Wall clock time and date at job start Tue Mar 31 2020 03:19:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46500 * 109.47101 * 2 1
4 4 C 1.35032 * 124.88635 * 125.00577 * 3 2 1
5 5 C 1.35367 * 107.22837 * 179.97438 * 4 3 2
6 6 C 1.41504 * 105.50330 * 0.26137 * 5 4 3
7 7 C 1.47705 * 126.51490 * 179.70452 * 6 5 4
8 8 O 1.21564 * 120.00576 * 359.97438 * 7 6 5
9 9 N 1.34783 * 119.99706 * 179.97438 * 7 6 5
10 10 C 1.46500 * 120.00007 * 179.97438 * 9 7 6
11 11 C 1.52997 * 109.47307 * 180.02562 * 10 9 7
12 12 C 1.53781 * 113.61074 * 274.13812 * 11 10 9
13 13 C 1.53949 * 87.02081 * 220.04547 * 12 11 10
14 14 N 1.46501 * 113.54072 * 270.81485 * 13 12 11
15 15 C 1.36942 * 119.99667 * 252.49375 * 14 13 12
16 16 H 1.07994 * 120.00393 * 359.97438 * 15 14 13
17 17 C 1.38815 * 119.99701 * 179.97438 * 15 14 13
18 18 N 1.31625 * 120.00021 * 359.97438 * 17 15 14
19 19 Si 1.86795 * 119.99940 * 179.97438 * 17 15 14
20 20 H 1.48506 * 109.47268 * 0.02562 * 19 17 15
21 21 H 1.48501 * 109.47130 * 119.99764 * 19 17 15
22 22 H 1.48495 * 109.47321 * 239.99991 * 19 17 15
23 23 C 1.53779 * 113.61759 * 176.53037 * 11 10 9
24 24 N 1.28472 * 124.88099 * 304.97612 * 3 2 1
25 25 H 1.08997 * 109.47366 * 59.99683 * 1 2 3
26 26 H 1.09002 * 109.47257 * 180.02562 * 1 2 3
27 27 H 1.09005 * 109.47049 * 299.99963 * 1 2 3
28 28 H 1.08997 * 109.46781 * 240.00005 * 2 1 3
29 29 H 1.08998 * 109.46921 * 120.00024 * 2 1 3
30 30 H 1.07999 * 126.38674 * 359.94633 * 4 3 2
31 31 H 1.08002 * 127.24456 * 179.97438 * 5 4 3
32 32 H 0.97003 * 120.00212 * 0.02562 * 9 7 6
33 33 H 1.09005 * 109.46817 * 299.99967 * 10 9 7
34 34 H 1.09002 * 109.47133 * 60.00013 * 10 9 7
35 35 H 1.09001 * 112.85336 * 45.32776 * 11 10 9
36 36 H 1.09002 * 113.62004 * 334.56411 * 12 11 10
37 37 H 1.09005 * 113.61513 * 105.47129 * 12 11 10
38 38 H 1.09004 * 113.74696 * 139.94314 * 13 12 11
39 39 H 0.96995 * 120.00370 * 72.48724 * 14 13 12
40 40 H 0.96997 * 119.99700 * 180.02562 * 18 17 15
41 41 H 1.08994 * 113.61245 * 254.52688 * 23 11 10
42 42 H 1.09001 * 113.61416 * 25.43170 * 23 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.8748 1.8976 0.9073
5 6 3.0832 3.1920 0.5706
6 6 2.2961 3.4139 -0.5842
7 6 2.1753 4.6798 -1.3356
8 8 2.7900 5.6635 -0.9721
9 7 1.3834 4.7442 -2.4244
10 6 1.2631 5.9999 -3.1694
11 6 0.3106 5.8030 -4.3504
12 6 0.9974 5.2492 -5.6100
13 6 0.1185 6.2206 -6.4186
14 7 -1.1729 5.6518 -6.8123
15 6 -1.4008 5.3099 -8.1186
16 1 -0.6287 5.4599 -8.8587
17 6 -2.6242 4.7704 -8.4916
18 7 -3.5651 4.5871 -7.5895
19 14 -2.9354 4.3047 -10.2736
20 1 -1.7273 4.6074 -11.0825
21 1 -3.2376 2.8534 -10.3604
22 1 -4.0882 5.0824 -10.7944
23 6 0.0484 7.0892 -5.1515
24 7 1.6936 2.2753 -0.8636
25 1 -0.3634 0.5139 -0.8899
26 1 -0.3634 -1.0277 0.0005
27 1 -0.3633 0.5139 0.8900
28 1 1.8933 -0.5138 -0.8900
29 1 1.8933 -0.5138 0.8900
30 1 3.3118 1.3753 1.7455
31 1 3.7134 3.9065 1.0794
32 1 0.8926 3.9593 -2.7143
33 1 0.8709 6.7760 -2.5122
34 1 2.2441 6.2984 -3.5392
35 1 -0.5977 5.2662 -4.0767
36 1 2.0621 5.4767 -5.6627
37 1 0.7781 4.1986 -5.8008
38 1 0.6407 6.6988 -7.2474
39 1 -1.8665 5.5173 -6.1477
40 1 -4.4198 4.2098 -7.8501
41 1 -0.9359 7.5219 -4.9726
42 1 0.8531 7.8207 -5.0785
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001091267302.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:19:21
Heat of formation + Delta-G solvation = 70.246513 kcal
Electronic energy + Delta-G solvation = -22503.311271 eV
Core-core repulsion = 19100.068267 eV
Total energy + Delta-G solvation = -3403.243003 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-42.82574 -39.47681 -38.32906 -34.85672 -34.57046 -33.16048 -31.01252 -30.43151
-29.95438 -27.45667 -25.02788 -24.86457 -23.64355 -22.45376 -21.59362 -21.47273
-19.95775 -18.45584 -17.93881 -17.25016 -16.74495 -16.22668 -15.77541 -15.22148
-14.83475 -14.71334 -14.30716 -14.10133 -13.86078 -13.65510 -13.23328 -13.15175
-12.84793 -12.74099 -12.51362 -12.20161 -11.87162 -11.81843 -11.34644 -11.04858
-10.98988 -10.84735 -10.45038 -10.23844 -10.11291 -9.79659 -9.67078 -9.47100
-9.42362 -9.25881 -8.89547 -8.82977 -6.97803 -5.79305 -3.08049 1.49475
1.97436 2.19431 3.29542 3.42311 3.45820 3.48254 3.50386 4.02851
4.45800 4.52497 4.57141 4.59997 4.71230 5.01016 5.13139 5.15023
5.21428 5.30028 5.34729 5.47733 5.48821 5.58616 5.69422 5.72651
5.76055 5.91893 6.01373 6.15933 6.22301 6.26655 6.42079 6.50053
6.54569 6.64696 6.80010 6.95127 7.09162 7.52292 7.71068 7.81610
8.29407 8.40018 9.50658 10.08829 10.43068 11.43259
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.016449 B = 0.003073 C = 0.002673
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1701.872208 B = 9109.120264 C =10471.353416
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.117 3.883
3 N -0.282 5.282
4 C -0.023 4.023
5 C -0.180 4.180
6 C -0.017 4.017
7 C 0.601 3.399
8 O -0.541 6.541
9 N -0.710 5.710
10 C 0.131 3.869
11 C -0.119 4.119
12 C -0.168 4.168
13 C 0.167 3.833
14 N -0.706 5.706
15 C -0.240 4.240
16 H 0.073 0.927
17 C -0.014 4.014
18 N -0.933 5.933
19 Si 0.908 3.092
20 H -0.280 1.280
21 H -0.292 1.292
22 H -0.291 1.291
23 C -0.147 4.147
24 N -0.255 5.255
25 H 0.077 0.923
26 H 0.080 0.920
27 H 0.062 0.938
28 H 0.094 0.906
29 H 0.102 0.898
30 H 0.181 0.819
31 H 0.161 0.839
32 H 0.408 0.592
33 H 0.065 0.935
34 H 0.068 0.932
35 H 0.093 0.907
36 H 0.068 0.932
37 H 0.066 0.934
38 H 0.062 0.938
39 H 0.385 0.615
40 H 0.255 0.745
41 H 0.068 0.932
42 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.830 -8.339 18.700 23.647
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.227 4.227
2 C -0.003 4.003
3 N -0.071 5.071
4 C -0.165 4.165
5 C -0.208 4.208
6 C -0.177 4.177
7 C 0.385 3.615
8 O -0.417 6.417
9 N -0.361 5.361
10 C 0.008 3.992
11 C -0.138 4.138
12 C -0.209 4.209
13 C 0.055 3.945
14 N -0.345 5.345
15 C -0.371 4.371
16 H 0.091 0.909
17 C -0.210 4.210
18 N -0.581 5.581
19 Si 0.739 3.261
20 H -0.205 1.205
21 H -0.219 1.219
22 H -0.218 1.218
23 C -0.187 4.187
24 N -0.092 5.092
25 H 0.096 0.904
26 H 0.098 0.902
27 H 0.081 0.919
28 H 0.112 0.888
29 H 0.121 0.879
30 H 0.198 0.802
31 H 0.179 0.821
32 H 0.243 0.757
33 H 0.083 0.917
34 H 0.086 0.914
35 H 0.111 0.889
36 H 0.086 0.914
37 H 0.085 0.915
38 H 0.080 0.920
39 H 0.219 0.781
40 H 0.065 0.935
41 H 0.087 0.913
42 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 11.459 -8.272 17.968 22.860
hybrid contribution -0.131 -0.575 -0.116 0.601
sum 11.328 -8.847 17.852 22.919
Atomic orbital electron populations
1.22092 0.92883 1.03541 1.04179 1.22028 0.96903 0.76663 1.04735
1.45659 1.32326 1.10456 1.18675 1.22866 0.99384 0.95556 0.98708
1.21775 1.04521 0.96042 0.98511 1.22011 1.02800 0.93172 0.99723
1.16906 0.79295 0.85385 0.79895 1.90773 1.46615 1.35812 1.68465
1.45930 1.47004 1.15217 1.27927 1.21522 0.99837 0.85136 0.92728
1.22707 0.98621 0.99713 0.92778 1.23912 0.98603 1.01641 0.96791
1.21098 0.88236 0.92099 0.93072 1.42188 1.10906 1.73545 1.07846
1.19345 0.98095 1.34115 0.85576 0.90943 1.24764 0.96441 1.01989
0.97780 1.69677 1.05438 1.50670 1.32292 0.86102 0.77708 0.77777
0.84518 1.20492 1.21882 1.21849 1.23437 1.01542 0.95755 0.97957
1.73504 1.21995 0.98044 1.15632 0.90427 0.90157 0.91862 0.88755
0.87938 0.80216 0.82117 0.75656 0.91651 0.91396 0.88884 0.91389
0.91513 0.91955 0.78103 0.93529 0.91313 0.90409
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.01 10.02 37.16 0.37 -0.63 16
2 C 0.12 0.63 7.12 -4.04 -0.03 0.61 16
3 N -0.28 -2.64 3.41 -61.33 -0.21 -2.85 16
4 C -0.02 -0.19 11.40 -17.17 -0.20 -0.39 16
5 C -0.18 -2.02 10.81 -39.36 -0.43 -2.45 16
6 C -0.02 -0.23 7.13 -82.77 -0.59 -0.82 16
7 C 0.60 9.37 7.82 -12.39 -0.10 9.27 16
8 O -0.54 -9.80 16.93 5.31 0.09 -9.71 16
9 N -0.71 -10.29 5.55 -61.29 -0.34 -10.63 16
10 C 0.13 1.90 5.50 -4.04 -0.02 1.88 16
11 C -0.12 -1.88 3.62 -89.81 -0.33 -2.21 16
12 C -0.17 -2.92 7.44 -25.83 -0.19 -3.11 16
13 C 0.17 3.32 4.57 -67.03 -0.31 3.02 16
14 N -0.71 -17.63 5.31 -52.55 -0.28 -17.90 16
15 C -0.24 -6.65 9.97 -15.06 -0.15 -6.80 16
16 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16
17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16
18 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16
19 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16
20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16
21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16
22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16
23 C -0.15 -2.42 7.39 -25.92 -0.19 -2.61 16
24 N -0.26 -3.21 11.36 33.42 0.38 -2.83 16
25 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16
26 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16
27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16
28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16
29 H 0.10 0.23 8.04 -51.93 -0.42 -0.19 16
30 H 0.18 0.74 8.06 -52.49 -0.42 0.31 16
31 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16
32 H 0.41 5.66 8.20 -40.82 -0.33 5.32 16
33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16
34 H 0.07 1.00 7.88 -51.93 -0.41 0.59 16
35 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16
36 H 0.07 1.06 7.92 -51.93 -0.41 0.65 16
37 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16
38 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16
39 H 0.38 10.15 7.90 -40.82 -0.32 9.83 16
40 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16
41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16
42 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16
LS Contribution 358.24 15.07 5.40 5.40
Total: -1.00 -33.81 358.24 -8.01 -41.83
By element:
Atomic # 1 Polarization: 17.93 SS G_CDS: -6.51 Total: 11.42 kcal
Atomic # 6 Polarization: -2.50 SS G_CDS: -2.25 Total: -4.75 kcal
Atomic # 7 Polarization: -61.75 SS G_CDS: 0.28 Total: -61.47 kcal
Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.71 kcal
Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal
Total LS contribution 5.40 Total: 5.40 kcal
Total: -33.81 -8.01 -41.83 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001091267302.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 112.072 kcal
(2) G-P(sol) polarization free energy of solvation -33.811 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.261 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal
(6) G-S(sol) free energy of system = (1) + (5) 70.247 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds