Wall clock time and date at job start Tue Mar 31 2020 03:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47289 * 2 1 4 4 C 1.35844 * 126.13801 * 89.97002 * 3 2 1 5 5 N 1.30175 * 109.00160 * 180.02562 * 4 3 2 6 6 C 1.35754 * 108.86977 * 0.02562 * 5 4 3 7 7 C 1.47323 * 126.23795 * 179.97438 * 6 5 4 8 8 O 1.21617 * 119.99988 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99727 * 0.02958 * 7 6 5 10 10 C 1.46504 * 119.99811 * 179.97438 * 9 7 6 11 11 H 1.08996 * 110.63797 * 323.31096 * 10 9 7 12 12 C 1.55155 * 110.71889 * 86.45186 * 10 9 7 13 13 C 1.54912 * 101.57968 * 154.04276 * 12 10 9 14 14 N 1.47426 * 104.83261 * 322.99067 * 13 12 10 15 15 C 1.36941 * 125.64875 * 203.86480 * 14 13 12 16 16 H 1.08001 * 120.00063 * 180.02562 * 15 14 13 17 17 C 1.38810 * 119.99930 * 0.02562 * 15 14 13 18 18 N 1.31617 * 120.00219 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00125 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46763 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47257 * 119.99870 * 19 17 15 22 22 H 1.48497 * 109.47230 * 239.99856 * 19 17 15 23 23 C 1.47024 * 108.70449 * 24.12870 * 14 13 12 24 24 H 1.09002 * 109.88101 * 239.52444 * 23 14 13 25 25 C 1.53001 * 109.88112 * 118.35785 * 23 14 13 26 26 C 1.35382 * 126.13208 * 270.25823 * 3 2 1 27 27 H 1.08995 * 109.47328 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46884 * 300.00732 * 1 2 3 29 29 H 1.08997 * 109.46850 * 60.00094 * 1 2 3 30 30 H 1.08995 * 109.47417 * 239.99595 * 2 1 3 31 31 H 1.09005 * 109.47107 * 119.99688 * 2 1 3 32 32 H 1.08002 * 125.50043 * 0.04506 * 4 3 2 33 33 H 0.96999 * 120.00347 * 359.97438 * 9 7 6 34 34 H 1.08997 * 111.00368 * 35.97468 * 12 10 9 35 35 H 1.08992 * 111.03872 * 272.12933 * 12 10 9 36 36 H 1.09002 * 110.36496 * 204.15483 * 13 12 10 37 37 H 1.08997 * 110.36790 * 81.83118 * 13 12 10 38 38 H 0.97004 * 120.00482 * 180.02562 * 18 17 15 39 39 H 1.08993 * 109.46793 * 61.45719 * 25 23 14 40 40 H 1.09005 * 109.46593 * 181.45282 * 25 23 14 41 41 H 1.08995 * 109.46984 * 301.45265 * 25 23 14 42 42 H 1.08001 * 126.56254 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2849 2.1367 1.0971 5 7 2.6992 3.3096 0.7135 6 6 2.7127 3.3484 -0.6434 7 6 3.1165 4.4933 -1.4779 8 8 3.0841 4.4035 -2.6904 9 7 3.5219 5.6402 -0.8978 10 6 3.9241 6.7786 -1.7277 11 1 4.4496 6.4373 -2.6194 12 6 2.6921 7.6398 -2.1123 13 6 3.3419 9.0273 -2.3415 14 7 4.3978 9.1233 -1.3172 15 6 4.9237 10.2857 -0.8196 16 1 5.6981 10.2496 -0.0677 17 6 4.4613 11.5103 -1.2816 18 7 3.5172 11.5543 -2.1975 19 14 5.1791 13.0959 -0.6033 20 1 6.2189 12.7759 0.4075 21 1 5.7888 13.8764 -1.7099 22 1 4.1008 13.8959 0.0310 23 6 4.7972 7.7644 -0.9230 24 1 4.6280 7.6233 0.1446 25 6 6.2743 7.5399 -1.2528 26 6 2.2798 2.1355 -1.0934 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.1716 1.8159 2.1221 33 1 3.5475 5.7120 0.0692 34 1 1.9707 7.6763 -1.2961 35 1 2.2266 7.2707 -3.0262 36 1 2.6053 9.8187 -2.2024 37 1 3.7757 9.0828 -3.3399 38 1 3.1943 12.4100 -2.5206 39 1 6.8836 8.2479 -0.6911 40 1 6.5565 6.5226 -0.9817 41 1 6.4349 7.6893 -2.3204 42 1 2.1680 1.8342 -2.1245 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088984497.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:54 Heat of formation + Delta-G solvation = 27.812275 kcal Electronic energy + Delta-G solvation = -23206.363361 eV Core-core repulsion = 19801.280271 eV Total energy + Delta-G solvation = -3405.083090 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.12830 -40.73315 -39.04036 -35.92461 -35.53002 -33.78027 -32.07347 -31.26671 -30.94510 -30.09274 -26.77364 -25.86967 -24.77823 -23.89183 -22.11735 -21.80020 -21.44973 -20.89479 -18.80690 -18.66385 -17.51401 -17.07374 -16.68747 -16.48610 -15.82054 -15.63278 -15.51508 -15.25342 -14.85110 -14.70642 -14.58847 -14.34471 -14.00101 -13.77507 -13.44642 -13.22774 -12.96004 -12.92495 -12.74377 -12.62238 -12.22658 -12.18736 -12.08983 -11.93147 -11.57513 -11.46289 -11.32420 -11.00083 -10.73221 -10.72640 -10.05445 -9.57112 -8.89350 -7.73695 -5.18860 0.59359 1.48504 1.48981 1.50059 1.60279 1.72529 2.27413 2.53662 2.57460 3.36717 3.43501 3.61708 3.81427 3.85255 3.93059 3.97255 4.13403 4.17178 4.23456 4.44899 4.47156 4.49969 4.61923 4.67605 4.74107 4.81231 4.86971 4.95135 5.05693 5.12669 5.15196 5.26251 5.36256 5.46763 5.50894 5.60468 5.63050 5.80158 6.15884 6.30835 6.54354 6.91292 7.12142 7.27163 7.79194 8.43707 9.28863 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.036376 B = 0.002975 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.554430 B = 9410.238441 C = 9512.243898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.094 3.906 3 N -0.449 5.449 4 C 0.197 3.803 5 N -0.500 5.500 6 C -0.097 4.097 7 C 0.599 3.401 8 O -0.584 6.584 9 N -0.695 5.695 10 C 0.153 3.847 11 H 0.082 0.918 12 C -0.138 4.138 13 C 0.160 3.840 14 N -0.614 5.614 15 C -0.226 4.226 16 H 0.085 0.915 17 C -0.071 4.071 18 N -0.952 5.952 19 Si 0.981 3.019 20 H -0.265 1.265 21 H -0.295 1.295 22 H -0.292 1.292 23 C 0.152 3.848 24 H 0.046 0.954 25 C -0.145 4.145 26 C 0.044 3.956 27 H 0.099 0.901 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.108 0.892 31 H 0.127 0.873 32 H 0.251 0.749 33 H 0.412 0.588 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.078 0.922 37 H -0.011 1.011 38 H 0.246 0.754 39 H 0.049 0.951 40 H 0.067 0.933 41 H 0.039 0.961 42 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.911 -27.712 7.725 29.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.026 4.026 3 N -0.130 5.130 4 C -0.087 4.087 5 N -0.219 5.219 6 C -0.225 4.225 7 C 0.387 3.613 8 O -0.465 6.465 9 N -0.345 5.345 10 C 0.047 3.953 11 H 0.100 0.900 12 C -0.178 4.178 13 C 0.035 3.965 14 N -0.339 5.339 15 C -0.355 4.355 16 H 0.103 0.897 17 C -0.263 4.263 18 N -0.602 5.602 19 Si 0.809 3.191 20 H -0.189 1.189 21 H -0.222 1.222 22 H -0.219 1.219 23 C 0.045 3.955 24 H 0.063 0.937 25 C -0.204 4.204 26 C -0.098 4.098 27 H 0.118 0.882 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.127 0.873 31 H 0.146 0.854 32 H 0.267 0.733 33 H 0.248 0.752 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.007 0.993 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -4.741 -27.031 7.398 28.424 hybrid contribution 0.036 0.782 -0.243 0.820 sum -4.705 -26.249 7.155 27.611 Atomic orbital electron populations 1.22175 0.93613 1.04428 1.02470 1.22346 0.95894 0.77077 1.07293 1.45812 1.47323 1.14274 1.05590 1.25950 1.01198 0.86338 0.95249 1.70545 1.19770 1.21642 1.09965 1.20358 1.15198 0.95782 0.91157 1.17333 0.75891 0.81761 0.86336 1.90744 1.56965 1.83828 1.14917 1.45701 1.65954 1.12040 1.10787 1.21760 0.95126 0.84859 0.93567 0.90001 1.23198 0.97240 0.96466 1.00895 1.21650 0.91360 0.94079 0.89432 1.44743 1.43046 1.00397 1.45697 1.19444 1.15539 0.83508 1.16970 0.89703 1.25642 1.00029 1.00788 0.99811 1.70060 1.32486 1.23778 1.33866 0.84964 0.77445 0.79328 0.77319 1.18914 1.22223 1.21950 1.21157 0.93363 0.84527 0.96487 0.93654 1.22101 0.96751 1.00786 1.00759 1.22738 1.01386 0.91163 0.94495 0.88216 0.92072 0.93360 0.87344 0.85446 0.73333 0.75168 0.91811 0.91424 0.90454 0.99327 0.94420 0.93182 0.91383 0.94167 0.78538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.65 10.24 71.98 0.74 0.08 16 2 C 0.09 0.32 6.84 86.38 0.59 0.91 16 3 N -0.45 -5.82 2.73 -528.38 -1.44 -7.26 16 4 C 0.20 3.00 12.55 180.10 2.26 5.26 16 5 N -0.50 -12.56 11.01 -188.82 -2.08 -14.63 16 6 C -0.10 -2.74 6.98 40.50 0.28 -2.46 16 7 C 0.60 21.06 7.81 86.63 0.68 21.74 16 8 O -0.58 -23.72 16.61 -4.09 -0.07 -23.79 16 9 N -0.70 -24.37 5.20 -440.27 -2.29 -26.66 16 10 C 0.15 6.13 2.76 46.18 0.13 6.26 16 11 H 0.08 3.47 7.40 -2.39 -0.02 3.45 16 12 C -0.14 -6.06 6.77 31.99 0.22 -5.84 16 13 C 0.16 8.49 5.88 86.86 0.51 9.00 16 14 N -0.61 -32.44 3.13 -668.23 -2.09 -34.53 16 15 C -0.23 -12.76 9.86 84.03 0.83 -11.93 16 16 H 0.09 4.57 7.83 -2.91 -0.02 4.54 16 17 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 18 N -0.95 -58.22 10.09 21.65 0.22 -58.00 16 19 Si 0.98 46.55 29.55 68.60 2.03 48.58 16 20 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 21 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 23 C 0.15 6.50 3.48 45.34 0.16 6.66 16 24 H 0.05 1.90 7.70 -2.39 -0.02 1.88 16 25 C -0.14 -5.61 9.14 71.98 0.66 -4.95 16 26 C 0.04 0.89 11.26 83.72 0.94 1.84 16 27 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 28 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.13 -0.24 8.14 -2.38 -0.02 -0.26 16 32 H 0.25 1.35 8.06 -2.91 -0.02 1.33 16 33 H 0.41 13.42 8.04 -92.71 -0.75 12.68 16 34 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 36 H 0.08 4.59 5.89 -2.39 -0.01 4.57 16 37 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 38 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 39 H 0.05 1.96 8.02 -2.39 -0.02 1.94 16 40 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 41 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.20 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -77.05 349.40 3.00 -74.04 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.27 Total: 19.31 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: 8.45 Total: 22.94 kcal Atomic # 7 Polarization: -133.40 SS G_CDS: -7.68 Total: -141.08 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.07 Total: -23.79 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -77.05 3.00 -74.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088984497.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.857 kcal (2) G-P(sol) polarization free energy of solvation -77.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds