 N -0.370 5.370
19 C -0.378 4.378
20 H 0.110 0.890
21 C -0.190 4.190
22 N -0.578 5.578
23 Si 0.715 3.285
24 H -0.209 1.209
25 H -0.216 1.216
26 H -0.206 1.206
27 C -0.208 4.208
28 H 0.079 0.921
29 H 0.071 0.929
30 H 0.074 0.926
31 H 0.112 0.888
32 H 0.093 0.907
33 H 0.232 0.768
34 H 0.228 0.772
35 H 0.086 0.914
36 H 0.090 0.910
37 H 0.086 0.914
38 H 0.102 0.898
39 H 0.194 0.806
40 H 0.071 0.929
41 H 0.091 0.909
42 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -2.374 -14.322 18.848 23.791
hybrid contribution 1.827 1.411 -0.346 2.335
sum -0.547 -12.910 18.502 22.568
Atomic orbital electron populations
1.21614 0.94329 1.01804 1.01799 1.20063 0.96277 0.88712 1.03682
1.21067 0.98706 0.97052 0.86598 1.70142 1.18519 1.02707 1.30464
1.25172 1.01291 0.97947 0.82060 1.43380 1.50419 1.13322 1.08907
0.73752 1.20995 1.16194 0.88346 0.95222 1.16840 0.77810 0.84957
0.82575 1.90821 1.46476 1.19786 1.82888 1.45964 1.68056 1.16509
1.06959 1.21522 1.01778 0.97534 0.78217 1.22765 1.00196 0.96056
0.95339 0.89348 1.23456 1.01993 0.99550 0.93737 1.21035 0.91921
0.87040 0.93896 0.90949 1.42520 1.09520 1.19784 1.65171 1.19113
0.98769 0.93853 1.26068 0.88992 1.24691 0.97740 0.96487 1.00098
1.69695 1.33924 1.09271 1.44906 0.86558 0.86103 0.76979 0.78834
1.20946 1.21642 1.20565 1.23894 0.96433 0.98456 1.02024 0.92147
0.92910 0.92574 0.88786 0.90659 0.76778 0.77193 0.91426 0.91007
0.91353 0.89844 0.80561 0.92919 0.90855 0.91439
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.38 9.89 37.16 0.37 -1.02 16
2 C -0.05 -0.53 5.93 -27.88 -0.17 -0.70 16
3 C 0.10 1.19 6.40 -82.52 -0.53 0.66 16
4 N -0.50 -5.60 11.20 -10.64 -0.12 -5.72 16
5 C 0.22 1.69 13.01 -90.57 -1.18 0.51 16
6 N -0.56 -4.20 6.07 -10.79 -0.07 -4.27 16
7 H 0.42 1.94 8.32 -40.82 -0.34 1.60 16
8 C -0.09 -1.01 7.08 -82.14 -0.58 -1.60 16
9 C 0.59 7.30 7.79 -12.82 -0.10 7.20 16
10 O -0.52 -7.84 14.82 5.20 0.08 -7.76 16
11 N -0.72 -7.71 5.55 -61.59 -0.34 -8.05 16
12 C 0.13 1.53 5.50 -4.04 -0.02 1.51 16
13 C -0.12 -1.59 3.62 -89.81 -0.33 -1.92 16
14 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16
15 C -0.15 -2.06 7.39 -25.92 -0.19 -2.25 16
16 C 0.17 3.05 4.57 -67.03 -0.31 2.74 16
17 H 0.07 1.33 8.10 -51.93 -0.42 0.90 16
18 N -0.73 -16.20 5.11 -52.55 -0.27 -16.47 16
19 C -0.25 -6.72 10.45 -15.06 -0.16 -6.88 16
20 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16
21 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16
22 N -0.93 -28.42 13.97 55.49 0.78 -27.65 16
23 Si 0.88 21.16 27.74 -169.99 -4.71 16.44 16
24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
25 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16
26 H -0.28 -6.17 6.52 56.52 0.37 -5.80 16
27 C -0.17 -2.46 7.44 -25.84 -0.19 -2.65 16
28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
31 H 0.09 1.11 6.48 -51.93 -0.34 0.78 16
32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
33 H 0.22 0.69 8.06 -52.48 -0.42 0.26 16
34 H 0.39 3.40 7.72 -40.82 -0.31 3.09 16
35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
36 H 0.07 0.87 7.88 -51.93 -0.41 0.46 16
37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16
38 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16
39 H 0.36 7.84 5.76 -40.82 -0.24 7.61 16
40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16
41 H 0.07 0.98 7.92 -51.93 -0.41 0.56 16
42 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16
LS Contribution 349.59 15.07 5.27 5.27
Total: -1.00 -33.77 349.59 -9.15 -42.92
By element:
Atomic # 1 Polarization: 15.87 SS G_CDS: -6.28 Total: 9.58 kcal
Atomic # 6 Polarization: -0.83 SS G_CDS: -3.48 Total: -4.31 kcal
Atomic # 7 Polarization: -62.13 SS G_CDS: -0.02 Total: -62.15 kcal
Atomic # 8 Polarization: -7.84 SS G_CDS: 0.08 Total: -7.76 kcal
Atomic # 14 Polarization: 21.16 SS G_CDS: -4.71 Total: 16.44 kcal
Total LS contribution 5.27 Total: 5.27 kcal
Total: -33.77 -9.15 -42.92 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001086543013.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.021 kcal
(2) G-P(sol) polarization free energy of solvation -33.775 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.246 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.923 kcal
(6) G-S(sol) free energy of system = (1) + (5) 44.097 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds