Wall clock time and date at job start Tue Mar 31 2020 03:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47290 * 2 1 4 4 C 1.35031 * 124.88418 * 124.99598 * 3 2 1 5 5 C 1.35367 * 107.22543 * 179.76759 * 4 3 2 6 6 C 1.41494 * 105.50576 * 0.23337 * 5 4 3 7 7 C 1.47709 * 126.52007 * 179.97438 * 6 5 4 8 8 O 1.21576 * 119.99931 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00121 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99818 * 180.02562 * 9 7 6 11 11 H 1.09001 * 110.64357 * 325.69993 * 10 9 7 12 12 C 1.55151 * 110.72006 * 88.84748 * 10 9 7 13 13 C 1.54914 * 101.58356 * 153.86203 * 12 10 9 14 14 N 1.47424 * 104.83204 * 322.98753 * 13 12 10 15 15 C 1.36936 * 125.64863 * 204.16320 * 14 13 12 16 16 H 1.07996 * 119.99580 * 179.97438 * 15 14 13 17 17 C 1.38805 * 119.99762 * 359.97239 * 15 14 13 18 18 N 1.31618 * 120.00392 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99862 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47027 * 60.00598 * 19 17 15 21 21 H 1.48501 * 109.47112 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47083 * 300.00690 * 19 17 15 23 23 C 1.47322 * 108.73648 * 24.28576 * 14 13 12 24 24 H 1.08994 * 109.84946 * 239.38950 * 23 14 13 25 25 C 1.53000 * 110.06529 * 118.12509 * 23 14 13 26 26 N 1.28472 * 124.88401 * 305.18268 * 3 2 1 27 27 H 1.08998 * 109.47405 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46813 * 300.00146 * 1 2 3 29 29 H 1.08995 * 109.47189 * 59.99476 * 1 2 3 30 30 H 1.08991 * 109.47166 * 239.99694 * 2 1 3 31 31 H 1.09006 * 109.47050 * 119.99781 * 2 1 3 32 32 H 1.08002 * 126.38961 * 0.04238 * 4 3 2 33 33 H 1.08008 * 127.24664 * 180.24553 * 5 4 3 34 34 H 0.97003 * 119.99961 * 0.02562 * 9 7 6 35 35 H 1.09005 * 110.99992 * 271.93307 * 12 10 9 36 36 H 1.08995 * 111.00982 * 35.78597 * 12 10 9 37 37 H 1.09008 * 110.36483 * 81.82658 * 13 12 10 38 38 H 1.08993 * 110.36531 * 204.14825 * 13 12 10 39 39 H 0.97001 * 120.00031 * 179.97438 * 18 17 15 40 40 H 1.08992 * 109.46981 * 302.26738 * 25 23 14 41 41 H 1.09001 * 109.46811 * 62.27070 * 25 23 14 42 42 H 1.09003 * 109.47048 * 182.26853 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8748 1.8975 0.9074 5 6 3.0868 3.1907 0.5680 6 6 2.3027 3.4116 -0.5889 7 6 2.1906 4.6744 -1.3469 8 8 2.8110 5.6562 -0.9874 9 7 1.4005 4.7382 -2.4369 10 6 1.2898 5.9906 -3.1890 11 1 1.3516 6.8480 -2.5189 12 6 2.3844 6.0709 -4.2857 13 6 1.7173 7.0084 -5.3229 14 7 0.2906 6.6377 -5.3041 15 6 -0.5981 6.8323 -6.3276 16 1 -1.6270 6.5238 -6.2152 17 6 -0.1765 7.4260 -7.5093 18 7 1.0775 7.8015 -7.6463 19 14 -1.3887 7.6908 -8.9057 20 1 -2.4963 8.5640 -8.4408 21 1 -0.6943 8.3374 -10.0481 22 1 -1.9391 6.3813 -9.3385 23 6 -0.0222 6.0257 -4.0010 24 1 -0.3943 5.0118 -4.1481 25 6 -1.0678 6.8652 -3.2643 26 7 1.6909 2.2764 -0.8614 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 3.3128 1.3749 1.7449 33 1 3.7212 3.9037 1.0737 34 1 0.9052 3.9549 -2.7235 35 1 3.3001 6.5123 -3.8921 36 1 2.5796 5.0886 -4.7157 37 1 1.8424 8.0504 -5.0281 38 1 2.1400 6.8402 -6.3133 39 1 1.3721 8.2161 -8.4723 40 1 -0.6950 7.8817 -3.1391 41 1 -1.9911 6.8854 -3.8433 42 1 -1.2622 6.4263 -2.2856 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088898851.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:56 Heat of formation + Delta-G solvation = 70.262380 kcal Electronic energy + Delta-G solvation = -23378.524676 eV Core-core repulsion = 19975.282361 eV Total energy + Delta-G solvation = -3403.242315 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.74662 -39.33857 -37.38341 -34.80745 -33.92281 -32.01330 -30.81278 -30.35090 -30.12773 -28.50345 -25.57242 -24.14653 -23.90328 -22.26030 -21.49459 -20.26228 -19.93581 -19.41118 -17.82456 -16.75475 -16.64094 -16.13298 -15.70486 -14.84752 -14.65954 -14.35429 -14.00378 -13.91328 -13.73400 -13.52676 -13.04551 -12.78062 -12.65527 -12.51612 -12.06812 -11.91073 -11.79721 -11.50280 -11.08377 -10.95126 -10.80792 -10.78499 -10.46938 -10.37142 -10.08223 -9.78765 -9.67575 -9.50260 -9.37878 -9.16649 -8.62064 -8.49004 -6.82393 -5.60550 -3.03282 1.59454 2.07070 2.25417 3.42671 3.44769 3.48123 3.50071 3.61860 4.07214 4.46954 4.51906 4.58461 4.67023 4.73760 5.08981 5.21259 5.34191 5.39178 5.47686 5.58020 5.62150 5.67905 5.70478 5.71009 5.90448 6.19933 6.30340 6.33264 6.39442 6.43390 6.59944 6.62232 6.69788 6.79975 6.93495 7.19310 7.57888 7.66827 7.68785 7.90413 7.96950 8.39734 8.51234 9.25433 9.86128 10.50773 11.42669 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024262 B = 0.003399 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.802922 B = 8234.825938 C = 8806.912087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.284 5.284 4 C -0.024 4.024 5 C -0.180 4.180 6 C -0.012 4.012 7 C 0.601 3.399 8 O -0.537 6.537 9 N -0.701 5.701 10 C 0.135 3.865 11 H 0.094 0.906 12 C -0.153 4.153 13 C 0.154 3.846 14 N -0.596 5.596 15 C -0.220 4.220 16 H 0.077 0.923 17 C -0.011 4.011 18 N -0.922 5.922 19 Si 0.914 3.086 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.286 1.286 23 C 0.155 3.845 24 H 0.037 0.963 25 C -0.155 4.155 26 N -0.259 5.259 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.180 0.820 33 H 0.161 0.839 34 H 0.403 0.597 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.014 0.986 38 H 0.109 0.891 39 H 0.252 0.748 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 -16.500 17.409 24.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.074 5.074 4 C -0.166 4.166 5 C -0.208 4.208 6 C -0.172 4.172 7 C 0.385 3.615 8 O -0.412 6.412 9 N -0.351 5.351 10 C 0.030 3.970 11 H 0.112 0.888 12 C -0.193 4.193 13 C 0.029 3.971 14 N -0.321 5.321 15 C -0.348 4.348 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.570 5.570 19 Si 0.745 3.255 20 H -0.213 1.213 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.047 3.953 24 H 0.055 0.945 25 C -0.214 4.214 26 N -0.095 5.095 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.197 0.803 33 H 0.179 0.821 34 H 0.238 0.762 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.032 0.968 38 H 0.127 0.873 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.444 -16.306 16.662 23.358 hybrid contribution -0.302 0.054 -0.147 0.341 sum 1.141 -16.252 16.514 23.198 Atomic orbital electron populations 1.22084 0.93043 1.03366 1.04125 1.21992 0.96776 0.76841 1.04650 1.45626 1.32483 1.10317 1.18929 1.22846 0.99564 0.95545 0.98664 1.21790 1.04537 0.96085 0.98391 1.22083 1.02289 0.93300 0.99528 1.16872 0.79530 0.85272 0.79837 1.90782 1.45920 1.35705 1.68824 1.45933 1.46626 1.14959 1.27608 1.22195 0.96755 0.85491 0.92538 0.88827 1.23406 0.97395 1.01406 0.97065 1.21948 0.83285 0.93177 0.98730 1.44560 1.06849 1.70581 1.10099 1.18985 0.91051 1.33257 0.91494 0.90534 1.24778 0.96615 1.01054 0.98171 1.69789 1.14212 1.46756 1.26230 0.86163 0.79880 0.77781 0.81714 1.21256 1.21620 1.21228 1.21047 0.91537 0.95826 0.86915 0.94546 1.22225 1.00225 1.00595 0.98372 1.73484 1.22095 0.98130 1.15763 0.90289 0.91863 0.90525 0.88863 0.88009 0.80291 0.82101 0.76169 0.91889 0.91979 0.96752 0.87337 0.93683 0.92874 0.92747 0.94279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 10.01 37.16 0.37 -0.57 16 2 C 0.12 0.64 7.12 -4.04 -0.03 0.61 16 3 N -0.28 -2.76 3.41 -61.33 -0.21 -2.96 16 4 C -0.02 -0.21 11.40 -17.17 -0.20 -0.41 16 5 C -0.18 -2.18 10.81 -39.37 -0.43 -2.61 16 6 C -0.01 -0.17 7.13 -82.77 -0.59 -0.76 16 7 C 0.60 10.48 7.82 -12.39 -0.10 10.39 16 8 O -0.54 -10.89 16.61 5.30 0.09 -10.80 16 9 N -0.70 -11.93 5.19 -53.01 -0.27 -12.21 16 10 C 0.13 2.63 2.79 -66.09 -0.18 2.44 16 11 H 0.09 1.92 7.33 -51.93 -0.38 1.54 16 12 C -0.15 -3.20 6.77 -24.58 -0.17 -3.37 16 13 C 0.15 3.85 5.89 -2.53 -0.01 3.84 16 14 N -0.60 -15.24 3.14 -162.34 -0.51 -15.75 16 15 C -0.22 -6.08 9.91 -15.06 -0.15 -6.23 16 16 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 17 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 18 N -0.92 -27.03 10.09 55.49 0.56 -26.47 16 19 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 23 C 0.15 3.25 3.49 -66.78 -0.23 3.02 16 24 H 0.04 0.76 7.70 -51.93 -0.40 0.36 16 25 C -0.15 -3.00 9.15 37.16 0.34 -2.66 16 26 N -0.26 -3.38 11.35 33.42 0.38 -3.00 16 27 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.08 0.58 8.08 -51.93 -0.42 0.17 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.24 8.04 -51.93 -0.42 -0.18 16 32 H 0.18 0.83 8.06 -52.49 -0.42 0.40 16 33 H 0.16 1.79 8.06 -52.48 -0.42 1.37 16 34 H 0.40 6.28 8.06 -40.82 -0.33 5.95 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.01 0.38 8.14 -51.92 -0.42 -0.04 16 38 H 0.11 3.03 5.87 -51.93 -0.30 2.72 16 39 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 1.07 8.06 -51.93 -0.42 0.65 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 348.99 15.07 5.26 5.26 Total: -1.00 -33.56 348.99 -7.64 -41.20 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.44 Total: 4.31 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -1.47 Total: 3.30 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: -0.05 Total: -60.40 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.56 -7.64 -41.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088898851.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.462 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds