Wall clock time and date at job start Tue Mar 31 2020 03:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35032 * 124.88505 * 2 1 4 4 C 1.35361 * 107.23090 * 179.74699 * 3 2 1 5 5 C 1.41501 * 105.50076 * 0.38048 * 4 3 2 6 6 C 1.47716 * 126.52076 * 179.87578 * 5 4 3 7 7 O 1.21574 * 119.99541 * 359.71213 * 6 5 4 8 8 N 1.34777 * 120.00135 * 179.71522 * 6 5 4 9 9 C 1.46496 * 119.99613 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.46846 * 179.97438 * 9 8 6 11 11 H 1.08999 * 110.02340 * 305.06193 * 10 9 8 12 12 C 1.53876 * 110.03248 * 66.45277 * 10 9 8 13 13 C 1.54271 * 106.60073 * 119.28057 * 12 10 9 14 14 C 1.54892 * 104.19278 * 23.61321 * 13 12 10 15 15 H 1.09002 * 110.75708 * 80.36765 * 14 13 12 16 16 N 1.46496 * 110.75496 * 203.55479 * 14 13 12 17 17 C 1.36939 * 120.00447 * 273.54538 * 16 14 13 18 18 H 1.07998 * 119.99810 * 0.02562 * 17 16 14 19 19 C 1.38811 * 120.00385 * 180.02562 * 17 16 14 20 20 N 1.31622 * 119.99615 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00192 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47173 * 89.99778 * 21 19 17 23 23 H 1.48492 * 109.47440 * 209.99608 * 21 19 17 24 24 H 1.48499 * 109.47298 * 329.99967 * 21 19 17 25 25 C 1.54268 * 110.03535 * 183.61745 * 10 9 8 26 26 N 1.28465 * 124.88171 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.46575 * 269.97436 * 1 2 3 28 28 H 1.08998 * 109.46812 * 29.97475 * 1 2 3 29 29 H 1.08994 * 109.46684 * 149.97841 * 1 2 3 30 30 H 1.08004 * 126.38195 * 0.02562 * 3 2 1 31 31 H 1.07997 * 127.25276 * 180.23112 * 4 3 2 32 32 H 0.96996 * 119.99871 * 359.97438 * 8 6 5 33 33 H 1.09002 * 109.47226 * 299.99334 * 9 8 6 34 34 H 1.08999 * 109.47406 * 59.99933 * 9 8 6 35 35 H 1.08999 * 110.03389 * 238.56990 * 12 10 9 36 36 H 1.09001 * 110.02958 * 0.02562 * 12 10 9 37 37 H 1.09003 * 110.48500 * 142.28683 * 13 12 10 38 38 H 1.08996 * 110.48944 * 264.80159 * 13 12 10 39 39 H 0.97004 * 120.00237 * 93.54764 * 16 14 13 40 40 H 0.97000 * 119.99720 * 180.02562 * 20 19 17 41 41 H 1.09008 * 110.48479 * 335.78701 * 25 10 9 42 42 H 1.09000 * 110.48830 * 98.42437 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2374 1.1077 0.0000 4 6 3.5272 0.6972 0.0057 5 6 3.4741 -0.7168 0.0000 6 6 4.6273 -1.6399 0.0004 7 8 5.7598 -1.1976 0.0008 8 7 4.4241 -2.9722 0.0004 9 6 5.5679 -3.8875 0.0014 10 6 5.0648 -5.3324 0.0017 11 1 4.3860 -5.4911 0.8396 12 6 4.3467 -5.6408 -1.3239 13 6 5.1276 -6.7921 -1.9907 14 6 5.8484 -7.4942 -0.8131 15 1 5.1680 -8.1650 -0.2884 16 7 7.0289 -8.2213 -1.2862 17 6 6.9036 -9.5051 -1.7460 18 1 5.9345 -9.9815 -1.7601 19 6 8.0223 -10.1943 -2.1938 20 7 9.2033 -9.6135 -2.1771 21 14 7.8513 -11.9452 -2.8216 22 1 7.5867 -11.9236 -4.2828 23 1 9.1079 -12.6909 -2.5572 24 1 6.7232 -12.6132 -2.1242 25 6 6.2569 -6.3072 0.0942 26 7 2.1997 -1.0538 0.0005 27 1 -0.3632 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3632 -0.8898 -0.5142 30 1 1.8905 2.1305 0.0004 31 1 4.4109 1.3180 0.0108 32 1 3.5206 -3.3250 0.0004 33 1 6.1733 -3.7135 -0.8882 34 1 6.1720 -3.7133 0.8918 35 1 3.3197 -5.9498 -1.1291 36 1 4.3571 -4.7612 -1.9675 37 1 4.4429 -7.4817 -2.4845 38 1 5.8519 -6.3989 -2.7040 39 1 7.8993 -7.7934 -1.2739 40 1 9.9850 -10.0949 -2.4903 41 1 7.1653 -5.8355 -0.2808 42 1 6.3965 -6.6428 1.1218 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086876004.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:55 Heat of formation + Delta-G solvation = 19.431837 kcal Electronic energy + Delta-G solvation = -22454.686536 eV Core-core repulsion = 19049.240043 eV Total energy + Delta-G solvation = -3405.446493 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.57173 -40.66888 -39.35458 -36.34622 -35.02980 -34.32510 -32.60034 -31.70392 -30.39194 -29.02451 -28.12889 -25.93853 -24.87885 -23.59055 -22.41110 -21.51097 -20.83583 -20.55330 -19.16618 -18.77896 -17.48295 -17.31416 -17.13366 -16.73615 -16.56134 -15.89113 -15.65482 -15.23879 -14.99304 -14.68542 -14.33974 -14.11701 -14.01647 -13.59905 -13.50596 -13.33283 -13.30788 -12.94635 -12.69604 -12.34756 -12.13358 -11.99657 -11.95348 -11.78592 -11.65986 -11.54887 -11.29984 -11.19257 -10.88672 -10.33341 -10.13639 -9.93094 -8.97337 -7.92991 -5.21251 0.52163 1.21515 1.46971 1.49004 1.57349 1.62235 2.19211 2.36034 2.57391 3.36663 3.39247 3.66423 3.75592 3.79571 4.00987 4.06573 4.30007 4.38557 4.44381 4.47785 4.50478 4.62111 4.63871 4.73740 4.77265 4.78181 4.79088 4.80694 4.91152 5.08855 5.11524 5.19271 5.31139 5.36270 5.45750 5.50575 5.54096 5.64349 5.90935 6.29809 6.43440 6.90866 7.15593 7.34805 8.13419 8.35325 9.30833 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.038140 B = 0.002441 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.958907 B =11468.403408 C =11941.478561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.280 5.280 3 C 0.002 3.998 4 C -0.208 4.208 5 C -0.049 4.049 6 C 0.597 3.403 7 O -0.577 6.577 8 N -0.702 5.702 9 C 0.132 3.868 10 C -0.084 4.084 11 H 0.101 0.899 12 C -0.108 4.108 13 C -0.138 4.138 14 C 0.165 3.835 15 H 0.054 0.946 16 N -0.736 5.736 17 C -0.237 4.237 18 H 0.076 0.924 19 C -0.081 4.081 20 N -0.972 5.972 21 Si 0.973 3.027 22 H -0.289 1.289 23 H -0.297 1.297 24 H -0.268 1.268 25 C -0.114 4.114 26 N -0.275 5.275 27 H 0.101 0.899 28 H 0.129 0.871 29 H 0.098 0.902 30 H 0.229 0.771 31 H 0.160 0.840 32 H 0.416 0.584 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.039 0.961 39 H 0.371 0.629 40 H 0.250 0.750 41 H 0.056 0.944 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.255 23.535 6.551 33.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.068 5.068 3 C -0.141 4.141 4 C -0.236 4.236 5 C -0.207 4.207 6 C 0.383 3.617 7 O -0.455 6.455 8 N -0.353 5.353 9 C 0.009 3.991 10 C -0.103 4.103 11 H 0.120 0.880 12 C -0.146 4.146 13 C -0.178 4.178 14 C 0.056 3.944 15 H 0.072 0.928 16 N -0.375 5.375 17 C -0.369 4.369 18 H 0.094 0.906 19 C -0.273 4.273 20 N -0.623 5.623 21 Si 0.802 3.198 22 H -0.216 1.216 23 H -0.223 1.223 24 H -0.192 1.192 25 C -0.153 4.153 26 N -0.114 5.114 27 H 0.120 0.880 28 H 0.148 0.852 29 H 0.117 0.883 30 H 0.245 0.755 31 H 0.178 0.822 32 H 0.253 0.747 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.203 0.797 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -23.395 22.711 6.526 33.253 hybrid contribution 1.103 -0.437 -0.602 1.330 sum -22.293 22.274 5.924 32.065 Atomic orbital electron populations 1.22652 0.70215 1.07350 1.06149 1.45947 1.09431 1.02639 1.48821 1.23477 0.89644 0.95330 1.05653 1.22029 0.99102 0.92890 1.09609 1.21826 0.90782 0.94870 1.13244 1.17263 0.86735 0.82106 0.75635 1.90771 1.24363 1.77913 1.52491 1.45775 1.11175 1.04813 1.73559 1.21442 0.87959 0.88029 1.01698 1.21823 0.97314 0.91694 0.99440 0.88039 1.22133 0.99416 0.97643 0.95414 1.22897 0.98613 0.97382 0.98935 1.21447 0.88387 0.91656 0.92878 0.92809 1.42614 1.06036 1.13093 1.75795 1.19643 0.93841 0.90814 1.32555 0.90583 1.25590 0.95312 1.02666 1.03726 1.69831 0.98811 1.38575 1.55093 0.85136 0.76698 0.79966 0.77972 1.21590 1.22322 1.19241 1.22465 0.97642 0.95230 0.99998 1.73441 1.02530 1.15636 1.19754 0.88040 0.85237 0.88318 0.75491 0.82209 0.74740 0.92734 0.91542 0.89750 0.91872 0.93079 0.94251 0.79693 0.94140 0.92512 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.13 11.31 127.77 1.44 1.57 16 2 N -0.28 -3.44 3.70 -369.44 -1.37 -4.81 16 3 C 0.00 0.02 11.46 83.54 0.96 0.98 16 4 C -0.21 -4.05 10.81 22.41 0.24 -3.81 16 5 C -0.05 -1.19 7.13 42.46 0.30 -0.89 16 6 C 0.60 17.40 7.83 86.75 0.68 18.08 16 7 O -0.58 -21.03 16.93 -3.95 -0.07 -21.10 16 8 N -0.70 -17.30 5.29 -466.10 -2.47 -19.76 16 9 C 0.13 3.51 4.70 86.38 0.41 3.92 16 10 C -0.08 -2.09 2.98 -10.07 -0.03 -2.12 16 11 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 12 C -0.11 -2.80 6.13 31.32 0.19 -2.61 16 13 C -0.14 -4.90 6.51 31.67 0.21 -4.69 16 14 C 0.16 6.54 3.53 46.28 0.16 6.71 16 15 H 0.05 2.13 8.12 -2.39 -0.02 2.11 16 16 N -0.74 -38.19 5.26 -316.86 -1.67 -39.86 16 17 C -0.24 -13.40 9.98 84.03 0.84 -12.56 16 18 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 19 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 20 N -0.97 -61.14 13.06 21.65 0.28 -60.86 16 21 Si 0.97 47.07 29.55 68.60 2.03 49.10 16 22 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 23 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 C -0.11 -3.71 5.97 31.67 0.19 -3.52 16 26 N -0.28 -5.49 11.67 -48.17 -0.56 -6.05 16 27 H 0.10 -0.09 8.14 -2.38 -0.02 -0.11 16 28 H 0.13 -0.61 8.13 -2.39 -0.02 -0.63 16 29 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.23 0.18 8.06 -2.91 -0.02 0.16 16 31 H 0.16 3.01 8.06 -2.91 -0.02 2.98 16 32 H 0.42 8.48 8.03 -92.71 -0.74 7.74 16 33 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 1.62 7.58 -2.39 -0.02 1.60 16 37 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.37 20.83 7.73 -92.71 -0.72 20.12 16 40 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 41 H 0.06 2.00 7.74 -2.38 -0.02 1.98 16 42 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -79.06 353.47 1.81 -77.25 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: -0.43 Total: 29.32 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 6.06 Total: -3.23 kcal Atomic # 7 Polarization: -125.57 SS G_CDS: -5.78 Total: -131.35 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.07 Total: -21.10 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -79.06 1.81 -77.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086876004.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.685 kcal (2) G-P(sol) polarization free energy of solvation -79.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds