Wall clock time and date at job start Tue Mar 31 2020 02:54:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.50695 * 109.46931 * 2 1
4 4 N 1.33323 * 126.10661 * 89.97772 * 3 2 1
5 5 C 1.30856 * 109.68461 * 179.97438 * 4 3 2
6 6 N 1.34495 * 109.16687 * 0.02562 * 5 4 3
7 7 H 0.96999 * 126.47976 * 179.73710 * 6 5 4
8 8 C 1.36661 * 126.10871 * 269.97512 * 3 2 1
9 9 C 1.46766 * 126.84400 * 0.02562 * 8 3 2
10 10 O 1.21687 * 120.00054 * 0.02562 * 9 8 3
11 11 N 1.34773 * 120.00152 * 179.97438 * 9 8 3
12 12 C 1.46500 * 120.00295 * 179.97438 * 11 9 8
13 13 C 1.53004 * 109.47478 * 180.02562 * 12 11 9
14 14 H 1.08994 * 112.84537 * 45.33425 * 13 12 11
15 15 C 1.53778 * 113.61367 * 176.53070 * 13 12 11
16 16 C 1.53781 * 87.07839 * 139.97936 * 15 13 12
17 17 H 1.08993 * 113.61629 * 219.92881 * 16 15 13
18 18 N 1.46505 * 113.61347 * 89.11558 * 16 15 13
19 19 C 1.36933 * 120.00108 * 154.99863 * 18 16 15
20 20 H 1.07999 * 120.00042 * 359.97438 * 19 18 16
21 21 C 1.38813 * 119.99904 * 180.02562 * 19 18 16
22 22 N 1.31622 * 120.00030 * 180.02562 * 21 19 18
23 23 Si 1.86799 * 120.00274 * 359.97438 * 21 19 18
24 24 H 1.48506 * 109.46941 * 90.00475 * 23 21 19
25 25 H 1.48497 * 109.47269 * 210.00612 * 23 21 19
26 26 H 1.48502 * 109.46967 * 330.00774 * 23 21 19
27 27 C 1.53775 * 113.61336 * 274.13805 * 13 12 11
28 28 H 1.08999 * 109.47138 * 180.02562 * 1 2 3
29 29 H 1.09003 * 109.47155 * 299.99749 * 1 2 3
30 30 H 1.08999 * 109.47433 * 59.99798 * 1 2 3
31 31 H 1.08998 * 109.46715 * 240.00406 * 2 1 3
32 32 H 1.08995 * 109.46992 * 120.00044 * 2 1 3
33 33 H 1.08005 * 125.42062 * 180.02562 * 5 4 3
34 34 H 0.97002 * 120.00025 * 0.02562 * 11 9 8
35 35 H 1.09002 * 109.47420 * 300.00359 * 12 11 9
36 36 H 1.09004 * 109.46641 * 60.00268 * 12 11 9
37 37 H 1.09005 * 113.61447 * 254.52853 * 15 13 12
38 38 H 1.08997 * 113.61819 * 25.34958 * 15 13 12
39 39 H 0.97004 * 120.00025 * 334.99868 * 18 16 15
40 40 H 0.97000 * 120.00419 * 179.97438 * 22 21 19
41 41 H 1.09003 * 113.61652 * 334.56983 * 27 13 12
42 42 H 1.09007 * 113.61682 * 105.47017 * 27 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.2938 2.1617 1.0771
5 6 2.7128 3.3448 0.7072
6 7 2.7346 3.4055 -0.6362
7 1 3.0005 4.1670 -1.1749
8 6 2.3012 2.1799 -1.1041
9 6 2.1579 1.7743 -2.5073
10 8 1.7618 0.6565 -2.7800
11 7 2.4639 2.6401 -3.4937
12 6 2.3214 2.2350 -4.8944
13 6 2.7317 3.3941 -5.8049
14 1 3.6585 3.8728 -5.4889
15 6 2.6987 3.0430 -7.3017
16 6 2.1144 4.4458 -7.5373
17 1 1.3249 4.4695 -8.2884
18 7 3.1325 5.4776 -7.7497
19 6 2.8228 6.6105 -8.4538
20 1 1.8280 6.7433 -8.8528
21 6 3.7877 7.5879 -8.6554
22 7 3.4898 8.6771 -9.3317
23 14 5.5084 7.3580 -7.9659
24 1 6.3558 6.6660 -8.9701
25 1 6.0970 8.6846 -7.6514
26 1 5.4405 6.5406 -6.7279
27 6 1.5920 4.3862 -6.0904
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8899
31 1 1.8933 -0.5138 -0.8900
32 1 1.8933 -0.5138 0.8899
33 1 2.9961 4.1455 1.3745
34 1 2.7793 3.5313 -3.2763
35 1 2.9616 1.3749 -5.0908
36 1 1.2832 1.9676 -5.0913
37 1 3.6873 2.9027 -7.7391
38 1 2.0093 2.2348 -7.5456
39 1 4.0261 5.3583 -7.3916
40 1 4.1639 9.3603 -9.4724
41 1 0.5983 3.9469 -6.0027
42 1 1.6882 5.3288 -5.5513
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001086543013.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:54:55
Heat of formation + Delta-G solvation = 20.479449 kcal
Electronic energy + Delta-G solvation = -22788.704752 eV
Core-core repulsion = 19383.303687 eV
Total energy + Delta-G solvation = -3405.401065 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-43.24862 -40.74516 -39.77765 -36.27809 -35.36900 -34.75539 -33.13040 -32.60373
-30.40576 -28.69216 -26.48300 -25.65789 -24.87399 -23.76668 -23.17725 -22.08905
-20.88546 -20.16541 -19.65596 -19.47180 -17.28107 -17.17955 -16.80233 -16.63128
-16.21116 -15.75872 -15.68566 -15.44607 -15.02115 -14.83580 -14.71548 -14.62107
-14.35009 -14.06857 -13.38895 -13.31365 -13.12047 -13.03828 -12.71849 -12.41687
-12.20397 -12.02884 -11.89245 -11.65482 -11.61481 -11.45271 -11.06580 -11.04336
-10.94633 -10.78037 -10.23442 -9.53218 -9.31165 -8.03843 -5.37865 0.23685
1.35166 1.40870 1.47646 1.83771 1.87457 2.14204 2.22675 2.46887
3.26381 3.49238 3.49564 3.68346 3.71840 3.84034 3.96937 4.08589
4.19663 4.25619 4.34050 4.48588 4.53750 4.65794 4.69430 4.73632
4.77710 4.92000 4.96051 5.05720 5.07939 5.17595 5.25022 5.28450
5.31118 5.43405 5.52060 5.52158 5.79572 6.21382 6.28534 6.40721
6.90748 7.05011 7.06631 7.83199 8.01950 9.17690
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.023277 B = 0.003057 C = 0.002831
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1202.596225 B = 9157.459593 C = 9887.473298
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.050 4.050
3 C 0.084 3.916
4 N -0.534 5.534
5 C 0.238 3.762
6 N -0.543 5.543
7 H 0.439 0.561
8 C -0.109 4.109
9 C 0.591 3.409
10 O -0.556 6.556
11 N -0.715 5.715
12 C 0.140 3.860
13 C -0.105 4.105
14 H 0.090 0.910
15 C -0.133 4.133
16 C 0.144 3.856
17 H 0.056 0.944
18 N -0.733 5.733
19 C -0.233 4.233
20 H 0.055 0.945
21 C -0.066 4.066
22 N -0.985 5.985
23 Si 0.957 3.043
24 H -0.281 1.281
25 H -0.297 1.297
26 H -0.246 1.246
27 C -0.155 4.155
28 H 0.073 0.927
29 H 0.053 0.947
30 H 0.039 0.961
31 H 0.080 0.920
32 H 0.081 0.919
33 H 0.261 0.739
34 H 0.406 0.594
35 H 0.070 0.930
36 H 0.070 0.930
37 H 0.068 0.932
38 H 0.107 0.893
39 H 0.367 0.633
40 H 0.258 0.742
41 H 0.090 0.910
42 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.666 -14.373 20.596 25.124
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.088 4.088
3 C -0.051 4.051
4 N -0.254 5.254
5 C -0.046 4.046
6 N -0.149 5.149
7 H 0.280 0.720
8 C -0.226 4.226
9 C 0.379 3.621
10 O -0.435 6.435
11 N -0.366 5.366
12 C 0.017 3.983
13 C -0.123 4.123
14 H 0.109 0.891
15 C -0.172 4.172
16 C 0.035 3.965
17 H 0.075 0.925
18 N -0.375 5.375
19 C -0.364 4.364
20 H 0.073 0.927
21 C -0.257 4.257
22 N -0.635 5.635
23 Si 0.784 3.216
24 H -0.207 1.207
25 H -0.224 1.224
26 H -0.171 1.171
27 C -0.195 4.195
28 H 0.092 0.908
29 H 0.072 0.928
30 H 0.058 0.942
31 H 0.099 0.901
32 H 0.100 0.900
33 H 0.276 0.724
34 H 0.241 0.759
35 H 0.088 0.912
36 H 0.088 0.912
37 H 0.087 0.913
38 H 0.125 0.875
39 H 0.201 0.799
40 H 0.067 0.933
41 H 0.108 0.892
42 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -1.167 -15.282 21.002 25.999
hybrid contribution 1.322 1.702 -1.012 2.381
sum 0.155 -13.580 19.990 24.167
Atomic orbital electron populations
1.21548 0.93885 1.02457 1.00922 1.20041 0.96659 0.88849 1.03256
1.21256 0.99051 0.97507 0.87302 1.70139 1.20271 1.04231 1.30738
1.26070 0.98417 0.97726 0.82388 1.43316 1.49694 1.12746 1.09125
0.71958 1.20774 1.17647 0.89757 0.94381 1.16994 0.77272 0.84602
0.83241 1.90802 1.48048 1.21170 1.83462 1.45833 1.67569 1.16856
1.06367 1.21370 1.01712 0.96873 0.78341 1.22575 0.99263 0.95581
0.94922 0.89138 1.23359 1.02249 0.97338 0.94287 1.21381 0.91437
0.88328 0.95353 0.92531 1.42426 1.10779 1.19334 1.64965 1.19059
0.97100 0.95236 1.24992 0.92665 1.25546 1.02575 0.96285 1.01333
1.69891 1.35454 1.10683 1.47497 0.85383 0.79977 0.76917 0.79285
1.20695 1.22399 1.17076 1.23737 0.98131 0.98663 0.98994 0.90783
0.92835 0.94182 0.90117 0.90043 0.72368 0.75865 0.91172 0.91169
0.91343 0.87466 0.79933 0.93333 0.89168 0.92775
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.57 9.89 71.98 0.71 -1.86 16
2 C -0.05 -1.07 5.93 29.85 0.18 -0.90 16
3 C 0.08 1.89 6.40 41.96 0.27 2.16 16
4 N -0.53 -10.98 11.20 -187.59 -2.10 -13.08 16
5 C 0.24 2.90 13.01 180.33 2.35 5.25 16
6 N -0.54 -6.66 6.07 -188.04 -1.14 -7.81 16
7 H 0.44 2.52 8.32 -92.71 -0.77 1.75 16
8 C -0.11 -2.24 7.08 40.01 0.28 -1.96 16
9 C 0.59 13.73 7.79 86.47 0.67 14.40 16
10 O -0.56 -16.30 14.82 -4.31 -0.06 -16.36 16
11 N -0.72 -13.44 5.55 -466.98 -2.59 -16.03 16
12 C 0.14 2.84 5.50 86.38 0.47 3.31 16
13 C -0.10 -2.35 3.62 -10.27 -0.04 -2.39 16
14 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16
15 C -0.13 -3.33 7.39 31.12 0.23 -3.10 16
16 C 0.14 4.92 4.57 45.57 0.21 5.13 16
17 H 0.06 2.08 8.10 -2.39 -0.02 2.06 16
18 N -0.73 -31.79 5.11 -320.18 -1.64 -33.42 16
19 C -0.23 -12.79 10.45 84.03 0.88 -11.91 16
20 H 0.06 3.36 8.06 -2.91 -0.02 3.34 16
21 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16
22 N -0.98 -61.91 13.97 21.65 0.30 -61.60 16
23 Si 0.96 43.31 27.74 68.60 1.90 45.21 16
24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16
25 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16
26 H -0.25 -9.67 6.52 99.48 0.65 -9.02 16
27 C -0.15 -4.22 7.44 31.17 0.23 -3.99 16
28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16
29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16
30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16
31 H 0.08 1.94 6.48 -2.39 -0.02 1.92 16
32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16
33 H 0.26 0.44 8.06 -2.91 -0.02 0.41 16
34 H 0.41 5.75 7.72 -92.71 -0.72 5.03 16
35 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16
36 H 0.07 1.50 7.88 -2.39 -0.02 1.48 16
37 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16
38 H 0.11 2.22 8.10 -2.39 -0.02 2.20 16
39 H 0.37 15.01 5.76 -92.71 -0.53 14.48 16
40 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16
41 H 0.09 2.18 7.92 -2.39 -0.02 2.16 16
42 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16
Total: -1.00 -75.69 349.59 0.56 -75.13
By element:
Atomic # 1 Polarization: 28.14 SS G_CDS: -1.02 Total: 27.12 kcal
Atomic # 6 Polarization: -6.07 SS G_CDS: 6.91 Total: 0.84 kcal
Atomic # 7 Polarization: -124.77 SS G_CDS: -7.17 Total: -131.94 kcal
Atomic # 8 Polarization: -16.30 SS G_CDS: -0.06 Total: -16.36 kcal
Atomic # 14 Polarization: 43.31 SS G_CDS: 1.90 Total: 45.21 kcal
Total: -75.69 0.56 -75.13 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001086543013.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 95.610 kcal
(2) G-P(sol) polarization free energy of solvation -75.690 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.921 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.559 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.131 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.479 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds