Wall clock time and date at job start Tue Mar 31 2020 03:03:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53006 * 109.46853 * 2 1
4 4 H 1.08994 * 109.87624 * 305.44163 * 3 2 1
5 5 C 1.54433 * 110.00833 * 184.35090 * 3 2 1
6 6 H 1.09000 * 110.72018 * 336.66164 * 5 3 2
7 7 N 1.46494 * 110.76045 * 99.96531 * 5 3 2
8 8 C 1.34784 * 120.00029 * 199.94479 * 7 5 3
9 9 O 1.21281 * 119.99499 * 0.02562 * 8 7 5
10 10 C 1.50696 * 119.99963 * 180.02562 * 8 7 5
11 11 N 1.46498 * 109.46904 * 180.02562 * 10 8 7
12 12 C 1.36893 * 126.39337 * 269.70978 * 11 10 8
13 13 C 1.34674 * 106.81191 * 179.84534 * 12 11 10
14 14 N 1.34125 * 108.02330 * 0.41812 * 13 12 11
15 15 C 1.30497 * 109.25821 * 359.73820 * 14 13 12
16 16 C 1.55152 * 102.89631 * 218.32619 * 5 3 2
17 17 C 1.54910 * 101.61690 * 35.49302 * 16 5 3
18 18 N 1.47018 * 109.88134 * 66.45800 * 3 2 1
19 19 C 1.36937 * 125.64908 * 298.54749 * 18 3 2
20 20 H 1.08002 * 119.99928 * 334.95680 * 19 18 3
21 21 C 1.38812 * 120.00294 * 154.95651 * 19 18 3
22 22 N 1.31620 * 120.00003 * 159.51320 * 21 19 18
23 23 Si 1.86794 * 119.99958 * 339.52006 * 21 19 18
24 24 H 1.48495 * 109.47363 * 84.71952 * 23 21 19
25 25 H 1.48503 * 109.46970 * 204.71919 * 23 21 19
26 26 H 1.48499 * 109.46987 * 324.71627 * 23 21 19
27 27 H 1.09004 * 109.47018 * 292.23903 * 1 2 3
28 28 H 1.08995 * 109.47406 * 52.24270 * 1 2 3
29 29 H 1.08997 * 109.47008 * 172.24589 * 1 2 3
30 30 H 1.09003 * 109.46975 * 240.00722 * 2 1 3
31 31 H 1.09002 * 109.47599 * 120.00297 * 2 1 3
32 32 H 0.96996 * 120.00099 * 19.94424 * 7 5 3
33 33 H 1.08997 * 109.47049 * 299.99484 * 10 8 7
34 34 H 1.09003 * 109.47267 * 59.99649 * 10 8 7
35 35 H 1.07998 * 126.59100 * 359.97438 * 12 11 10
36 36 H 1.08003 * 125.98693 * 180.12172 * 13 12 11
37 37 H 1.08000 * 125.65183 * 180.02562 * 15 14 13
38 38 H 1.09009 * 111.00142 * 277.40728 * 16 5 3
39 39 H 1.09001 * 111.00971 * 153.59289 * 16 5 3
40 40 H 1.09003 * 110.36252 * 81.81684 * 17 16 5
41 41 H 1.09000 * 110.36576 * 204.02197 * 17 16 5
42 42 H 0.97004 * 120.00168 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.6030 1.9901 -0.8351
5 6 3.5802 1.4585 -0.1101
6 1 4.0017 0.5166 0.2408
7 7 3.9996 1.7350 -1.4862
8 6 5.2423 1.4055 -1.8911
9 8 6.0130 0.8797 -1.1162
10 6 5.6739 1.6904 -3.3065
11 7 7.0555 1.2415 -3.4954
12 6 8.1863 1.9865 -3.2945
13 6 9.2337 1.1896 -3.5800
14 7 8.7554 -0.0063 -3.9540
15 6 7.4515 0.0174 -3.9059
16 6 3.9826 2.6244 0.8312
17 6 2.9268 2.4947 1.9574
18 7 1.6859 2.0980 1.2675
19 6 0.4140 2.3051 1.7309
20 1 -0.4109 2.3641 1.0363
21 6 0.1850 2.4390 3.0934
22 7 -0.9137 3.0237 3.5217
23 14 1.4361 1.7897 4.3191
24 1 2.4932 2.8100 4.5350
25 1 0.7600 1.4970 5.6085
26 1 2.0495 0.5459 3.7883
27 1 -0.3633 0.3890 0.9513
28 1 -0.3634 0.6292 -0.8124
29 1 -0.3633 -1.0182 -0.1387
30 1 1.8933 -0.5137 -0.8901
31 1 1.8934 -0.5139 0.8899
32 1 3.3830 2.1551 -2.1060
33 1 5.0216 1.1586 -3.9993
34 1 5.6101 2.7617 -3.4972
35 1 8.2299 3.0150 -2.9677
36 1 10.2760 1.4666 -3.5228
37 1 6.7974 -0.8057 -4.1529
38 1 3.8955 3.5848 0.3229
39 1 4.9901 2.4814 1.2218
40 1 3.2260 1.7271 2.6712
41 1 2.7926 3.4507 2.4635
42 1 -1.0740 3.1170 4.4738
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001087847381.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:03:28
Heat of formation + Delta-G solvation = 35.778411 kcal
Electronic energy + Delta-G solvation = -23707.305786 eV
Core-core repulsion = 20302.568134 eV
Total energy + Delta-G solvation = -3404.737652 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-42.95214 -41.05663 -39.50148 -35.71227 -34.91302 -34.19781 -33.89775 -31.33695
-30.37397 -29.18095 -28.16431 -26.01195 -23.88644 -22.99431 -22.25181 -21.92760
-21.63076 -20.94982 -18.93718 -18.59332 -18.35373 -17.39467 -16.99442 -16.40364
-16.06600 -15.79813 -15.34542 -15.08881 -14.85681 -14.81789 -14.69520 -14.46167
-14.08395 -14.04154 -13.85196 -13.66144 -13.20187 -13.05801 -12.96772 -12.63571
-12.37047 -12.07405 -12.01749 -11.71413 -11.56751 -11.43796 -11.27900 -10.94859
-10.70525 -10.44906 -10.10423 -9.39557 -8.97858 -8.15636 -5.43758 1.05302
1.28440 1.38082 1.44211 1.49925 1.75415 2.23081 2.30747 2.41728
3.07107 3.28252 3.62344 3.69427 3.72306 3.89310 3.91255 4.06018
4.10820 4.21811 4.24082 4.39983 4.45458 4.58553 4.61516 4.65859
4.80734 4.83791 4.89647 4.99174 5.06840 5.12416 5.19580 5.31685
5.35239 5.56633 5.68941 5.81105 5.84745 6.16316 6.23370 6.52144
6.78780 7.16262 7.18462 7.56122 8.13563 9.03975
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.030224 B = 0.003577 C = 0.003397
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 926.197228 B = 7826.801089 C = 8240.684353
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.122 4.122
3 C 0.156 3.844
4 H 0.068 0.932
5 C 0.150 3.850
6 H 0.079 0.921
7 N -0.695 5.695
8 C 0.496 3.504
9 O -0.576 6.576
10 C 0.092 3.908
11 N -0.447 5.447
12 C -0.044 4.044
13 C -0.062 4.062
14 N -0.540 5.540
15 C 0.183 3.817
16 C -0.126 4.126
17 C 0.108 3.892
18 N -0.614 5.614
19 C -0.202 4.202
20 H 0.076 0.924
21 C -0.029 4.029
22 N -0.954 5.954
23 Si 0.927 3.073
24 H -0.278 1.278
25 H -0.313 1.313
26 H -0.276 1.276
27 H 0.049 0.951
28 H 0.053 0.947
29 H 0.050 0.950
30 H 0.079 0.921
31 H 0.034 0.966
32 H 0.421 0.579
33 H 0.166 0.834
34 H 0.160 0.840
35 H 0.197 0.803
36 H 0.178 0.822
37 H 0.226 0.774
38 H 0.089 0.911
39 H 0.072 0.928
40 H 0.011 0.989
41 H 0.044 0.956
42 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.213 -0.671 -18.198 21.927
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.161 4.161
3 C 0.050 3.950
4 H 0.085 0.915
5 C 0.044 3.956
6 H 0.097 0.903
7 N -0.348 5.348
8 C 0.282 3.718
9 O -0.454 6.454
10 C -0.033 4.033
11 N -0.129 5.129
12 C -0.177 4.177
13 C -0.208 4.208
14 N -0.259 5.259
15 C -0.099 4.099
16 C -0.165 4.165
17 C -0.018 4.018
18 N -0.340 5.340
19 C -0.331 4.331
20 H 0.094 0.906
21 C -0.224 4.224
22 N -0.601 5.601
23 Si 0.758 3.242
24 H -0.204 1.204
25 H -0.242 1.242
26 H -0.202 1.202
27 H 0.068 0.932
28 H 0.072 0.928
29 H 0.069 0.931
30 H 0.097 0.903
31 H 0.053 0.947
32 H 0.260 0.740
33 H 0.183 0.817
34 H 0.177 0.823
35 H 0.214 0.786
36 H 0.195 0.805
37 H 0.243 0.757
38 H 0.108 0.892
39 H 0.091 0.909
40 H 0.029 0.971
41 H 0.062 0.938
42 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 12.934 -1.605 -17.726 22.002
hybrid contribution -0.529 0.441 1.685 1.820
sum 12.405 -1.164 -16.041 20.311
Atomic orbital electron populations
1.21816 0.95878 1.00447 1.02399 1.21867 0.96654 0.96962 1.00619
1.21395 0.91389 0.92711 0.89456 0.91485 1.21685 0.93853 0.97934
0.82112 0.90320 1.45701 1.14446 1.62235 1.12467 1.21412 0.81637
0.77812 0.90901 1.90804 1.53566 1.44181 1.56861 1.22015 0.80949
1.06842 0.93537 1.45179 1.06878 1.11747 1.49115 1.23119 0.85470
1.00459 1.08666 1.22619 1.00354 0.90425 1.07368 1.70221 1.09124
1.24177 1.22362 1.25465 0.92489 0.89285 1.02689 1.23008 0.97635
0.99590 0.96279 1.21941 0.87179 0.97299 0.95353 1.44875 1.01009
1.66839 1.21291 1.18479 0.84000 1.40005 0.90569 0.90635 1.25581
0.97437 1.00992 0.98374 1.69901 1.29257 1.46445 1.14527 0.86199
0.79337 0.79759 0.78944 1.20411 1.24166 1.20199 0.93216 0.92798
0.93054 0.90251 0.94746 0.74003 0.81680 0.82269 0.78564 0.80494
0.75729 0.89216 0.90891 0.97133 0.93771 0.93109
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.01 9.01 71.98 0.65 -4.36 16
2 C -0.12 -3.83 5.47 30.59 0.17 -3.66 16
3 C 0.16 4.97 2.99 45.38 0.14 5.10 16
4 H 0.07 1.91 7.69 -2.39 -0.02 1.89 16
5 C 0.15 4.08 2.76 46.22 0.13 4.21 16
6 H 0.08 2.48 7.42 -2.39 -0.02 2.46 16
7 N -0.70 -11.75 5.21 -436.75 -2.27 -14.03 16
8 C 0.50 8.96 7.90 87.65 0.69 9.65 16
9 O -0.58 -17.21 16.16 -3.03 -0.05 -17.26 16
10 C 0.09 0.74 6.63 85.63 0.57 1.31 16
11 N -0.45 -7.25 2.24 -533.14 -1.19 -8.45 16
12 C -0.04 -0.79 11.58 83.09 0.96 0.17 16
13 C -0.06 -1.36 11.87 83.53 0.99 -0.37 16
14 N -0.54 -13.97 11.25 -200.31 -2.25 -16.22 16
15 C 0.18 3.63 12.56 180.26 2.26 5.89 16
16 C -0.13 -3.79 6.76 31.98 0.22 -3.58 16
17 C 0.11 4.33 4.75 86.86 0.41 4.75 16
18 N -0.61 -26.24 2.85 -668.06 -1.91 -28.14 16
19 C -0.20 -10.46 7.87 84.03 0.66 -9.80 16
20 H 0.08 4.17 7.25 -2.91 -0.02 4.15 16
21 C -0.03 -1.64 5.44 84.86 0.46 -1.18 16
22 N -0.95 -57.98 13.97 21.65 0.30 -57.67 16
23 Si 0.93 46.45 24.35 68.60 1.67 48.12 16
24 H -0.28 -13.35 6.72 99.48 0.67 -12.69 16
25 H -0.31 -16.09 7.11 99.48 0.71 -15.38 16
26 H -0.28 -13.65 6.79 99.48 0.68 -12.98 16
27 H 0.05 2.13 5.46 -2.39 -0.01 2.12 16
28 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16
29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16
30 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16
31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16
32 H 0.42 4.06 8.32 -92.71 -0.77 3.29 16
33 H 0.17 0.08 8.14 -2.39 -0.02 0.06 16
34 H 0.16 0.22 8.14 -2.39 -0.02 0.20 16
35 H 0.20 2.27 8.06 -2.91 -0.02 2.24 16
36 H 0.18 3.18 8.06 -2.91 -0.02 3.15 16
37 H 0.23 2.89 8.06 -2.91 -0.02 2.86 16
38 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16
39 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16
40 H 0.01 0.48 5.44 -2.39 -0.01 0.46 16
41 H 0.04 1.92 7.28 -2.39 -0.02 1.90 16
42 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16
Total: -1.00 -79.24 338.72 2.79 -76.45
By element:
Atomic # 1 Polarization: 8.88 SS G_CDS: 0.18 Total: 9.07 kcal
Atomic # 6 Polarization: -0.17 SS G_CDS: 8.31 Total: 8.14 kcal
Atomic # 7 Polarization: -117.19 SS G_CDS: -7.32 Total: -124.51 kcal
Atomic # 8 Polarization: -17.21 SS G_CDS: -0.05 Total: -17.26 kcal
Atomic # 14 Polarization: 46.45 SS G_CDS: 1.67 Total: 48.12 kcal
Total: -79.24 2.79 -76.45 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001087847381.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 112.231 kcal
(2) G-P(sol) polarization free energy of solvation -79.242 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.989 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.452 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.778 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds