Wall clock time and date at job start Tue Mar 31 2020 02:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39675 * 127.32088 * 2 1 4 4 N 1.30862 * 107.86056 * 180.02562 * 3 2 1 5 5 N 1.28438 * 110.93006 * 0.02562 * 4 3 2 6 6 C 1.46504 * 125.19052 * 180.02562 * 5 4 3 7 7 C 1.36599 * 109.62016 * 359.97438 * 5 4 3 8 8 C 1.47158 * 126.88536 * 179.97438 * 7 5 4 9 9 O 1.21635 * 120.00189 * 267.19594 * 8 7 5 10 10 N 1.34777 * 120.00297 * 87.19963 * 8 7 5 11 11 C 1.46503 * 120.00237 * 185.29944 * 10 8 7 12 12 H 1.08994 * 110.64039 * 323.31091 * 11 10 8 13 13 C 1.55156 * 110.71808 * 86.45473 * 11 10 8 14 14 C 1.54913 * 101.57987 * 153.86328 * 13 11 10 15 15 N 1.47419 * 104.83101 * 322.98945 * 14 13 11 16 16 C 1.36941 * 125.64801 * 204.16241 * 15 14 13 17 17 H 1.08000 * 120.00168 * 179.97438 * 16 15 14 18 18 C 1.38814 * 119.99638 * 359.97438 * 16 15 14 19 19 N 1.31614 * 120.00149 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99880 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46813 * 90.00321 * 20 18 16 22 22 H 1.48491 * 109.47005 * 210.00132 * 20 18 16 23 23 H 1.48500 * 109.46879 * 330.00457 * 20 18 16 24 24 C 1.47020 * 108.70750 * 24.12968 * 15 14 13 25 25 H 1.08994 * 109.88214 * 239.52394 * 24 15 14 26 26 C 1.53000 * 109.88497 * 118.35757 * 24 15 14 27 27 H 1.09004 * 109.47115 * 269.97329 * 1 2 3 28 28 H 1.09005 * 109.47186 * 29.97366 * 1 2 3 29 29 H 1.09003 * 109.47350 * 149.97429 * 1 2 3 30 30 H 1.07997 * 126.06896 * 0.03509 * 3 2 1 31 31 H 1.09003 * 109.47023 * 85.22428 * 6 5 4 32 32 H 1.09003 * 109.46955 * 205.22411 * 6 5 4 33 33 H 1.08995 * 109.47240 * 325.22242 * 6 5 4 34 34 H 0.97006 * 119.99365 * 5.30309 * 10 8 7 35 35 H 1.09003 * 111.00445 * 271.93575 * 13 11 10 36 36 H 1.08998 * 111.00505 * 35.75196 * 13 11 10 37 37 H 1.08997 * 110.36218 * 81.82504 * 14 13 11 38 38 H 1.09002 * 110.36615 * 204.14575 * 14 13 11 39 39 H 0.97002 * 120.00086 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.47068 * 302.18940 * 26 24 15 41 41 H 1.08996 * 109.47171 * 62.19012 * 26 24 15 42 42 H 1.09001 * 109.46954 * 182.19638 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1108 0.0000 4 7 3.5876 0.6748 -0.0006 5 7 3.6206 -0.6092 -0.0015 6 6 4.8391 -1.4225 -0.0017 7 6 2.3461 -1.1007 -0.0010 8 6 1.9455 -2.5167 -0.0022 9 8 1.7295 -3.0868 -1.0547 10 7 1.8179 -3.1820 1.1630 11 6 1.5331 -4.6191 1.1586 12 1 0.8583 -4.8745 0.3417 13 6 2.8470 -5.4387 1.0621 14 6 2.4333 -6.7700 1.7375 15 7 1.5351 -6.3723 2.8368 16 6 1.2895 -7.1008 3.9700 17 1 0.6120 -6.7205 4.7202 18 6 1.9114 -8.3281 4.1545 19 7 2.7375 -8.7912 3.2405 20 14 1.5771 -9.3215 5.7007 21 1 0.4197 -10.2228 5.4693 22 1 2.7753 -10.1312 6.0376 23 1 1.2702 -8.4003 6.8242 24 6 0.9472 -5.0637 2.5153 25 1 1.2090 -4.3400 3.2872 26 6 -0.5740 -5.1884 2.4094 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3634 0.8903 -0.5134 29 1 -0.3634 -0.8898 -0.5142 30 1 2.0451 2.1457 0.0005 31 1 5.1886 -1.5537 1.0224 32 1 4.6253 -2.3971 -0.4404 33 1 5.6100 -0.9217 -0.5873 34 1 1.9145 -2.7092 2.0045 35 1 3.1314 -5.6000 0.0223 36 1 3.6517 -4.9533 1.6143 37 1 1.9055 -7.4073 1.0281 38 1 3.3101 -7.2842 2.1312 39 1 3.1717 -9.6490 3.3692 40 1 -0.8258 -5.9279 1.6491 41 1 -0.9806 -5.5027 3.3706 42 1 -0.9993 -4.2237 2.1327 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088802472.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:41 Heat of formation + Delta-G solvation = 68.913797 kcal Electronic energy + Delta-G solvation = -23889.440575 eV Core-core repulsion = 20486.139781 eV Total energy + Delta-G solvation = -3403.300794 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.61211 -39.58211 -37.58129 -34.14769 -34.12294 -32.35145 -31.70114 -30.45642 -29.00041 -28.21551 -26.29684 -25.05172 -24.07087 -22.62744 -21.06996 -20.35801 -20.20554 -19.43883 -17.79170 -16.91516 -16.52297 -15.91321 -15.72264 -14.82763 -14.72070 -14.41247 -14.03535 -13.70856 -13.53217 -13.45011 -13.25294 -12.88395 -12.74512 -12.61272 -12.27641 -12.20061 -12.07912 -11.64070 -11.21240 -10.91991 -10.90602 -10.75137 -10.63428 -10.54538 -10.14794 -10.02114 -9.83377 -9.63609 -9.27250 -8.81885 -8.78607 -8.70262 -6.94163 -5.71385 -3.14386 1.57183 2.03226 2.53798 2.73352 3.22909 3.36184 3.41578 3.43136 4.32800 4.42573 4.58927 4.90668 4.91938 4.99979 5.18209 5.19769 5.26134 5.35458 5.43886 5.49758 5.54775 5.58024 5.71820 5.83539 5.96145 6.04570 6.13522 6.22050 6.25918 6.42080 6.43497 6.50990 6.59497 6.61072 6.78878 7.01396 7.42938 7.52137 7.56588 7.78053 7.93602 8.13362 8.28522 9.14621 9.75447 10.38561 11.32085 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026911 B = 0.003714 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.233828 B = 7536.970110 C = 7901.806828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.162 4.162 3 C 0.003 3.997 4 N -0.286 5.286 5 N -0.272 5.272 6 C 0.086 3.914 7 C -0.027 4.027 8 C 0.591 3.409 9 O -0.523 6.523 10 N -0.700 5.700 11 C 0.133 3.867 12 H 0.096 0.904 13 C -0.154 4.154 14 C 0.153 3.847 15 N -0.595 5.595 16 C -0.222 4.222 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.921 5.921 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.156 3.844 25 H 0.037 0.963 26 C -0.156 4.156 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.185 0.815 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.401 0.599 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.016 0.984 38 H 0.110 0.890 39 H 0.253 0.747 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.058 16.545 -5.080 17.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.172 4.172 3 C -0.174 4.174 4 N -0.117 5.117 5 N -0.060 5.060 6 C -0.054 4.054 7 C -0.156 4.156 8 C 0.373 3.627 9 O -0.398 6.398 10 N -0.351 5.351 11 C 0.029 3.971 12 H 0.114 0.886 13 C -0.194 4.194 14 C 0.028 3.972 15 N -0.320 5.320 16 C -0.350 4.350 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.745 3.255 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.048 3.952 25 H 0.054 0.946 26 C -0.215 4.215 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.202 0.798 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.236 0.764 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.034 0.966 38 H 0.128 0.872 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.262 16.135 -5.735 17.170 hybrid contribution -0.911 -0.557 1.143 1.564 sum 0.351 15.578 -4.592 16.245 Atomic orbital electron populations 1.20137 0.88383 1.02900 1.02267 1.20690 0.96890 0.90710 1.08929 1.23419 0.87776 0.99839 1.06403 1.73118 1.24479 0.93297 1.20802 1.45521 1.05545 1.03673 1.51242 1.22216 0.83724 0.94726 1.04776 1.21447 0.86039 0.94966 1.13142 1.16976 0.77969 0.83272 0.84488 1.90850 1.49688 1.67936 1.31296 1.46104 1.70808 1.10340 1.07813 1.22278 0.98244 0.77166 0.99433 0.88636 1.23429 0.95965 0.99476 1.00483 1.21956 0.96680 0.90405 0.88142 1.44479 1.50380 1.17100 1.20038 1.19026 1.22066 0.99037 0.94862 0.90408 1.24781 0.99548 0.97614 0.98511 1.69779 1.32946 1.20240 1.33960 0.86081 0.77220 0.80007 0.82228 1.21592 1.21655 1.20692 1.20974 0.92148 0.89994 0.92074 0.94590 1.22245 0.97585 0.99701 1.02008 0.91186 0.91065 0.91579 0.79848 0.89335 0.88650 0.88394 0.76409 0.91931 0.91978 0.96631 0.87217 0.93649 0.92833 0.92616 0.94221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.28 36.00 0.37 -0.40 16 2 C -0.16 -1.96 6.30 -104.03 -0.65 -2.61 16 3 C 0.00 0.03 12.00 -17.43 -0.21 -0.18 16 4 N -0.29 -3.67 11.90 30.59 0.36 -3.31 16 5 N -0.27 -3.43 3.75 -63.88 -0.24 -3.67 16 6 C 0.09 0.81 11.21 59.85 0.67 1.48 16 7 C -0.03 -0.37 6.71 -82.06 -0.55 -0.92 16 8 C 0.59 8.97 6.77 -12.64 -0.09 8.89 16 9 O -0.52 -9.77 16.80 5.25 0.09 -9.68 16 10 N -0.70 -10.05 5.20 -53.18 -0.28 -10.33 16 11 C 0.13 2.30 2.80 -66.09 -0.19 2.11 16 12 H 0.10 1.78 7.34 -51.93 -0.38 1.40 16 13 C -0.15 -2.86 6.77 -24.58 -0.17 -3.03 16 14 C 0.15 3.58 5.89 -2.53 -0.01 3.57 16 15 N -0.59 -14.28 3.13 -162.57 -0.51 -14.79 16 16 C -0.22 -5.86 9.89 -15.06 -0.15 -6.01 16 17 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 18 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 19 N -0.92 -25.98 10.09 55.49 0.56 -25.42 16 20 Si 0.91 21.43 29.55 -169.99 -5.02 16.41 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C 0.16 3.00 3.48 -66.95 -0.23 2.77 16 25 H 0.04 0.68 7.68 -51.93 -0.40 0.28 16 26 C -0.16 -2.78 9.14 37.16 0.34 -2.44 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 30 H 0.18 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.93 7.66 -51.93 -0.40 0.53 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.40 5.04 8.30 -40.82 -0.34 4.70 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.11 2.88 5.87 -51.93 -0.30 2.58 16 39 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 348.89 15.07 5.26 5.26 Total: -1.00 -31.74 348.89 -7.17 -38.92 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.43 Total: 3.73 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -0.96 Total: 2.88 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.10 Total: -57.52 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.74 -7.17 -38.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088802472.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.832 kcal (2) G-P(sol) polarization free energy of solvation -31.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds