Wall clock time and date at job start Tue Mar 31 2020 03:03:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53006 * 109.46853 * 2 1
4 4 H 1.08994 * 109.87624 * 305.44163 * 3 2 1
5 5 C 1.54433 * 110.00833 * 184.35090 * 3 2 1
6 6 H 1.09000 * 110.72018 * 336.66164 * 5 3 2
7 7 N 1.46494 * 110.76045 * 99.96531 * 5 3 2
8 8 C 1.34784 * 120.00029 * 199.94479 * 7 5 3
9 9 O 1.21281 * 119.99499 * 0.02562 * 8 7 5
10 10 C 1.50696 * 119.99963 * 180.02562 * 8 7 5
11 11 N 1.46498 * 109.46904 * 180.02562 * 10 8 7
12 12 C 1.36893 * 126.39337 * 269.70978 * 11 10 8
13 13 C 1.34674 * 106.81191 * 179.84534 * 12 11 10
14 14 N 1.34125 * 108.02330 * 0.41812 * 13 12 11
15 15 C 1.30497 * 109.25821 * 359.73820 * 14 13 12
16 16 C 1.55152 * 102.89631 * 218.32619 * 5 3 2
17 17 C 1.54910 * 101.61690 * 35.49302 * 16 5 3
18 18 N 1.47018 * 109.88134 * 66.45800 * 3 2 1
19 19 C 1.36937 * 125.64908 * 298.54749 * 18 3 2
20 20 H 1.08002 * 119.99928 * 334.95680 * 19 18 3
21 21 C 1.38812 * 120.00294 * 154.95651 * 19 18 3
22 22 N 1.31620 * 120.00003 * 159.51320 * 21 19 18
23 23 Si 1.86794 * 119.99958 * 339.52006 * 21 19 18
24 24 H 1.48495 * 109.47363 * 84.71952 * 23 21 19
25 25 H 1.48503 * 109.46970 * 204.71919 * 23 21 19
26 26 H 1.48499 * 109.46987 * 324.71627 * 23 21 19
27 27 H 1.09004 * 109.47018 * 292.23903 * 1 2 3
28 28 H 1.08995 * 109.47406 * 52.24270 * 1 2 3
29 29 H 1.08997 * 109.47008 * 172.24589 * 1 2 3
30 30 H 1.09003 * 109.46975 * 240.00722 * 2 1 3
31 31 H 1.09002 * 109.47599 * 120.00297 * 2 1 3
32 32 H 0.96996 * 120.00099 * 19.94424 * 7 5 3
33 33 H 1.08997 * 109.47049 * 299.99484 * 10 8 7
34 34 H 1.09003 * 109.47267 * 59.99649 * 10 8 7
35 35 H 1.07998 * 126.59100 * 359.97438 * 12 11 10
36 36 H 1.08003 * 125.98693 * 180.12172 * 13 12 11
37 37 H 1.08000 * 125.65183 * 180.02562 * 15 14 13
38 38 H 1.09009 * 111.00142 * 277.40728 * 16 5 3
39 39 H 1.09001 * 111.00971 * 153.59289 * 16 5 3
40 40 H 1.09003 * 110.36252 * 81.81684 * 17 16 5
41 41 H 1.09000 * 110.36576 * 204.02197 * 17 16 5
42 42 H 0.97004 * 120.00168 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.6030 1.9901 -0.8351
5 6 3.5802 1.4585 -0.1101
6 1 4.0017 0.5166 0.2408
7 7 3.9996 1.7350 -1.4862
8 6 5.2423 1.4055 -1.8911
9 8 6.0130 0.8797 -1.1162
10 6 5.6739 1.6904 -3.3065
11 7 7.0555 1.2415 -3.4954
12 6 8.1863 1.9865 -3.2945
13 6 9.2337 1.1896 -3.5800
14 7 8.7554 -0.0063 -3.9540
15 6 7.4515 0.0174 -3.9059
16 6 3.9826 2.6244 0.8312
17 6 2.9268 2.4947 1.9574
18 7 1.6859 2.0980 1.2675
19 6 0.4140 2.3051 1.7309
20 1 -0.4109 2.3641 1.0363
21 6 0.1850 2.4390 3.0934
22 7 -0.9137 3.0237 3.5217
23 14 1.4361 1.7897 4.3191
24 1 2.4932 2.8100 4.5350
25 1 0.7600 1.4970 5.6085
26 1 2.0495 0.5459 3.7883
27 1 -0.3633 0.3890 0.9513
28 1 -0.3634 0.6292 -0.8124
29 1 -0.3633 -1.0182 -0.1387
30 1 1.8933 -0.5137 -0.8901
31 1 1.8934 -0.5139 0.8899
32 1 3.3830 2.1551 -2.1060
33 1 5.0216 1.1586 -3.9993
34 1 5.6101 2.7617 -3.4972
35 1 8.2299 3.0150 -2.9677
36 1 10.2760 1.4666 -3.5228
37 1 6.7974 -0.8057 -4.1529
38 1 3.8955 3.5848 0.3229
39 1 4.9901 2.4814 1.2218
40 1 3.2260 1.7271 2.6712
41 1 2.7926 3.4507 2.4635
42 1 -1.0740 3.1170 4.4738
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001087847381.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:03:29
Heat of formation + Delta-G solvation = 59.572348 kcal
Electronic energy + Delta-G solvation = -23706.274003 eV
Core-core repulsion = 20302.568134 eV
Total energy + Delta-G solvation = -3403.705870 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-42.21211 -39.97707 -38.15513 -34.42449 -34.15691 -32.62661 -32.21709 -29.86559
-29.52606 -28.10865 -26.93365 -24.34753 -22.28186 -21.93323 -21.49003 -20.94165
-20.54052 -19.58348 -17.77008 -17.55869 -17.04230 -16.11504 -15.58672 -15.21250
-14.94392 -14.66151 -14.26942 -14.01716 -13.70581 -13.63362 -13.35306 -13.27541
-13.03741 -12.64037 -12.54765 -12.26777 -11.97125 -11.52487 -11.19646 -10.98905
-10.75958 -10.54198 -10.45414 -10.39678 -10.16809 -10.13258 -9.97367 -9.61441
-9.43177 -9.04462 -8.67658 -8.63332 -7.10578 -6.04309 -3.39049 1.81368
2.31944 2.42347 3.04579 3.13403 3.30198 3.44142 3.46527 4.29291
4.36148 4.47462 4.57802 4.58845 4.68655 4.84446 5.02118 5.09831
5.20386 5.29272 5.47721 5.53881 5.69441 5.77519 5.82633 5.98143
6.04021 6.05284 6.17794 6.27280 6.42818 6.51713 6.53237 6.57655
6.62995 6.65237 6.90856 6.95743 7.24789 7.32423 7.67267 7.93399
7.98750 8.22759 8.73237 9.58492 10.08065 11.11026
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.030224 B = 0.003577 C = 0.003397
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 926.197228 B = 7826.801089 C = 8240.684353
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.125 4.125
3 C 0.159 3.841
4 H 0.046 0.954
5 C 0.134 3.866
6 H 0.095 0.905
7 N -0.710 5.710
8 C 0.493 3.507
9 O -0.521 6.521
10 C 0.086 3.914
11 N -0.445 5.445
12 C -0.046 4.046
13 C -0.031 4.031
14 N -0.496 5.496
15 C 0.193 3.807
16 C -0.140 4.140
17 C 0.115 3.885
18 N -0.598 5.598
19 C -0.237 4.237
20 H 0.095 0.905
21 C 0.027 3.973
22 N -0.906 5.906
23 Si 0.880 3.120
24 H -0.285 1.285
25 H -0.302 1.302
26 H -0.275 1.275
27 H 0.094 0.906
28 H 0.041 0.959
29 H 0.032 0.968
30 H 0.042 0.958
31 H 0.057 0.943
32 H 0.402 0.598
33 H 0.124 0.876
34 H 0.122 0.878
35 H 0.172 0.828
36 H 0.168 0.832
37 H 0.202 0.798
38 H 0.072 0.928
39 H 0.068 0.932
40 H 0.026 0.974
41 H 0.062 0.938
42 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.244 -0.869 -15.335 19.035
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.165 4.165
3 C 0.052 3.948
4 H 0.064 0.936
5 C 0.030 3.970
6 H 0.113 0.887
7 N -0.362 5.362
8 C 0.276 3.724
9 O -0.396 6.396
10 C -0.041 4.041
11 N -0.128 5.128
12 C -0.178 4.178
13 C -0.178 4.178
14 N -0.214 5.214
15 C -0.090 4.090
16 C -0.179 4.179
17 C -0.011 4.011
18 N -0.324 5.324
19 C -0.364 4.364
20 H 0.112 0.888
21 C -0.172 4.172
22 N -0.549 5.549
23 Si 0.710 3.290
24 H -0.212 1.212
25 H -0.230 1.230
26 H -0.200 1.200
27 H 0.112 0.888
28 H 0.060 0.940
29 H 0.051 0.949
30 H 0.061 0.939
31 H 0.075 0.925
32 H 0.237 0.763
33 H 0.142 0.858
34 H 0.140 0.860
35 H 0.189 0.811
36 H 0.186 0.814
37 H 0.219 0.781
38 H 0.090 0.910
39 H 0.087 0.913
40 H 0.043 0.957
41 H 0.080 0.920
42 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 11.945 -1.809 -14.799 19.104
hybrid contribution -0.242 0.534 0.917 1.088
sum 11.703 -1.275 -13.882 18.202
Atomic orbital electron populations
1.21929 0.95210 0.99302 1.04557 1.21910 0.97395 0.97187 0.99980
1.21214 0.89584 0.92673 0.91374 0.93602 1.22165 0.95858 0.99176
0.79833 0.88685 1.45973 1.13821 1.62301 1.14090 1.20670 0.82626
0.79503 0.89574 1.90803 1.52132 1.41792 1.54908 1.21707 0.82133
1.03983 0.96318 1.44998 1.05767 1.12199 1.49833 1.22684 0.85621
0.99563 1.09951 1.22244 0.99070 0.90260 1.06239 1.70278 1.07443
1.22898 1.20768 1.24948 0.92666 0.88190 1.03165 1.23124 0.99092
0.98135 0.97573 1.21928 0.86329 0.98783 0.94018 1.44757 1.01871
1.65896 1.19915 1.18537 0.82804 1.43816 0.91266 0.88785 1.25136
0.96086 0.99231 0.96756 1.69805 1.27056 1.43270 1.14729 0.86976
0.80917 0.80217 0.80892 1.21185 1.22959 1.20047 0.88773 0.93957
0.94927 0.93914 0.92454 0.76347 0.85785 0.85989 0.81079 0.81435
0.78123 0.90968 0.91336 0.95670 0.92028 0.92571
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.71 9.01 37.15 0.33 -2.38 16
2 C -0.13 -2.13 5.47 -26.73 -0.15 -2.27 16
3 C 0.16 2.74 2.99 -66.89 -0.20 2.54 16
4 H 0.05 0.75 7.69 -51.93 -0.40 0.35 16
5 C 0.13 2.03 2.76 -66.04 -0.18 1.85 16
6 H 0.10 1.61 7.42 -51.93 -0.39 1.23 16
7 N -0.71 -7.68 5.21 -51.98 -0.27 -7.95 16
8 C 0.49 5.52 7.90 -10.98 -0.09 5.43 16
9 O -0.52 -8.50 16.16 5.56 0.09 -8.41 16
10 C 0.09 0.58 6.63 -5.20 -0.03 0.55 16
11 N -0.44 -4.42 2.24 -119.87 -0.27 -4.68 16
12 C -0.05 -0.47 11.58 -16.55 -0.19 -0.66 16
13 C -0.03 -0.36 11.87 -17.81 -0.21 -0.57 16
14 N -0.50 -6.66 11.25 -14.66 -0.16 -6.82 16
15 C 0.19 2.14 12.56 -90.37 -1.14 1.00 16
16 C -0.14 -2.29 6.76 -24.58 -0.17 -2.45 16
17 C 0.11 2.37 4.75 -2.53 -0.01 2.35 16
18 N -0.60 -13.07 2.85 -162.51 -0.46 -13.53 16
19 C -0.24 -6.10 7.87 -15.06 -0.12 -6.22 16
20 H 0.09 2.56 7.25 -52.49 -0.38 2.18 16
21 C 0.03 0.75 5.44 -17.43 -0.09 0.66 16
22 N -0.91 -26.62 13.97 55.49 0.78 -25.85 16
23 Si 0.88 21.90 24.35 -169.99 -4.14 17.76 16
24 H -0.28 -6.91 6.72 56.52 0.38 -6.53 16
25 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16
26 H -0.27 -6.80 6.79 56.52 0.38 -6.42 16
27 H 0.09 2.03 5.46 -51.93 -0.28 1.74 16
28 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16
29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16
30 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16
31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16
32 H 0.40 3.12 8.32 -40.82 -0.34 2.79 16
33 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16
34 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16
35 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16
36 H 0.17 1.54 8.06 -52.48 -0.42 1.11 16
37 H 0.20 1.58 8.06 -52.49 -0.42 1.16 16
38 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16
39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
40 H 0.03 0.56 5.44 -51.93 -0.28 0.28 16
41 H 0.06 1.35 7.28 -51.93 -0.38 0.97 16
42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16
LS Contribution 338.72 15.07 5.10 5.10
Total: -1.00 -34.46 338.72 -7.86 -42.32
By element:
Atomic # 1 Polarization: 8.51 SS G_CDS: -6.27 Total: 2.24 kcal
Atomic # 6 Polarization: 2.07 SS G_CDS: -2.25 Total: -0.18 kcal
Atomic # 7 Polarization: -58.44 SS G_CDS: -0.39 Total: -58.83 kcal
Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.41 kcal
Atomic # 14 Polarization: 21.90 SS G_CDS: -4.14 Total: 17.76 kcal
Total LS contribution 5.10 Total: 5.10 kcal
Total: -34.46 -7.86 -42.32 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001087847381.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.893 kcal
(2) G-P(sol) polarization free energy of solvation -34.464 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.429 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.320 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.572 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds