Wall clock time and date at job start Tue Mar 31 2020 02:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.39675 * 127.32046 * 2 1 4 4 N 1.30868 * 107.86154 * 179.83009 * 3 2 1 5 5 N 1.28438 * 110.92895 * 0.45316 * 4 3 2 6 6 C 1.46496 * 125.19341 * 179.74608 * 5 4 3 7 7 C 1.36602 * 109.61440 * 359.71315 * 5 4 3 8 8 C 1.47167 * 126.87790 * 179.97438 * 7 5 4 9 9 O 1.21629 * 120.00236 * 93.02168 * 8 7 5 10 10 N 1.34780 * 120.00187 * 273.01591 * 8 7 5 11 11 C 1.46495 * 120.00153 * 185.29825 * 10 8 7 12 12 C 1.53004 * 109.47197 * 180.02562 * 11 10 8 13 13 C 1.53787 * 113.61085 * 274.13728 * 12 11 10 14 14 C 1.53961 * 87.01584 * 220.04439 * 13 12 11 15 15 N 1.46496 * 113.53826 * 270.81325 * 14 13 12 16 16 C 1.36937 * 119.99734 * 252.49533 * 15 14 13 17 17 H 1.08003 * 119.99946 * 359.97438 * 16 15 14 18 18 C 1.38815 * 119.99857 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00309 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99926 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46964 * 90.00074 * 20 18 16 22 22 H 1.48501 * 109.46796 * 209.99963 * 20 18 16 23 23 H 1.48503 * 109.46839 * 330.00018 * 20 18 16 24 24 C 1.53777 * 113.61410 * 176.52889 * 12 11 10 25 25 H 1.09005 * 109.47165 * 269.68027 * 1 2 3 26 26 H 1.09004 * 109.47552 * 149.68463 * 1 2 3 27 27 H 1.09004 * 109.47375 * 29.68191 * 1 2 3 28 28 H 1.08002 * 126.06900 * 359.97438 * 3 2 1 29 29 H 1.08997 * 109.47112 * 274.71040 * 6 5 4 30 30 H 1.08999 * 109.47094 * 34.70919 * 6 5 4 31 31 H 1.09003 * 109.47017 * 154.70866 * 6 5 4 32 32 H 0.97007 * 119.99617 * 5.29606 * 10 8 7 33 33 H 1.09002 * 109.47025 * 299.99614 * 11 10 8 34 34 H 1.09000 * 109.47223 * 60.00121 * 11 10 8 35 35 H 1.08999 * 112.84963 * 45.32584 * 12 11 10 36 36 H 1.08999 * 113.61538 * 334.56452 * 13 12 11 37 37 H 1.08998 * 113.61480 * 105.47474 * 13 12 11 38 38 H 1.09002 * 113.74020 * 139.94291 * 14 13 12 39 39 H 0.96997 * 120.00217 * 72.49205 * 15 14 13 40 40 H 0.96999 * 120.00171 * 180.02562 * 19 18 16 41 41 H 1.08996 * 113.61061 * 254.52572 * 24 12 11 42 42 H 1.08995 * 113.61858 * 25.43190 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3537 1.1108 0.0000 4 7 3.5876 0.6748 0.0037 5 7 3.6206 -0.6091 -0.0034 6 6 4.8391 -1.4224 -0.0072 7 6 2.3461 -1.1006 -0.0061 8 6 1.9456 -2.5167 -0.0145 9 8 1.7268 -3.0930 1.0340 10 7 1.8210 -3.1749 -1.1840 11 6 1.3112 -4.5482 -1.2009 12 6 1.2703 -5.0593 -2.6425 13 6 -0.0205 -4.6876 -3.3914 14 6 0.0228 -6.1001 -4.0024 15 7 0.7850 -6.1742 -5.2513 16 6 0.1312 -6.3327 -6.4440 17 1 -0.9463 -6.4036 -6.4639 18 6 0.8534 -6.4024 -7.6275 19 7 2.1666 -6.3165 -7.6032 20 14 -0.0385 -6.6179 -9.2546 21 1 -0.3632 -5.2844 -9.8215 22 1 0.8321 -7.3599 -10.2017 23 1 -1.2933 -7.3809 -9.0340 24 6 0.8275 -6.5270 -2.7633 25 1 -0.3634 -0.0057 1.0277 26 1 -0.3634 -0.8871 -0.5187 27 1 -0.3634 0.8928 -0.5089 28 1 2.0450 2.1457 -0.0004 29 1 5.1887 -1.5482 -1.0319 30 1 5.6100 -0.9247 0.5811 31 1 4.6252 -2.3994 0.4263 32 1 2.0690 -2.7393 -2.0145 33 1 1.9665 -5.1864 -0.6081 34 1 0.3062 -4.5679 -0.7794 35 1 2.1792 -4.8301 -3.1988 36 1 -0.8743 -4.5221 -2.7343 37 1 0.1131 -3.8904 -4.1226 38 1 -0.9545 -6.5774 -4.0740 39 1 1.7528 -6.1109 -5.2333 40 1 2.6712 -6.3648 -8.4302 41 1 1.6446 -7.2124 -2.9883 42 1 0.2060 -6.8653 -1.9343 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091190853.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:27 Heat of formation + Delta-G solvation = 69.767630 kcal Electronic energy + Delta-G solvation = -22891.912554 eV Core-core repulsion = 19488.648785 eV Total energy + Delta-G solvation = -3403.263769 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.70496 -39.70501 -38.48698 -34.79669 -34.22258 -33.28448 -32.10809 -30.25570 -28.84938 -27.29680 -26.33556 -25.12730 -23.93099 -22.86743 -21.67018 -21.14689 -20.04741 -18.55759 -17.96323 -17.29648 -16.70944 -16.04328 -15.86559 -15.34472 -14.94261 -14.60512 -14.20779 -13.88391 -13.77081 -13.60941 -13.50166 -13.20188 -12.94802 -12.82971 -12.69734 -12.39238 -12.30375 -11.98990 -11.48266 -11.10232 -10.88504 -10.84395 -10.58990 -10.42664 -10.20729 -9.94386 -9.74359 -9.57106 -9.36104 -9.18160 -8.93501 -8.87327 -7.05308 -5.85471 -3.14686 1.46876 1.90648 2.46336 2.53563 3.07892 3.38876 3.44464 3.45902 4.21586 4.42325 4.51758 4.78406 4.81733 4.90553 4.96111 4.99415 5.06143 5.15149 5.17712 5.40043 5.40970 5.51871 5.52879 5.60828 5.75773 5.77999 5.86465 5.88650 6.02033 6.14566 6.22291 6.30856 6.35665 6.50848 6.52162 6.68407 6.81847 6.97884 7.26287 7.64782 7.84570 7.90900 8.33668 9.44525 10.01489 10.35531 11.36941 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020042 B = 0.003017 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.745850 B = 9279.722961 C = 9578.985529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.157 4.157 3 C 0.005 3.995 4 N -0.284 5.284 5 N -0.274 5.274 6 C 0.086 3.914 7 C -0.032 4.032 8 C 0.590 3.410 9 O -0.526 6.526 10 N -0.708 5.708 11 C 0.129 3.871 12 C -0.120 4.120 13 C -0.169 4.169 14 C 0.168 3.832 15 N -0.706 5.706 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.012 4.012 19 N -0.933 5.933 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.147 4.147 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.186 0.814 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.406 0.594 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.069 0.931 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.182 10.837 16.006 19.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.167 4.167 3 C -0.173 4.173 4 N -0.115 5.115 5 N -0.062 5.062 6 C -0.055 4.055 7 C -0.161 4.161 8 C 0.372 3.628 9 O -0.401 6.401 10 N -0.359 5.359 11 C 0.007 3.993 12 C -0.139 4.139 13 C -0.210 4.210 14 C 0.055 3.945 15 N -0.344 5.344 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.208 4.208 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.187 4.187 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.203 0.797 29 H 0.107 0.893 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.241 0.759 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.166 10.591 16.583 19.795 hybrid contribution -0.613 -0.003 -1.305 1.442 sum 1.553 10.588 15.278 18.653 Atomic orbital electron populations 1.20135 0.88302 1.02852 1.02352 1.20692 0.96930 0.90656 1.08448 1.23450 0.87705 0.99919 1.06218 1.73130 1.24503 0.93226 1.20618 1.45528 1.05482 1.03743 1.51443 1.22204 0.83837 0.94596 1.04820 1.21390 0.86103 0.94787 1.13775 1.17026 0.77964 0.83491 0.84295 1.90844 1.50133 1.67427 1.31702 1.46105 1.65155 1.15959 1.08672 1.21603 0.99288 0.80448 0.98004 1.22723 0.99954 0.98087 0.93128 1.23929 0.95352 1.02302 0.99415 1.21090 0.94822 0.92798 0.85777 1.42171 1.05836 1.85993 1.00429 1.19294 0.91529 1.42253 0.84381 0.90959 1.24762 0.95509 1.02622 0.97894 1.69655 1.04600 1.57129 1.26691 0.86172 0.78492 0.77647 0.83772 1.21646 1.21736 1.20652 1.23444 1.00898 0.94512 0.99835 0.91189 0.91708 0.90883 0.79721 0.89275 0.88307 0.88867 0.75927 0.91413 0.91158 0.88869 0.91318 0.91449 0.91874 0.78141 0.93418 0.91258 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.28 36.00 0.37 -0.36 16 2 C -0.16 -1.80 6.30 -104.03 -0.65 -2.46 16 3 C 0.00 0.05 12.00 -17.43 -0.21 -0.16 16 4 N -0.28 -3.47 11.90 30.59 0.36 -3.11 16 5 N -0.27 -3.17 3.75 -63.88 -0.24 -3.41 16 6 C 0.09 0.68 11.21 59.84 0.67 1.36 16 7 C -0.03 -0.40 6.71 -82.06 -0.55 -0.95 16 8 C 0.59 7.83 6.77 -12.63 -0.09 7.74 16 9 O -0.53 -8.66 17.12 5.25 0.09 -8.57 16 10 N -0.71 -8.32 5.55 -61.47 -0.34 -8.66 16 11 C 0.13 1.59 5.50 -4.04 -0.02 1.57 16 12 C -0.12 -1.67 3.62 -89.80 -0.33 -1.99 16 13 C -0.17 -2.65 7.44 -25.82 -0.19 -2.85 16 14 C 0.17 3.13 4.57 -67.02 -0.31 2.82 16 15 N -0.71 -16.89 5.31 -52.54 -0.28 -17.16 16 16 C -0.24 -6.55 9.97 -15.06 -0.15 -6.70 16 17 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 19 N -0.93 -27.36 13.06 55.49 0.72 -26.64 16 20 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C -0.15 -2.22 7.39 -25.92 -0.19 -2.41 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.64 8.07 -51.93 -0.42 0.22 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.19 1.39 8.06 -52.49 -0.42 0.96 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.72 7.66 -51.93 -0.40 0.32 16 32 H 0.41 4.38 8.46 -40.82 -0.35 4.04 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.88 7.88 -51.93 -0.41 0.47 16 35 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 36 H 0.07 0.96 7.92 -51.93 -0.41 0.55 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 39 H 0.38 9.73 7.90 -40.82 -0.32 9.40 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 358.24 15.07 5.40 5.40 Total: -1.00 -32.71 358.24 -7.55 -40.26 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -6.50 Total: 9.90 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.74 Total: -4.82 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.23 Total: -58.98 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.09 Total: -8.57 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.71 -7.55 -40.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091190853.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.026 kcal (2) G-P(sol) polarization free energy of solvation -32.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds