Wall clock time and date at job start Tue Mar 31 2020 03:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47290 * 2 1 4 4 C 1.35031 * 124.88418 * 124.99598 * 3 2 1 5 5 C 1.35367 * 107.22543 * 179.76759 * 4 3 2 6 6 C 1.41494 * 105.50576 * 0.23337 * 5 4 3 7 7 C 1.47709 * 126.52007 * 179.97438 * 6 5 4 8 8 O 1.21576 * 119.99931 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00121 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99818 * 180.02562 * 9 7 6 11 11 H 1.09001 * 110.64357 * 325.69993 * 10 9 7 12 12 C 1.55151 * 110.72006 * 88.84748 * 10 9 7 13 13 C 1.54914 * 101.58356 * 153.86203 * 12 10 9 14 14 N 1.47424 * 104.83204 * 322.98753 * 13 12 10 15 15 C 1.36936 * 125.64863 * 204.16320 * 14 13 12 16 16 H 1.07996 * 119.99580 * 179.97438 * 15 14 13 17 17 C 1.38805 * 119.99762 * 359.97239 * 15 14 13 18 18 N 1.31618 * 120.00392 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99862 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47027 * 60.00598 * 19 17 15 21 21 H 1.48501 * 109.47112 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47083 * 300.00690 * 19 17 15 23 23 C 1.47322 * 108.73648 * 24.28576 * 14 13 12 24 24 H 1.08994 * 109.84946 * 239.38950 * 23 14 13 25 25 C 1.53000 * 110.06529 * 118.12509 * 23 14 13 26 26 N 1.28472 * 124.88401 * 305.18268 * 3 2 1 27 27 H 1.08998 * 109.47405 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46813 * 300.00146 * 1 2 3 29 29 H 1.08995 * 109.47189 * 59.99476 * 1 2 3 30 30 H 1.08991 * 109.47166 * 239.99694 * 2 1 3 31 31 H 1.09006 * 109.47050 * 119.99781 * 2 1 3 32 32 H 1.08002 * 126.38961 * 0.04238 * 4 3 2 33 33 H 1.08008 * 127.24664 * 180.24553 * 5 4 3 34 34 H 0.97003 * 119.99961 * 0.02562 * 9 7 6 35 35 H 1.09005 * 110.99992 * 271.93307 * 12 10 9 36 36 H 1.08995 * 111.00982 * 35.78597 * 12 10 9 37 37 H 1.09008 * 110.36483 * 81.82658 * 13 12 10 38 38 H 1.08993 * 110.36531 * 204.14825 * 13 12 10 39 39 H 0.97001 * 120.00031 * 179.97438 * 18 17 15 40 40 H 1.08992 * 109.46981 * 302.26738 * 25 23 14 41 41 H 1.09001 * 109.46811 * 62.27070 * 25 23 14 42 42 H 1.09003 * 109.47048 * 182.26853 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8748 1.8975 0.9074 5 6 3.0868 3.1907 0.5680 6 6 2.3027 3.4116 -0.5889 7 6 2.1906 4.6744 -1.3469 8 8 2.8110 5.6562 -0.9874 9 7 1.4005 4.7382 -2.4369 10 6 1.2898 5.9906 -3.1890 11 1 1.3516 6.8480 -2.5189 12 6 2.3844 6.0709 -4.2857 13 6 1.7173 7.0084 -5.3229 14 7 0.2906 6.6377 -5.3041 15 6 -0.5981 6.8323 -6.3276 16 1 -1.6270 6.5238 -6.2152 17 6 -0.1765 7.4260 -7.5093 18 7 1.0775 7.8015 -7.6463 19 14 -1.3887 7.6908 -8.9057 20 1 -2.4963 8.5640 -8.4408 21 1 -0.6943 8.3374 -10.0481 22 1 -1.9391 6.3813 -9.3385 23 6 -0.0222 6.0257 -4.0010 24 1 -0.3943 5.0118 -4.1481 25 6 -1.0678 6.8652 -3.2643 26 7 1.6909 2.2764 -0.8614 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 3.3128 1.3749 1.7449 33 1 3.7212 3.9037 1.0737 34 1 0.9052 3.9549 -2.7235 35 1 3.3001 6.5123 -3.8921 36 1 2.5796 5.0886 -4.7157 37 1 1.8424 8.0504 -5.0281 38 1 2.1400 6.8402 -6.3133 39 1 1.3721 8.2161 -8.4723 40 1 -0.6950 7.8817 -3.1391 41 1 -1.9911 6.8854 -3.8433 42 1 -1.2622 6.4263 -2.2856 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088898851.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:56 Heat of formation + Delta-G solvation = 47.507692 kcal Electronic energy + Delta-G solvation = -23379.511393 eV Core-core repulsion = 19975.282361 eV Total energy + Delta-G solvation = -3404.229032 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.58444 -40.82912 -39.08267 -35.62711 -35.42998 -33.84893 -32.09244 -31.69750 -31.06048 -30.24294 -26.98123 -25.90467 -25.21744 -23.22400 -22.34606 -22.00079 -21.50494 -20.76027 -18.78895 -18.69337 -17.71251 -17.29338 -16.94104 -16.60606 -15.86134 -15.69447 -15.45027 -15.27319 -15.02674 -14.52000 -14.38138 -14.06570 -13.94206 -13.72201 -13.26311 -13.25564 -12.95168 -12.94171 -12.71464 -12.60874 -12.28942 -12.25503 -12.13057 -12.02152 -11.80196 -11.58039 -11.46751 -11.20534 -10.71799 -10.28642 -10.08329 -9.90719 -8.90239 -7.73648 -5.19179 0.55364 1.24664 1.48622 1.52054 1.57708 1.58886 2.14203 2.38465 2.53502 3.34091 3.36651 3.58231 3.83412 3.93269 3.95446 4.00790 4.08524 4.18604 4.30256 4.39943 4.48516 4.60353 4.65525 4.75843 4.78879 4.81563 4.83925 4.90457 4.94092 5.03811 5.10498 5.26257 5.32996 5.39608 5.49907 5.59075 5.59641 5.79794 5.95438 6.30562 6.45672 6.94225 7.11600 7.17714 7.78636 8.43059 9.28234 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024262 B = 0.003399 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.802922 B = 8234.825938 C = 8806.912087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.107 3.893 3 N -0.276 5.276 4 C 0.003 3.997 5 C -0.205 4.205 6 C -0.046 4.046 7 C 0.601 3.399 8 O -0.573 6.573 9 N -0.694 5.694 10 C 0.151 3.849 11 H 0.084 0.916 12 C -0.139 4.139 13 C 0.160 3.840 14 N -0.614 5.614 15 C -0.230 4.230 16 H 0.085 0.915 17 C -0.068 4.068 18 N -0.951 5.951 19 Si 0.981 3.019 20 H -0.279 1.279 21 H -0.296 1.296 22 H -0.276 1.276 23 C 0.152 3.848 24 H 0.048 0.952 25 C -0.145 4.145 26 N -0.274 5.274 27 H 0.104 0.896 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.102 0.898 31 H 0.145 0.855 32 H 0.230 0.770 33 H 0.162 0.838 34 H 0.412 0.588 35 H 0.068 0.932 36 H 0.066 0.934 37 H -0.012 1.012 38 H 0.079 0.921 39 H 0.246 0.754 40 H 0.039 0.961 41 H 0.049 0.951 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.064 -19.442 19.334 27.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.011 4.011 3 N -0.066 5.066 4 C -0.140 4.140 5 C -0.233 4.233 6 C -0.205 4.205 7 C 0.387 3.613 8 O -0.451 6.451 9 N -0.344 5.344 10 C 0.045 3.955 11 H 0.102 0.898 12 C -0.179 4.179 13 C 0.034 3.966 14 N -0.339 5.339 15 C -0.359 4.359 16 H 0.103 0.897 17 C -0.261 4.261 18 N -0.601 5.601 19 Si 0.809 3.191 20 H -0.205 1.205 21 H -0.222 1.222 22 H -0.201 1.201 23 C 0.045 3.955 24 H 0.065 0.935 25 C -0.205 4.205 26 N -0.112 5.112 27 H 0.122 0.878 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.120 0.880 31 H 0.163 0.837 32 H 0.247 0.753 33 H 0.180 0.820 34 H 0.248 0.752 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.006 0.994 38 H 0.097 0.903 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.684 -19.293 18.611 26.815 hybrid contribution -0.081 0.828 -0.649 1.055 sum 0.604 -18.465 17.962 25.767 Atomic orbital electron populations 1.22067 0.93328 1.04520 1.02472 1.22484 0.96588 0.74751 1.07240 1.46144 1.31522 1.11080 1.17853 1.23505 0.97565 0.94303 0.98622 1.22010 1.05177 0.97963 0.98183 1.21759 1.04883 0.92863 1.00948 1.17276 0.78462 0.86044 0.79470 1.90750 1.47257 1.37341 1.69727 1.45750 1.46971 1.14209 1.27506 1.21813 0.95250 0.86516 0.91884 0.89793 1.23212 0.97754 1.00464 0.96430 1.21663 0.83917 0.92722 0.98261 1.44794 1.06790 1.70762 1.11578 1.19374 0.91742 1.32648 0.92124 0.89729 1.25630 0.98314 1.01441 1.00680 1.70038 1.15944 1.47706 1.26409 0.85116 0.77726 0.77890 0.78364 1.20523 1.22239 1.20144 1.21216 0.92709 0.96153 0.85446 0.93474 1.22102 0.99140 0.99675 0.99546 1.73419 1.22440 0.98254 1.17062 0.87765 0.92479 0.93160 0.88000 0.83737 0.75328 0.82037 0.75162 0.91353 0.91559 0.99379 0.90321 0.94391 0.94201 0.93142 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 10.01 71.98 0.72 -0.66 16 2 C 0.11 0.73 7.12 86.38 0.61 1.34 16 3 N -0.28 -4.48 3.41 -347.95 -1.19 -5.67 16 4 C 0.00 0.04 11.40 83.54 0.95 0.99 16 5 C -0.21 -4.65 10.81 22.41 0.24 -4.41 16 6 C -0.05 -1.33 7.13 42.45 0.30 -1.03 16 7 C 0.60 21.08 7.82 86.75 0.68 21.76 16 8 O -0.57 -23.68 16.61 -3.95 -0.07 -23.74 16 9 N -0.69 -23.50 5.19 -439.88 -2.28 -25.78 16 10 C 0.15 5.93 2.79 46.18 0.13 6.06 16 11 H 0.08 3.51 7.33 -2.39 -0.02 3.49 16 12 C -0.14 -5.95 6.77 31.99 0.22 -5.74 16 13 C 0.16 8.35 5.89 86.86 0.51 8.86 16 14 N -0.61 -32.00 3.14 -667.53 -2.10 -34.10 16 15 C -0.23 -12.86 9.91 84.03 0.83 -12.03 16 16 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 17 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 18 N -0.95 -57.63 10.09 21.65 0.22 -57.41 16 19 Si 0.98 46.01 29.55 68.60 2.03 48.03 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 C 0.15 6.35 3.49 45.29 0.16 6.51 16 24 H 0.05 1.91 7.70 -2.39 -0.02 1.89 16 25 C -0.15 -5.54 9.15 71.98 0.66 -4.88 16 26 N -0.27 -6.74 11.35 -48.18 -0.55 -7.29 16 27 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.05 0.70 8.08 -2.39 -0.02 0.68 16 30 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.14 -0.19 8.04 -2.38 -0.02 -0.21 16 32 H 0.23 0.73 8.06 -2.91 -0.02 0.71 16 33 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 34 H 0.41 12.58 8.06 -92.71 -0.75 11.83 16 35 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 36 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 37 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 38 H 0.08 4.61 5.87 -2.39 -0.01 4.59 16 39 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 40 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.05 1.94 8.06 -2.39 -0.02 1.92 16 42 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -75.75 348.99 2.82 -72.92 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.27 Total: 19.69 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 6.48 Total: 13.34 kcal Atomic # 7 Polarization: -124.35 SS G_CDS: -5.89 Total: -130.24 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.07 Total: -23.74 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -75.75 2.82 -72.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088898851.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.432 kcal (2) G-P(sol) polarization free energy of solvation -75.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds