Wall clock time and date at job start Tue Mar 31 2020 03:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47289 * 2 1 4 4 C 1.35844 * 126.13801 * 89.97002 * 3 2 1 5 5 N 1.30175 * 109.00160 * 180.02562 * 4 3 2 6 6 C 1.35754 * 108.86977 * 0.02562 * 5 4 3 7 7 C 1.47323 * 126.23795 * 179.97438 * 6 5 4 8 8 O 1.21617 * 119.99988 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99727 * 0.02958 * 7 6 5 10 10 C 1.46504 * 119.99811 * 179.97438 * 9 7 6 11 11 H 1.08996 * 110.63797 * 323.31096 * 10 9 7 12 12 C 1.55155 * 110.71889 * 86.45186 * 10 9 7 13 13 C 1.54912 * 101.57968 * 154.04276 * 12 10 9 14 14 N 1.47426 * 104.83261 * 322.99067 * 13 12 10 15 15 C 1.36941 * 125.64875 * 203.86480 * 14 13 12 16 16 H 1.08001 * 120.00063 * 180.02562 * 15 14 13 17 17 C 1.38810 * 119.99930 * 0.02562 * 15 14 13 18 18 N 1.31617 * 120.00219 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00125 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46763 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47257 * 119.99870 * 19 17 15 22 22 H 1.48497 * 109.47230 * 239.99856 * 19 17 15 23 23 C 1.47024 * 108.70449 * 24.12870 * 14 13 12 24 24 H 1.09002 * 109.88101 * 239.52444 * 23 14 13 25 25 C 1.53001 * 109.88112 * 118.35785 * 23 14 13 26 26 C 1.35382 * 126.13208 * 270.25823 * 3 2 1 27 27 H 1.08995 * 109.47328 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46884 * 300.00732 * 1 2 3 29 29 H 1.08997 * 109.46850 * 60.00094 * 1 2 3 30 30 H 1.08995 * 109.47417 * 239.99595 * 2 1 3 31 31 H 1.09005 * 109.47107 * 119.99688 * 2 1 3 32 32 H 1.08002 * 125.50043 * 0.04506 * 4 3 2 33 33 H 0.96999 * 120.00347 * 359.97438 * 9 7 6 34 34 H 1.08997 * 111.00368 * 35.97468 * 12 10 9 35 35 H 1.08992 * 111.03872 * 272.12933 * 12 10 9 36 36 H 1.09002 * 110.36496 * 204.15483 * 13 12 10 37 37 H 1.08997 * 110.36790 * 81.83118 * 13 12 10 38 38 H 0.97004 * 120.00482 * 180.02562 * 18 17 15 39 39 H 1.08993 * 109.46793 * 61.45719 * 25 23 14 40 40 H 1.09005 * 109.46593 * 181.45282 * 25 23 14 41 41 H 1.08995 * 109.46984 * 301.45265 * 25 23 14 42 42 H 1.08001 * 126.56254 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2849 2.1367 1.0971 5 7 2.6992 3.3096 0.7135 6 6 2.7127 3.3484 -0.6434 7 6 3.1165 4.4933 -1.4779 8 8 3.0841 4.4035 -2.6904 9 7 3.5219 5.6402 -0.8978 10 6 3.9241 6.7786 -1.7277 11 1 4.4496 6.4373 -2.6194 12 6 2.6921 7.6398 -2.1123 13 6 3.3419 9.0273 -2.3415 14 7 4.3978 9.1233 -1.3172 15 6 4.9237 10.2857 -0.8196 16 1 5.6981 10.2496 -0.0677 17 6 4.4613 11.5103 -1.2816 18 7 3.5172 11.5543 -2.1975 19 14 5.1791 13.0959 -0.6033 20 1 6.2189 12.7759 0.4075 21 1 5.7888 13.8764 -1.7099 22 1 4.1008 13.8959 0.0310 23 6 4.7972 7.7644 -0.9230 24 1 4.6280 7.6233 0.1446 25 6 6.2743 7.5399 -1.2528 26 6 2.2798 2.1355 -1.0934 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.1716 1.8159 2.1221 33 1 3.5475 5.7120 0.0692 34 1 1.9707 7.6763 -1.2961 35 1 2.2266 7.2707 -3.0262 36 1 2.6053 9.8187 -2.2024 37 1 3.7757 9.0828 -3.3399 38 1 3.1943 12.4100 -2.5206 39 1 6.8836 8.2479 -0.6911 40 1 6.5565 6.5226 -0.9817 41 1 6.4349 7.6893 -2.3204 42 1 2.1680 1.8342 -2.1245 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088984497.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:54 Heat of formation + Delta-G solvation = 49.847114 kcal Electronic energy + Delta-G solvation = -23205.407858 eV Core-core repulsion = 19801.280271 eV Total energy + Delta-G solvation = -3404.127587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.33783 -39.23814 -37.33901 -35.32720 -33.82931 -31.91676 -30.66677 -30.28310 -29.81105 -28.42040 -25.22801 -24.11150 -23.89620 -22.78494 -21.13567 -20.31017 -19.87649 -19.45104 -17.87635 -16.68351 -16.19343 -15.93326 -15.61795 -14.95124 -14.68335 -14.45855 -14.12171 -13.96634 -13.80281 -13.64968 -13.21199 -13.02819 -12.64521 -12.62541 -12.04404 -11.92687 -11.86028 -11.45660 -11.04424 -10.80234 -10.76269 -10.43799 -10.36327 -10.31625 -10.00447 -9.99327 -9.71255 -9.62309 -9.46947 -8.80746 -8.59338 -8.38193 -6.78963 -5.58349 -3.00603 1.54458 2.34339 2.37540 3.44232 3.49053 3.52032 3.60660 3.74654 4.11226 4.33970 4.39247 4.48700 4.55332 4.65257 5.01936 5.08454 5.11684 5.33670 5.47955 5.50165 5.51250 5.66721 5.75605 5.84855 5.94579 6.24478 6.30374 6.37803 6.44040 6.48939 6.66613 6.74632 6.81218 6.84566 6.98388 7.24656 7.60117 7.62856 7.70860 7.93199 8.02969 8.42459 8.61629 9.28149 9.89109 10.53784 11.45210 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.036376 B = 0.002975 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.554430 B = 9410.238441 C = 9512.243898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.099 3.901 3 N -0.459 5.459 4 C 0.182 3.818 5 N -0.462 5.462 6 C -0.055 4.055 7 C 0.600 3.400 8 O -0.550 6.550 9 N -0.700 5.700 10 C 0.136 3.864 11 H 0.091 0.909 12 C -0.153 4.153 13 C 0.154 3.846 14 N -0.596 5.596 15 C -0.216 4.216 16 H 0.078 0.922 17 C -0.012 4.012 18 N -0.921 5.921 19 Si 0.913 3.087 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.155 3.845 24 H 0.038 0.962 25 C -0.155 4.155 26 C 0.030 3.970 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.209 0.791 33 H 0.405 0.595 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.108 0.892 37 H 0.014 0.986 38 H 0.251 0.749 39 H 0.054 0.946 40 H 0.038 0.962 41 H 0.051 0.949 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.089 -24.927 5.751 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.142 5.142 4 C -0.101 4.101 5 N -0.180 5.180 6 C -0.185 4.185 7 C 0.385 3.615 8 O -0.429 6.429 9 N -0.349 5.349 10 C 0.031 3.969 11 H 0.109 0.891 12 C -0.192 4.192 13 C 0.029 3.971 14 N -0.321 5.321 15 C -0.345 4.345 16 H 0.096 0.904 17 C -0.208 4.208 18 N -0.570 5.570 19 Si 0.744 3.256 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.218 1.218 23 C 0.047 3.953 24 H 0.055 0.945 25 C -0.214 4.214 26 C -0.109 4.109 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.226 0.774 33 H 0.241 0.759 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.126 0.874 37 H 0.032 0.968 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -4.925 -24.185 5.383 25.262 hybrid contribution 0.150 0.087 0.325 0.369 sum -4.775 -24.098 5.709 25.221 Atomic orbital electron populations 1.22188 0.93803 1.03367 1.03618 1.21940 0.95864 0.79454 1.05024 1.45529 1.48760 1.13041 1.06883 1.25155 1.03862 0.87537 0.93568 1.70634 1.17707 1.19119 1.10561 1.20709 1.11661 0.95658 0.90435 1.16868 0.76953 0.81286 0.86348 1.90776 1.55516 1.83171 1.13401 1.45858 1.65637 1.12552 1.10828 1.22144 0.96491 0.84517 0.93733 0.89112 1.23396 0.96805 0.98483 1.00547 1.21935 0.91927 0.92740 0.90529 1.44509 1.42756 0.99039 1.45769 1.19081 1.15700 0.82574 1.17113 0.90410 1.24784 0.99294 0.97576 0.99117 1.69820 1.31135 1.23539 1.32514 0.86010 0.78059 0.83549 0.77955 1.20570 1.21851 1.21825 1.20989 0.92009 0.86282 0.96015 0.94483 1.22232 0.98375 0.99156 1.01649 1.22574 1.03236 0.91899 0.93170 0.90357 0.91585 0.91572 0.88729 0.88478 0.77428 0.75918 0.92004 0.91966 0.87440 0.96786 0.93827 0.92727 0.94295 0.92970 0.79668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.60 10.24 37.16 0.38 -0.22 16 2 C 0.10 0.37 6.84 -4.04 -0.03 0.34 16 3 N -0.46 -3.69 2.73 -118.36 -0.32 -4.01 16 4 C 0.18 1.68 12.55 -89.91 -1.13 0.55 16 5 N -0.46 -6.17 11.01 -11.03 -0.12 -6.30 16 6 C -0.06 -0.81 6.98 -83.09 -0.58 -1.39 16 7 C 0.60 10.56 7.81 -12.57 -0.10 10.46 16 8 O -0.55 -11.07 16.61 5.26 0.09 -10.98 16 9 N -0.70 -12.32 5.20 -53.13 -0.28 -12.60 16 10 C 0.14 2.71 2.76 -66.09 -0.18 2.53 16 11 H 0.09 1.90 7.40 -51.93 -0.38 1.52 16 12 C -0.15 -3.26 6.77 -24.58 -0.17 -3.43 16 13 C 0.15 3.91 5.88 -2.53 -0.01 3.89 16 14 N -0.60 -15.46 3.13 -162.56 -0.51 -15.96 16 15 C -0.22 -6.05 9.86 -15.06 -0.15 -6.20 16 16 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 17 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 18 N -0.92 -27.30 10.09 55.49 0.56 -26.74 16 19 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 C 0.16 3.33 3.48 -66.95 -0.23 3.10 16 24 H 0.04 0.79 7.70 -51.93 -0.40 0.39 16 25 C -0.15 -3.05 9.14 37.16 0.34 -2.71 16 26 C 0.03 0.33 11.26 -16.64 -0.19 0.14 16 27 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.21 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.41 6.70 8.04 -40.82 -0.33 6.38 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.11 3.04 5.89 -51.93 -0.31 2.73 16 37 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.05 1.10 8.02 -51.93 -0.42 0.68 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.19 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 349.40 15.07 5.27 5.27 Total: -1.00 -34.41 349.40 -8.94 -43.34 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.45 Total: 4.01 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -2.14 Total: 6.61 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: -0.67 Total: -65.61 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.41 -8.94 -43.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088984497.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.191 kcal (2) G-P(sol) polarization free energy of solvation -34.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds